Japanese encephalitis virus, genome.
type: Entry
definition: Japanese encephalitis virus, genome.
sequence version: NC_001437.1
sequence date: 2019-05-24
sequence: sequence
division: VRL
label: NC_001437.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA485481
keyword: RefSeq
source: Japanese encephalitis virus
organism: Japanese encephalitis virus
taxonomy: Viruses; Riboviria; Flaviviridae; Flavivirus.
reference: 1
references: 25719412
reference: 2
references: 19906906
reference: 3
references: 3686827
reference: 4
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence was derived from M18370.\nTruncated version of JEV polyprotein and NS1' protein have been\nadded and annotated with the kind help of Dr. David\nKarlin(Department of Zoology, University of Oxford, UK) and Dr.\nAndrew Firth (Department of Pathology, University of Cambridge,\nUK).\nDraft entry and computer-readable sequence for [1] kindly submitted\nby H.Sumiyoshi, 31-AUG-1989.\nCOMPLETENESS: not full length.

sequence
subclass of: SO_0000353
sequence length: 10976
topology: linear
so has quality: SO_0000987
location: 1..10976
location: region:1-10976:1
RO_0002162: 11072

NC_001437
type: RefSeq
SIO_000068: refseq

PRJNA485481
type: BioProject
SIO_000068: bioproject

1
title: New insights into flavivirus evolution, taxonomy and biogeographic history, extended by analysis of canonical and alternative coding sequences
author: Moureau, G.
author: Cook, S.
author: Lemey, P.
author: Nougairede, A.
author: Forrester, N.L.
author: Khasnatinov, M.
author: Charrel, R.N.
author: Firth, A.E.
author: Gould, E.A.
author: de Lamballerie, X.
journal: PLoS ONE 10 (2), E0117849 (2015)
pubmed: 25719412
comments: Publication Status: Online-Only

25719412
type: PubMed
SIO_000068: pubmed

2
title: NS1' of flaviviruses in the Japanese encephalitis virus serogroup is a product of ribosomal frameshifting and plays a role in viral neuroinvasiveness
author: Melian, E.B.
author: Hinzman, E.
author: Nagasaki, T.
author: Firth, A.E.
author: Wills, N.M.
author: Nouwens, A.S.
author: Blitvich, B.J.
author: Leung, J.
author: Funk, A.
author: Atkins, J.F.
author: Hall, R.
author: Khromykh, A.A.
journal: J. Virol.
volume: 84
issue: 3
pages: 1641-1647
year: 2010
pubmed: 19906906

19906906
type: PubMed
SIO_000068: pubmed

3
title: Complete nucleotide sequence of the Japanese encephalitis virus genome RNA
author: Sumiyoshi, H.
author: Mori, C.
author: Fuke, I.
author: Morita, K.
author: Kuhara, S.
author: Kondou, J.
author: Kikuchi, Y.
author: Nagamatu, H.
author: Igarashi, A.
journal: Virology
volume: 161
issue: 2
pages: 497-510
year: 1987
pubmed: 3686827

3686827
type: PubMed
SIO_000068: pubmed

4
title: Direct Submission
journal: Submitted (01-AUG-2000) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10976:1
position: 10976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-10976:1:source
so part of: sequence
organism: Japanese encephalitis virus
mol type: genomic RNA

11072
type: Taxonomy
SIO_000068: taxonomy

JEVgp1
type: Gene
subclass of: SO_0000704
RO_0002162: 11072
gene: POLY
locus tag: JEVgp1
so part of: sequence
location: 96..10394
location: region:96-10394:1
so has part: feature:96-10394:1:exon
subclass of: SO_0000010

1489713
type: Gene
SIO_000068: ncbigene

position:96:1
position: 96
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10394:1
position: 10394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:96-10394:1:exon

