Thiothrix unzii strain A1 plasmid pTunz3, complete sequence.
type: Entry
definition: Thiothrix unzii strain A1 plasmid pTunz3, complete sequence.
sequence version: NZ_CP072792.1
sequence date: 2023-05-07
sequence: sequence
division: CON
label: NZ_CP072792.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN18614033
keyword: RefSeq
source: Thiothrix unzii
organism: Thiothrix unzii
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP072792.1.\nBacteria and source DNA available from Dr. Margarita Grabovich\n(margarita_grabov@mail.ru).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 23-MAR-2021\nAssembly Method :: Flye v. 2.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 448.0x\nSequencing Technology :: Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/07/2023 04:54:28\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,728\nCDSs (total) :: 3,673\nGenes (coding) :: 3,656\nCDSs (with protein) :: 3,656\nGenes (RNA) :: 55\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 45\nncRNAs :: 4\nPseudo Genes (total) :: 17\nCDSs (without protein) :: 17\nPseudo Genes (ambiguous residues) :: 0 of 17\nPseudo Genes (frameshifted) :: 7 of 17\nPseudo Genes (incomplete) :: 9 of 17\nPseudo Genes (internal stop) :: 1 of 17\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 21012
topology: circular
so has quality: SO_0000988
location: 1..21012
location: region:1-21012:1
RO_0002162: 111769

NZ_CP072792
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN18614033
type: BioSample
SIO_000068: biosample

1
title: Genomics, taxonomy and metabolism of representatives of sulfur bacteria of the genus Thiothrix: Thiothrix fructosivorans QT, Thiothrix unzii A1T and three new species, Thiothrix subterranea sp. nov., Thiothrix litoralis sp. nov. and 'Candidatus Thiothrix anitrata' sp. nov
author: Ravin, N.V.
author: Smolyakov, D.
author: Rudenko, T.S.
author: Mardanov, A.V.
author: Beletsky, A.V.
author: Markov, N.D.
author: Fomenkov, A.I.
author: Roberts, R.J.
author: Karnachuk, O.V.
author: Novikov, A.
author: Grabovich, M.Y.
journal: Unpublished

2
title: Direct Submission
author: Ravin, N.V.
author: Beletsky, A.V.
author: Mardanov, A.V.
journal: Submitted (05-APR-2021) Department of molecular biology of microorganisms, Institute of Bioengineering, Research Center of Biotechnology of RAS, Prosp. 60-let Oktyabrya, bld 7-1, Moscow 117312, Russia

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21012:1
position: 21012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21012:1:source
so part of: sequence
organism: Thiothrix unzii
mol type: genomic DNA
strain: A1
isolation source: Isolated from activated-sludge plants
type material: type strain of Thiothrix unzii
plasmid: pTunz3

111769
type: Taxonomy
SIO_000068: taxonomy

J9260_RS00005
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS00005
old locus tag: J9260_00005
so part of: sequence
location: complement(join(19298..21012,1..3271))
location: region:1-21012:-1
so has part: feature:1-3271:-1:exon
so has part: feature:19298-21012:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21012:-1
position: 21012
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-3271:-1:exon

position:3271:-1
position: 3271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:19298-21012:-1:exon

position:19298:-1
position: 19298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

