Pseudoalteromonas arctica A 37-1-2 plasmid unnamed, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.
Genome sequences of type strains of seven species of the marine bacterium Pseudoalteromonas
Submitted (11-MAR-2015) State Key Laboratory of Microbial Technology, Shandong University, 27 Shanda Nanlu, Jinan, Shandong 250100, P. R. China
Submitted (19-NOV-2011) Shandong University, No. 27 Shandanan Road, Jinan 250100, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP011027.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SOAPdenovo v. 1.05\nGenome Coverage :: 216x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/13/2023 00:45:14\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,269\nCDSs (total) :: 4,134\nGenes (coding) :: 4,069\nCDSs (with protein) :: 4,069\nGenes (RNA) :: 135\nrRNAs :: 10, 9, 9 (5S, 16S, 23S)\ncomplete rRNAs :: 10, 9, 9 (5S, 16S, 23S)\ntRNAs :: 103\nncRNAs :: 4\nPseudo Genes (total) :: 65\nCDSs (without protein) :: 65\nPseudo Genes (ambiguous residues) :: 0 of 65\nPseudo Genes (frameshifted) :: 17 of 65\nPseudo Genes (incomplete) :: 43 of 65\nPseudo Genes (internal stop) :: 15 of 65\nPseudo Genes (multiple problems) :: 8 of 65\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Pseudoalteromonas arctica
COORDINATES: similar to AA sequence:RefSeq:WP_004748001.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005532985.1
COORDINATES: similar to AA sequence:RefSeq:WP_010555486.1
COORDINATES: protein motif:HMM:NF018933.2
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013921.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF017528.2
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: protein motif:HMM:NF015038.2
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025189.2
COORDINATES: protein motif:HMM:NF024096.2
PD-(D/E)XK nuclease-like domain-containing protein
COORDINATES: protein motif:HMM:NF041494.1
COORDINATES: protein motif:HMM:NF015688.2
COORDINATES: similar to AA sequence:RefSeq:WP_004907126.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:YP_005221075.1
DNA replication terminus site-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_016707608.1
COORDINATES: similar to AA sequence:RefSeq:WP_013783547.1
COORDINATES: similar to AA sequence:RefSeq:WP_013783548.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_076612036.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014814.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010555472.1
COORDINATES: similar to AA sequence:RefSeq:WP_004970281.1
COORDINATES: similar to AA sequence:RefSeq:WP_000621263.1
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:YP_005221071.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013141613.1
COORDINATES: similar to AA sequence:RefSeq:WP_010553625.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
topoisomerase DNA-binding C4 zinc finger domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010381732.1
COORDINATES: similar to AA sequence:RefSeq:WP_016800374.1
COORDINATES: similar to AA sequence:RefSeq:WP_004629333.1
COORDINATES: similar to AA sequence:RefSeq:WP_017362516.1
COORDINATES: similar to AA sequence:RefSeq:WP_017783044.1
COORDINATES: similar to AA sequence:RefSeq:WP_008134300.1
COORDINATES: similar to AA sequence:RefSeq:WP_007375502.1
COORDINATES: similar to AA sequence:RefSeq:WP_007420166.1
COORDINATES: protein motif:HMM:NF022019.2
COORDINATES: similar to AA sequence:RefSeq:WP_010554775.1
COORDINATES: similar to AA sequence:RefSeq:WP_010554774.1
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010554773.1
COORDINATES: similar to AA sequence:RefSeq:WP_010554772.1
COORDINATES: similar to AA sequence:RefSeq:WP_010554771.1
COORDINATES: similar to AA sequence:RefSeq:WP_010378845.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015065929.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0045893 - positive regulation of DNA-templated transcription [Evidence IEA]
Cd(II)/Pb(II)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015065928.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004588584.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004588582.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017087771.1
COORDINATES: similar to AA sequence:RefSeq:WP_008110853.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008110852.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008110850.1
COORDINATES: similar to AA sequence:RefSeq:WP_008110847.1
GO:0045340 - mercury ion binding [Evidence IEA]
mercury resistance system periplasmic binding protein MerP
COORDINATES: similar to AA sequence:RefSeq:WP_008110845.1
mercuric transporter MerT family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008110844.1
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific [Evidence IEA]
Hg(II)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008110837.1
COORDINATES: similar to AA sequence:RefSeq:WP_006071221.1
COORDINATES: similar to AA sequence:RefSeq:WP_010554760.1
COORDINATES: similar to AA sequence:RefSeq:WP_016899518.1
COORDINATES: similar to AA sequence:RefSeq:WP_008467342.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_016899516.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: similar to AA sequence:RefSeq:WP_016899515.1
GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
phosphoethanolamine--lipid A transferase
COORDINATES: similar to AA sequence:RefSeq:WP_002962881.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_002962876.1
COORDINATES: similar to AA sequence:RefSeq:WP_008467350.1
COORDINATES: similar to AA sequence:RefSeq:WP_002963282.1
COORDINATES: similar to AA sequence:RefSeq:WP_008467385.1
COORDINATES: similar to AA sequence:RefSeq:WP_010555436.1
type I restriction endonuclease subunit R
COORDINATES: similar to AA sequence:RefSeq:WP_010555435.1
putative DNA binding domain-containing protein
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000229805.1
GO:0015666 - restriction endodeoxyribonuclease activity [Evidence IEA]; GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]; GO:0009307 - DNA restriction-modification system [Evidence IEA]
type I restriction-modification system subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_010555430.1
COORDINATES: similar to AA sequence:RefSeq:WP_019896116.1
COORDINATES: similar to AA sequence:RefSeq:WP_016786473.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF040570.1
COORDINATES: similar to AA sequence:RefSeq:WP_005536335.1