JEVgp1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 11072
gene: POLY
locus tag: JEVgp1
note: JEV polyprotein; The (putative) mature peptides that were missing from the authors' annotation have been added by the NCBI staff with the kind help of Dr. Vladimir Yamshchikov (University of Kansas, Lawrence, KS USA)
codon start: 1
product: polyprotein
translation: MTKKPGGPGKNRAINMLKRGLPRVFPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALAPTKALLGRWKAVEKSVAMKHLTSFKRELGTLIDAVNKRGRKQNKRGGNEGSIMWLASLAVVIAYAGAMKLSNFQGKLLMTINNTDIADVIVIPTSKGENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTENWIIRNPGYAFLAATLGWMLGSNNGQRVVFTILLLLVAPAYSFNCLGMGNRDFIEGASGATWVDLVLEGDSCLTIMANDKPTLDVRMINIEASQLAEVRSYCYHASVTDISTVARCPTTGEAHNEKRADSSYVCKQGFTDRGWGNGCGLFGKGSIDTCAKFSCTSKAIGRTIQPENIKYEVGIFVHGTTTSENHGNYSAQVGASQAAKFTITPNAPSITLKLGDYGEVTLDCEPRSGLNTEAFYVMTVGSKSFLVHREWFHDLALPWTSPSSTAWRNRELLMEFEEAHATKQSVVALGSQEGGLHQALAGAIVVEYSSSVKLTSGHLKCRLKMDKLALKGTTYGMCTEKFSFAKNPADTGHGTVVIELSYSGSDGPCKIPIVSVASLNDMTPVGRLVTVNPFVATSSANSKVLVEMEPPFGDSYIVVGRGDKQINHHWHKAGSTLGKAFSTTLKGAQRLAALGDTAWDFGSIGGVFNSIGKAVHQVFGGAFRTLFGGMSWITQGLMGALLLWMGVNARDRSIALAFLATGGVLVFLATNVHADTGCAIDITRKEMRCGSGIFVHNDVEAWVDRYKYLPETPRSLAKIVHKAHKEGVCGVRSVTRLEHQMWEAVRDELNVLLKENAVDLSVVVNKPVGRYRSAPKRLSMTQEKFEMGWKAWGKSILFAPELANSTFVVDGPETKECPDEHRAWNSMQIEDFGFGITSTRVWLKIREESTDECDGAIIGTAVKGHVAVHSDLSYWIESRYNDTWKLERAVFGEVKSCTWPETHTLWGDGVEESELIIPHTIAGPKSKHNRREGYKTQNQGPWDENGIVLDFDYCPGTKVTITEDCGKRGPSVRTTTDSGKLITDWCCRSCSLPPLRFRTENGCWYGMEIRPVRHDETTLVRSQVDAFNGEMVDPFQLGLLVMFLATQEVLRKRWTARLTIPAVLGALLVLMLGGITYTDLARYVVLVAAAFAEANSGGDVLHLALIAVFKIQPAFLVMNMLSTRWTNQENVVLVLGAALFQLASVDLQIGVHGILNAAAIAWMIVRAITFPTTSSVTMPVLALLTPGMRALYLDTYRIILLVIGICSLLQERKKTMAKKKGAVLLGLALTSTGWFSPTTIAAGLMVCNPNKKRGWPATEFLSAVGLMFAIVGGLAELDIESMSIPFMLAGLMAVSYVVSGKATDMWLERAADISWEMDAAITGSSRRLDVKLDDDGDFHLIDDPGVPWKVWVLRMSCIGLAALTPWAIVPAAFGYWLTLKTTKRGGVFWDTPSPKPCSKGDTTTGVYRIMARGILGTYQAGVGVMYENVFHTLWHTTRGAAIMSGEGKLTPYWGSVKEDRIAYGGPWRFDRKWNGTDDVQVIVVEPGKAAVNIQTKPGVFRTPFGEVGAVSLDYPRGTSGSPILDSNGDIIGLYGNGVELGDGSYVSAIVQGDRQEEPVPEAYTPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRGLPVRYQTSAVQREHQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVELGEAAAIFMTATPPGTTDPFPDSNAPIHDLQDEIPDRAWSSGYEWITEYAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRKSYDTEYPKCKNGDWDFVITTDISEMGANFGASRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGATSEDDSNLAHWTEAKIML…
SIO_010081: JEVgp1
subclass of: SO_0000673
so part of: JEVgp1
location: 96..10394
location: region:96-10394:1
so has part: feature:96-10394:1:exon