J9260_RS00005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS00005
old locus tag: J9260_00005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020308060.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type ISP restriction/modification enzyme
translation: MTPLQILLATYHEASQTHREKGTYFEDLICTYLRNEASYRDLYSKVWTYADWAREQGLDARDTGIDLVAQTHGTNEFHAIQCKFYAPDHRIQKKEIDSFFTASGKKPFTHRLIIVTTNHWSEHADDALRDQQPPVSKIDLNDLENSQIDWSRYQPNQPAVFKAKKQLRDHQKKALAKVEQGLQTAARGKLIMACGTGKTFTSLKIAESLAGSGKRVLFLVPSLSLLSQTLTEWTQESAIPLHSFAVCSDSDVGNKRKKDDDIVQTFAHELRYPATTKPDRLAQELGKRHDSHHMSVVFSTYHSIEVISKAQQAHGLAAFDLIICDEAHRTTGATFLDEGEDESSFVKVHDAAFIRASKRLYMTATPRIYADSTKVTAERDNVALCSMDNAALYGQDLYVISFSEAVKQGLLVDYKVLVLSIDEAHISRSLQNLLKDDDNQLKVDDAAKIVGCWKALSKQGTTQDLVDDQAFMRRAVAFCQVIEPAKNPKYHKVSSKNIAAMFQEVVEAYQEHEREQQTEFETPVTLTLSCEAAHVDGGMNASQKEEKLNWLKAETEDNTCRILSNVRCLSEGVDVPALDAVLFLTPRNSQVDVVQSVGRVMRLAPGKKRGYIILPVVIPAGMEPHKALEDNKTYKVVWQVLQALRSHDDRFDAMVNKLDLNGPDTSKMEVIAITDKIAKKAKKPTKKDTGKGKFELGKKPQKLGKGGKGDAESKQVEMTLEVDEIQRAIYAKIVKKVGNRSHWEDWANDIAKIARTHITRIQTILDTPTNTAEIAAFQRFAEELRDDLNNAITDGEIVEMLAQHLITKPVFEALFKDYSFAEHNPMSKAMQDVLEKLEAHRLDKEANTLQGFYDSVKLRAEGIDNAAGKQKIVVELYDKFFRNAFPRMTERLGIVYTPVEVVDFIIHSVNDVLQSEFGQTLGDENVHIIDPFTGTGTFITRLLQSGLITPEQLPYKYQHEIHANEIVLLAYYIAAINIEAVYHDLVGGDYLPFNGICLTDTFQLHEKADLVDELLDVNSARRTRQKGLDIRVIIGNPPYSIGQGSQNDNNQNVGYPHLDSRIEATYAAHSKATLAKGLYDSYIRAIRWASDRIGDSGVMGFVTNAGFIEANTADGLRKCLAEEFSSIYVFHLRGNARTSGEMRRKEKDNVFGQGTRTPIAITLFVKNPTASSHGNIFLHDIGDYLTQAEKLEKISAFASINGIAAADGWQRITPDAHNDWIGQRDNSFSSFISMGDKKDKDAITVFENYSNGVVTSRDAWSYQFSRKNLDFSTREMIDYYNQEVKRYEKACIGLSKEQYPDVNNFINNDATKISWSRAIKKDLSRHVKHVFQGNSIRVSIYRPFTKTWMYFNRQFNEMVLQMPRIFPESTIDNRVICVTGLGTQKVFSTIMSAAVADFQLLANSQCFPLKLYEPSTAAEDSAPQPDLFTPATTTAPTPATPRYTSRDGITDAGLAHFHATYPTETISKEDVFYYIYGLLHSEDYKAKYADNLTKELPRIPCVGQAADFWAFSTAGRELAELHVNYETQAKYPVTLDCGGKKLAELHDKDFYVTKMKFASKADKSTVIYNHAITMKGIPLEAYEYVVNGKPALEWVMERQGVSTHKDSGIVNDANDWAVETMKNARYPLELFQRVITVSLRTMAIVRGLPGLDVYGKGNMAQ
SIO_010081: J9260_RS00005
subclass of: SO_0000673
so part of: J9260_RS00005
location: complement(join(19298..21012,1..3271))
location: region:1-21012:-1
so has part: feature:1-3271:-1:exon
so has part: feature:19298-21012:-1:exon

WP_210217465.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-3271:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:19298-21012:-1:exon

J9260_RS00010
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS00010
old locus tag: J9260_00010
so part of: sequence
location: complement(3450..3803)
location: region:3450-3803:-1
so has part: feature:3450-3803:-1:exon
subclass of: SO_0000010

position:3450:-1
position: 3450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3803:-1
position: 3803
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3450-3803:-1:exon

J9260_RS00010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS00010
old locus tag: J9260_00010
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPLRYTSVLTHWVWTTHPAPASGLAYGCTRVAASSGAPGQSPPPRTATAGAIAATGATASNTLAVQGVGLLVASGRLPPPPAAPAGAGLPEGYALDACTPTAALLRSAPPPLPALRR
SIO_010081: J9260_RS00010
subclass of: SO_0000673
so part of: J9260_RS00010
location: complement(3450..3803)
location: region:3450-3803:-1
so has part: feature:3450-3803:-1:exon

