Romboutsia ilealis strain CRIB plasmid 1, complete sequence.
Bacteria; Bacillota; Clostridia; Eubacteriales; Peptostreptococcaceae; Romboutsia.
Submitted (29-APR-2014) WUR, Systems and Synthetic Biology, Dreijenplein 10, 6703HB, Wageningen, Netherlands
REFSEQ INFORMATION: The reference sequence is identical to\nLN555524.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/18/2023 02:01:51\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,515\nCDSs (total) :: 2,360\nGenes (coding) :: 2,337\nCDSs (with protein) :: 2,337\nGenes (RNA) :: 155\nrRNAs :: 14, 14, 14 (5S, 16S, 23S)\ncomplete rRNAs :: 14, 14, 14 (5S, 16S, 23S)\ntRNAs :: 109\nncRNAs :: 4\nPseudo Genes (total) :: 23\nCDSs (without protein) :: 23\nPseudo Genes (ambiguous residues) :: 0 of 23\nPseudo Genes (frameshifted) :: 7 of 23\nPseudo Genes (incomplete) :: 17 of 23\nPseudo Genes (internal stop) :: 5 of 23\nPseudo Genes (multiple problems) :: 6 of 23\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024422.2
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003469463.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]