Tistrella mobilis KA081020-065 plasmid pTM4, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Geminicoccaceae; Tistrella.
Bacterial biosynthesis and maturation of the didemnin anti-cancer agents
Submitted (03-NOV-2011) Division of Life Science, the Hong Kong University of Science and Technology, Room 6321, Division of Life Science, the Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP003240.1.\nSource DNA is available from Dr.Ying Xu, boxuying@ust.hk.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 20:00:23\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,915\nCDSs (total) :: 5,845\nGenes (coding) :: 5,761\nCDSs (with protein) :: 5,761\nGenes (RNA) :: 70\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 55\nncRNAs :: 3\nPseudo Genes (total) :: 84\nCDSs (without protein) :: 84\nPseudo Genes (ambiguous residues) :: 0 of 84\nPseudo Genes (frameshifted) :: 40 of 84\nPseudo Genes (incomplete) :: 43 of 84\nPseudo Genes (internal stop) :: 8 of 84\nPseudo Genes (multiple problems) :: 6 of 84\nCRISPR Arrays :: 7\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_005811445.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009756288.1
COORDINATES: similar to AA sequence:RefSeq:WP_011582257.1
COORDINATES: similar to AA sequence:RefSeq:WP_019403714.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: similar to AA sequence:RefSeq:WP_019644795.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011390925.1
GO:0030956 - glutamyl-tRNA(Gln) amidotransferase complex [Evidence IEA]
GO:0050567 - glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006424 - glutamyl-tRNA aminoacylation [Evidence IEA]
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC
COORDINATES: similar to AA sequence:RefSeq:WP_019013137.1
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA
COORDINATES: similar to AA sequence:RefSeq:WP_014188022.1
GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB
COORDINATES: similar to AA sequence:RefSeq:WP_014188971.1
COORDINATES: similar to AA sequence:RefSeq:WP_017517391.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019092586.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: protein motif:HMM:NF036757.2
neuraminidase-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014198183.1
COORDINATES: similar to AA sequence:RefSeq:WP_009540629.1
methionine ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011253070.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011542914.1
COORDINATES: similar to AA sequence:RefSeq:WP_012336229.1
GO:0008616 - queuosine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012797.2
GO:0003723 - RNA binding [Evidence IEA]; GO:0008173 - RNA methyltransferase activity [Evidence IEA]
GO:0006396 - RNA processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006576054.1
COORDINATES: similar to AA sequence:RefSeq:WP_006576056.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006912086.1
COORDINATES: protein motif:HMM:NF012669.2
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007091552.1
COORDINATES: similar to AA sequence:RefSeq:WP_014724147.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012976433.1
COORDINATES: similar to AA sequence:RefSeq:WP_007091549.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976435.1
COORDINATES: similar to AA sequence:RefSeq:WP_019402949.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_020085421.1
COORDINATES: similar to AA sequence:RefSeq:WP_020085420.1
COORDINATES: similar to AA sequence:RefSeq:WP_014869664.1
COORDINATES: similar to AA sequence:RefSeq:WP_020188024.1
COORDINATES: similar to AA sequence:RefSeq:WP_020085417.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020085416.1
GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010930232.1
COORDINATES: similar to AA sequence:RefSeq:WP_014242427.1
COORDINATES: similar to AA sequence:RefSeq:WP_020042058.1
COORDINATES: similar to AA sequence:RefSeq:WP_007600582.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011482386.1
COORDINATES: similar to AA sequence:RefSeq:WP_015667933.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008890388.1
COORDINATES: similar to AA sequence:RefSeq:WP_018428316.1
COORDINATES: similar to AA sequence:RefSeq:WP_010658675.1
COORDINATES: protein motif:HMM:TIGR01194.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:1904680 - peptide transmembrane transporter activity [Evidence IEA]
GO:0015833 - peptide transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF016818.2
COORDINATES: protein motif:HMM:NF007866.0
GO:0022857 - transmembrane transporter activity [Evidence IEA]
Fe(3+)-hydroxamate ABC transporter permease FhuB
COORDINATES: protein motif:HMM:NF013648.2
COORDINATES: protein motif:HMM:TIGR01783.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015917942.1
COORDINATES: similar to AA sequence:RefSeq:WP_007702319.1
COORDINATES: similar to AA sequence:RefSeq:WP_008943733.1
COORDINATES: similar to AA sequence:RefSeq:WP_018390057.1
COORDINATES: similar to AA sequence:RefSeq:WP_019014957.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0045861 - negative regulation of proteolysis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008945125.1
COORDINATES: similar to AA sequence:RefSeq:WP_017271873.1
COORDINATES: similar to AA sequence:RefSeq:WP_011445012.1
COORDINATES: similar to AA sequence:RefSeq:WP_008190419.1
COORDINATES: similar to AA sequence:RefSeq:WP_018640846.1
COORDINATES: similar to AA sequence:RefSeq:WP_018263561.1
GO:0036424 - L-phosphoserine phosphatase activity [Evidence IEA]
GO:0006564 - L-serine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009540573.1
GO:0052381 - tRNA dimethylallyltransferase activity [Evidence IEA]
tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA
COORDINATES: similar to AA sequence:RefSeq:WP_014414543.1
GO:0003984 - acetolactate synthase activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008891745.1
GO:1990610 - acetolactate synthase regulator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011388228.1
COORDINATES: similar to AA sequence:RefSeq:WP_014527164.1
YihY/virulence factor BrkB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011394192.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
Derived by automated computational analysis using gene prediction method: cmsearch.
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
COORDINATES: nucleotide motif:Rfam:14.4:RF00001