WP_210217466.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3450-3803:-1:exon

J9260_RS00015
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS00015
old locus tag: J9260_00015
so part of: sequence
location: 4121..4906
location: region:4121-4906:1
so has part: feature:4121-4906:1:exon
subclass of: SO_0000010

position:4121:1
position: 4121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4906:1
position: 4906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4121-4906:1:exon

J9260_RS00015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS00015
old locus tag: J9260_00015
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQNTIKKHNPHDYLTGTSPTERGDENRRKVVDWVYRWGYSTAPTLQALLGKKATGYAAAMAKSGWLVQTKTQTGGHDGTPKYLYTLSESGLQLAERTTQIPNLHRYPELDPFRVNQKLTRHYLLAQTSTINALATGKATDYETERMIDTDGDQLGVKRPDVVWIRDKFRVGVEVELSAKWDRKLDQFIGGIKDALEQKRYTHFMVVTDSNRIAERYREALAQPIQLWEKDKTSNKWKPGQTVAAPDWLPKRVLVELLEGKR
SIO_010081: J9260_RS00015
subclass of: SO_0000673
so part of: J9260_RS00015
location: 4121..4906
location: region:4121-4906:1
so has part: feature:4121-4906:1:exon

WP_210217467.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4121-4906:1:exon

J9260_RS00020
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS00020
old locus tag: J9260_00020
so part of: sequence
location: 4903..5733
location: region:4903-5733:1
so has part: feature:4903-5733:1:exon
subclass of: SO_0000010

position:4903:1
position: 4903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5733:1
position: 5733
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4903-5733:1:exon

J9260_RS00020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS00020
old locus tag: J9260_00020
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRYPSILLWCALVLVGCGESTAEKQARQAEEQETRRQVALAMPTDRMSLYLINQAENRCKTHPVHECNDIATLRQNIADAVASCSGNTSHLCQLMAYPVQHQPEDFAQLPQGIGNPLPSSPFYWGLGNPVLDRYATQTGYRAEVSKQWLQANKQPLWLALAALLTLLLAYAGKLLHTAHQAHKREALKHQQQAVEQADQEALARKQAEEQAAVQQAEQAEAQRLANERQRREQAQWEADQIAAAQAKAEQARLEAEEQAEMDELAAMFRDAFKGVK
SIO_010081: J9260_RS00020
subclass of: SO_0000673
so part of: J9260_RS00020
location: 4903..5733
location: region:4903-5733:1
so has part: feature:4903-5733:1:exon

WP_210217468.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4903-5733:1:exon

J9260_RS00025
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS00025
old locus tag: J9260_00025
so part of: sequence
location: complement(5717..6076)
location: region:5717-6076:-1
so has part: feature:5717-6076:-1:exon
subclass of: SO_0000010

position:5717:-1
position: 5717
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6076:-1
position: 6076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5717-6076:-1:exon

J9260_RS00025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS00025
old locus tag: J9260_00025
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKLGFAMLFMLAGCSADYSVELGNGYSYEHWGNNFIARTVAGEQRQVITGQVDSYLKKDAFVLAVQTAPDALGKRYYVLDTGTGELKRFTVQADFLQDTRKLGVADEELLKEHVISPL
SIO_010081: J9260_RS00025
subclass of: SO_0000673
so part of: J9260_RS00025
location: complement(5717..6076)
location: region:5717-6076:-1
so has part: feature:5717-6076:-1:exon

WP_210217469.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5717-6076:-1:exon

J9260_RS00030
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS00030
old locus tag: J9260_00030
so part of: sequence
location: 7057..8007
location: region:7057-8007:1
so has part: feature:7057-8007:1:exon
subclass of: SO_0000010

position:7057:1
position: 7057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8007:1
position: 8007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7057-8007:1:exon

J9260_RS00030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS00030
old locus tag: J9260_00030
inference: COORDINATES: protein motif:HMM:NF013235.2
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RepB family plasmid replication initiator protein
translation: MKDLVIKPNHVIKSNHVIEASYRLTLQEQRVVLMCITQIKKGQKIDAYTPFVVTASDFSDMFSIPLTGAYSELQTVADRLYERSVTVYQPDPEEPTLEATRTRWISAIDYIPKTGKIRLYFAAKMIPYISMLEGGFTRYNMEYIAKMNSVYGVRFYELMKSWLFGEARKTKTVGIDEIKELLALKDSKGNYQYPSIKDFKLNVLNKAISDINEHSDLNASYEDKKTGRKITHFTFTFGLKVKEQGKVKEPEQSKFEAENKPKIQRTRKVEQHDKSDVQAVIEDLLGMQNLAKMAGKPLAEMATPQQMEKYRKYNLI
SIO_010081: J9260_RS00030
subclass of: SO_0000673
so part of: J9260_RS00030
location: 7057..8007
location: region:7057-8007:1
so has part: feature:7057-8007:1:exon

WP_210217470.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7057-8007:1:exon

J9260_RS00035
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS00035
old locus tag: J9260_00035
so part of: sequence
location: 8086..8430
location: region:8086-8430:1
so has part: feature:8086-8430:1:exon
subclass of: SO_0000010

position:8086:1
position: 8086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8430:1
position: 8430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8086-8430:1:exon

J9260_RS00035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS00035
old locus tag: J9260_00035
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MHTHDSNLRPSVREHFTDNHATPPRNTAVSTPNHPAPVDWALFFHVVVRLLAVTALLYIAYCIFTYFQLFGVSAIALSGQFALALFFTYAVLTGYDDAETLLICLGMFLLVGMF
SIO_010081: J9260_RS00035
subclass of: SO_0000673
so part of: J9260_RS00035
location: 8086..8430
location: region:8086-8430:1
so has part: feature:8086-8430:1:exon

WP_210217471.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8086-8430:1:exon

J9260_RS00040
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS00040
old locus tag: J9260_00040
so part of: sequence
location: 8444..9949
location: region:8444-9949:1
so has part: feature:8444-9949:1:exon
subclass of: SO_0000010

position:8444:1
position: 8444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9949:1
position: 9949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8444-9949:1:exon

J9260_RS00040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS00040
old locus tag: J9260_00040
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKSMFTNDTAAIFDAKARAVRAYHLMQWARWATFCLYIVAVFMLYVSDVWGIASFLENNSNEYIALAVFSVTSFILAYFLASSKEAVYEDIALNRSEGFHMTAGQRFAMVLFASAGILFELFSATSNQQHISNNAAEQVGLLKPAEVGSVAINTSPALTDALMKAQANLNKCQEMLKQGRVKDCHVSEGKVTGALKAIDMANQTAATVSGELVDKTNAHNEKLLERFDKPMFKVVGKAVGGDTNDGMIVAVAVMITIFELQHILAVFAYGNALRRMNADKLAKPPVATTKPEPTLQTGSASLLHKTGETIATEMAKAQQAREQVYHSAADKLDNLQVRESGGFKQSPEQLAKAMELAGMTYRTELRQGGQQFRDAPLDRPTPATLPTVTDTVPARSETVADTVPARSQNGSTERLTDAAQQTETDLYPDWVGQVSNQTISPGARDAKRFISQRTKSGADKTGLTVQEMGRIWLNWQARAVGEGVLTPNLDYSNGKPKYILA
SIO_010081: J9260_RS00040
subclass of: SO_0000673
so part of: J9260_RS00040
location: 8444..9949
location: region:8444-9949:1
so has part: feature:8444-9949:1:exon

WP_210217472.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8444-9949:1:exon

J9260_RS00045
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS00045
old locus tag: J9260_00045
so part of: sequence
location: complement(9986..10429)
location: region:9986-10429:-1
so has part: feature:9986-10429:-1:exon
subclass of: SO_0000010

position:9986:-1
position: 9986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10429:-1
position: 10429
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9986-10429:-1:exon

J9260_RS00045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS00045
old locus tag: J9260_00045
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002707656.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF29 domain-containing protein
translation: MGAVAYDQDLYSWSLEQAKLLRERKFDQIDLEHIIEEIEDMSKSEKRALGSFLETLLMHLLKWQYQPAHQGRSWKFTIIEQRKRIVGHMKENPGLKSKLPDVIETAYGYAVSGAVRETGLAQETFPVQCPWTYEQFMDEDFWPEPTQ
SIO_010081: J9260_RS00045
subclass of: SO_0000673
so part of: J9260_RS00045
location: complement(9986..10429)
location: region:9986-10429:-1
so has part: feature:9986-10429:-1:exon

WP_210217473.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9986-10429:-1:exon

J9260_RS00050
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS00050
old locus tag: J9260_00050
so part of: sequence
location: 10971..11840
location: region:10971-11840:1
so has part: feature:10971-11840:1:exon
subclass of: SO_0000010

position:10971:1
position: 10971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11840:1
position: 11840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10971-11840:1:exon

J9260_RS00050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS00050
old locus tag: J9260_00050
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007195510.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MKVSPLRQRMLDAMQMRGYSPRTHDSYVQAVLDLSHYYHRSPDKISADEVQQWLLWLLKERHVSSSTCHLYFNGIRFLFVTVLEDADFMAYRFALPKRQQRLPDLLSRAEVSQLVAAPDNPTHRLLLLSCYACGLRVSELVNIRVQDIDGSRRILHVVQGKGQKDRYVPVPDTLLAQWRAYWQRCHPKQWLFPGKYYGYQQSMTTPQKIYLRAKRQVGIRKAGGIHSLRHAFATHSLQAGMPIHQLQQVLGHEHVSSTMRYAHWLPETQQGGQAIDLLAGLDAAAVCYA
SIO_010081: J9260_RS00050
subclass of: SO_0000673
so part of: J9260_RS00050
location: 10971..11840
location: region:10971-11840:1
so has part: feature:10971-11840:1:exon

WP_210217459.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10971-11840:1:exon

J9260_RS00055
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS00055
old locus tag: J9260_00055
so part of: sequence
location: 11828..12946
location: region:11828-12946:1
so has part: feature:11828-12946:1:exon
subclass of: SO_0000010

position:11828:1
position: 11828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12946:1
position: 12946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11828-12946:1:exon

J9260_RS00055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS00055
old locus tag: J9260_00055
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007195511.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS91 family transposase
translation: MLRLAEVVQRFQSHLPPLPPPVNKVCQQLLACRTAALGGFQLRCGECGEEVPLYHACRNRHCPRCQQQASEQWQQRELANVVPAPYFHLVFTLPHELNGWVRLHPAVVYHALFRSVWDTLNTLGHDPKRLNGQLGMTAVLHTWGQNLSQHVHLHCLIPGGALDAAQQWHPAKSTYLFPIRVLSRLFRGKLVSRLREAAEDGQLPRVTHPGEVKQLLGQLMRKDWVVYAKPCLHKAETVVKYLARYTRKIAISESRLLGITDETVSFRYHDYRDGQQKVMTLAGDEFLRRFLQHVLPAGFLRIRHYGWLANACRKTRLPQVREAIARYAPTLPMVADKPMEAIARFDGIPCPCCKTGMMRVRYPLPPQRLEYG
SIO_010081: J9260_RS00055
subclass of: SO_0000673
so part of: J9260_RS00055
location: 11828..12946
location: region:11828-12946:1
so has part: feature:11828-12946:1:exon

WP_210217460.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11828-12946:1:exon

J9260_RS00060
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS00060
old locus tag: J9260_00060
so part of: sequence
location: 13349..15178
location: region:13349-15178:1
so has part: feature:13349-15178:1:exon
subclass of: SO_0000010

position:13349:1
position: 13349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15178:1
position: 15178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13349-15178:1:exon

J9260_RS00060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS00060
old locus tag: J9260_00060
inference: COORDINATES: protein motif:HMM:NF015210.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF262 domain-containing protein
translation: MTSDVSVNQSFIDVLKMGEIIIPAYQRAYSWGEKQLEEFIADLKSHQQRTGHGNYYLGHFIFERNNNNALEIIDGQQRITTALLFLSACKRLNQVIVHEVFKYISNFTVTDYDSIAFKELINCGYINNINTASQKRMQIAISGGSDSFKGFDSYIKNNSDKVDDLINIICNSYVSFALYEDKSVAAQIFELHNTRGVNLTETEKVKSYLMKQIFLLSSKPQEDILILQEHFSKIYELEEKANQNWIKGEMTLDNILMYHLRAVDDGNKLSAFNSPNTSSGDNGSLSYVKGKIEKLQSDANKILDYIFKLTREFNNTVEIVTNTIPYLDKKYRLLGDVLMLDKDRSMNFLLRLFRTKNPLDNKILERWERFLFCYEFIYHKGIFYNLDYANRGSFDLILKEINSDSDSKIISDLINDYFVGNKRFAKRKLEENNNSFWSWVVWYYDVDDENDKVYNKKATRNWLLKNAYNSWKLIPYLLYKYEIENCQANIEKIRDNVIKSNRISIDHIVARGSEVAQKITENINGIGNLAIITVSANSSLQNSNVKNHAKAFEKLGLEHTAKQVTKWIDHDDLSLSIETRSHDILDFLCNYFIKPINIWSGSSIYLNYQ
SIO_010081: J9260_RS00060
subclass of: SO_0000673
so part of: J9260_RS00060
location: 13349..15178
location: region:13349-15178:1
so has part: feature:13349-15178:1:exon

WP_210217461.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13349-15178:1:exon

J9260_RS00065
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS00065
old locus tag: J9260_00065
so part of: sequence
location: complement(15626..16177)
location: region:15626-16177:-1
so has part: feature:15626-16177:-1:exon
subclass of: SO_0000010

position:15626:-1
position: 15626
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16177:-1
position: 16177
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15626-16177:-1:exon

J9260_RS00065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS00065
old locus tag: J9260_00065
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001696621.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: stationary phase growth adaptation protein
translation: MILDEVMQWKAFEAEDGTIFDLSFLDAKKVTYTHSFAGKPDVSYDFWVTYSCHCFTKDYPHQSEAEQQALAYVSPKETRPFCQQRYILARQHLCQIVENLASAEYTITDAGYGSYITAKVLTDDGETVWYHVPFRVYRERKKYRLHVLSAYPAPERRGGGKIGFFKIAYNLRMGKPLPSNPHK
SIO_010081: J9260_RS00065
subclass of: SO_0000673
so part of: J9260_RS00065
location: complement(15626..16177)
location: region:15626-16177:-1
so has part: feature:15626-16177:-1:exon

WP_246499364.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15626-16177:-1:exon

J9260_RS00070
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS00070
old locus tag: J9260_00070
so part of: sequence
location: 16323..16946
location: region:16323-16946:1
so has part: feature:16323-16946:1:exon
subclass of: SO_0000010

position:16323:1
position: 16323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16946:1
position: 16946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16323-16946:1:exon

J9260_RS00070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS00070
old locus tag: J9260_00070
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010403240.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MRTIVIASQKGGVGKTTLAGHLGVAACQQGQQSVVLIDMDTQGSLTSWWNARNADTPQFASVPTVASLATLLEQLEQAGIDWVIIDTPPAVTELIRQVMGVADLVVIPTRPSPHDLRAVGATVDLALQANKRMVFVLNGAASRARITVEAAIALSQYGAVAPTVIHQRTEFASAMTDGRTVLEVNQDGKSSEEINALWEYVSNYSRK
SIO_010081: J9260_RS00070
subclass of: SO_0000673
so part of: J9260_RS00070
location: 16323..16946
location: region:16323-16946:1
so has part: feature:16323-16946:1:exon

WP_210217462.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16323-16946:1:exon

J9260_RS00075
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS00075
so part of: sequence
location: 17050..17310
location: region:17050-17310:1
so has part: feature:17050-17310:1:exon
subclass of: SO_0000010

position:17050:1
position: 17050
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17310:1
position: 17310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17050-17310:1:exon

J9260_RS00075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS00075
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKATPLTAGLVSTKGMASPSAIAQPQTENVVRATTHDYFKSLTFKLDKARYMQLKQNGLESGRSSQEILTAALDLYLRSLQNSGS
SIO_010081: J9260_RS00075
subclass of: SO_0000673
so part of: J9260_RS00075
location: 17050..17310
location: region:17050-17310:1
so has part: feature:17050-17310:1:exon

WP_210217463.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17050-17310:1:exon

J9260_RS00080
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS00080
old locus tag: J9260_00075
so part of: sequence
location: complement(17583..18194)
location: region:17583-18194:-1
so has part: feature:17583-18194:-1:exon
subclass of: SO_0000010

position:17583:-1
position: 17583
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18194:-1
position: 18194
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17583-18194:-1:exon

J9260_RS00080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS00080
old locus tag: J9260_00075
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017167677.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MKVVRIYLRVSTDEQDLTRQVAIVDNARAAGCYVAGIYREKASGARADRPELLRMISDLQVGEIVVAEKIDRLSRLPLAEAEQLVASIRDKGAKLSVPGIVDLSDLAAEAQGVAKIVLESIQNMLLKLALQMARDDYEDRRERQRQGVELAKCAGKYLGRQADTAMHTRIIALRSSGHSITKTAKLAGCSESQVKRVWSMRGN
SIO_010081: J9260_RS00080
subclass of: SO_0000673
so part of: J9260_RS00080
location: complement(17583..18194)
location: region:17583-18194:-1
so has part: feature:17583-18194:-1:exon

WP_210217475.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17583-18194:-1:exon

J9260_RS18750
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18750
so part of: sequence
location: 18405..18527
location: region:18405-18527:1
so has part: feature:18405-18527:1:exon
subclass of: SO_0000010

position:18405:1
position: 18405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18527:1
position: 18527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18405-18527:1:exon

J9260_RS18750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18750
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSKVSQVIKTAADIHEQGIALKVLTQNIDTSTSEGRLFFT
SIO_010081: J9260_RS18750
subclass of: SO_0000673
so part of: J9260_RS18750
location: 18405..18527
location: region:18405-18527:1
so has part: feature:18405-18527:1:exon

WP_281419383.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18405-18527:1:exon

J9260_RS18755
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS18755
so part of: sequence
location: 18524..18667
location: region:18524-18667:1
so has part: feature:18524-18667:1:exon
subclass of: SO_0000010

position:18524:1
position: 18524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18667:1
position: 18667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18524-18667:1:exon

J9260_RS18755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS18755
inference: COORDINATES: protein motif:HMM:NF012464.2
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MTAAFDEFQRELIVENTRAGLAAANKRGRRGGRPKAMNEQTVKQAEV
SIO_010081: J9260_RS18755
subclass of: SO_0000673
so part of: J9260_RS18755
location: 18524..18667
location: region:18524-18667:1
so has part: feature:18524-18667:1:exon

WP_281419384.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18524-18667:1:exon

J9260_RS00090
type: Gene
subclass of: SO_0000704
RO_0002162: 111769
locus tag: J9260_RS00090
old locus tag: J9260_00085
so part of: sequence
location: 18944..19252
location: region:18944-19252:1
so has part: feature:18944-19252:1:exon
subclass of: SO_0000010

position:18944:1
position: 18944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19252:1
position: 19252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18944-19252:1:exon

J9260_RS00090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 111769
locus tag: J9260_RS00090
old locus tag: J9260_00085
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020396289.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HU family DNA-binding protein
translation: MTKSDIIQNIIFRSSKSCSTDIDKSVNLLLELMGSALASGGRIEVRGFGSFAVHTRKPRTARNPKTGESVSLSSKRIPRFKPGNELRVRVDQARVNTPIQDD
SIO_010081: J9260_RS00090
subclass of: SO_0000673
so part of: J9260_RS00090
location: 18944..19252
location: region:18944-19252:1
so has part: feature:18944-19252:1:exon

WP_210217464.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18944-19252:1:exon