NP_059434.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:96-10394:1:exon

JEVgp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 11072
gene: POLY
locus tag: JEVgp1
product: anchored core protein anchC
SIO_010081: JEVgp1
subclass of: SO_0000673
so part of: JEVgp1
location: 96..476
location: region:96-476:1
so has part: feature:96-476:1:exon

NP_775663.1
type: Protein
SIO_000068: ncbiprotein

position:476:1
position: 476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:96-476:1:exon

JEVgp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 11072
gene: POLY
locus tag: JEVgp1
product: core protein C
SIO_010081: JEVgp1
subclass of: SO_0000673
so part of: JEVgp1
location: 96..410
location: region:96-410:1
so has part: feature:96-410:1:exon

NP_775662.1
type: Protein
SIO_000068: ncbiprotein

position:410:1
position: 410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:96-410:1:exon

JEVgp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 11072
gene: POLY
locus tag: JEVgp1
product: membrane glycoprotein precursor prM
note: prM/E cleavage site evidence: N-terminal amino acid sequencing, PMID: 3686827
SIO_010081: JEVgp1
subclass of: SO_0000673
so part of: JEVgp1
location: 477..977
location: region:477-977:1
so has part: feature:477-977:1:exon

NP_775664.1
type: Protein
SIO_000068: ncbiprotein

position:477:1
position: 477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:977:1
position: 977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:477-977:1:exon

JEVgp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 11072
gene: POLY
locus tag: JEVgp1
product: protein pr
note: pr/M cleavage site evidence: N-terminal amino acid sequencing, PMID: 3686827
SIO_010081: JEVgp1
subclass of: SO_0000673
so part of: JEVgp1
location: 477..752
location: region:477-752:1
so has part: feature:477-752:1:exon

YP_009333132.1
type: Protein
SIO_000068: ncbiprotein

position:752:1
position: 752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:477-752:1:exon

JEVgp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 11072
gene: POLY
locus tag: JEVgp1
product: membrane glycoprotein M
SIO_010081: JEVgp1
subclass of: SO_0000673
so part of: JEVgp1
location: 753..977
location: region:753-977:1
so has part: feature:753-977:1:exon

NP_775665.1
type: Protein
SIO_000068: ncbiprotein

position:753:1
position: 753
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:753-977:1:exon

JEVgp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 11072
gene: POLY
locus tag: JEVgp1
product: envelope protein E
note: E/NS1 cleavage site predicted by SignalP 4.1
SIO_010081: JEVgp1
subclass of: SO_0000673
so part of: JEVgp1
location: 978..2477
location: region:978-2477:1
so has part: feature:978-2477:1:exon

NP_775666.1
type: Protein
SIO_000068: ncbiprotein

position:978:1
position: 978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2477:1
position: 2477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:978-2477:1:exon

JEVgp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 11072
gene: POLY
locus tag: JEVgp1
product: non-structural protein NS1
SIO_010081: JEVgp1
subclass of: SO_0000673
so part of: JEVgp1
location: 2478..3533
location: region:2478-3533:1
so has part: feature:2478-3533:1:exon

NP_775667.1
type: Protein
SIO_000068: ncbiprotein

position:2478:1
position: 2478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3533:1
position: 3533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2478-3533:1:exon

JEVgp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 11072
gene: POLY
locus tag: JEVgp1
product: non-structural protein NS2a
SIO_010081: JEVgp1
subclass of: SO_0000673
so part of: JEVgp1
location: 3534..4214
location: region:3534-4214:1
so has part: feature:3534-4214:1:exon

NP_775668.1
type: Protein
SIO_000068: ncbiprotein

position:3534:1
position: 3534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4214:1
position: 4214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3534-4214:1:exon

JEVgp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 11072
gene: POLY
locus tag: JEVgp1
product: non-structural protein NS2b
SIO_010081: JEVgp1
subclass of: SO_0000673
so part of: JEVgp1
location: 4215..4607
location: region:4215-4607:1
so has part: feature:4215-4607:1:exon

NP_775669.1
type: Protein
SIO_000068: ncbiprotein

position:4215:1
position: 4215
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4607:1
position: 4607
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4215-4607:1:exon

JEVgp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 11072
gene: POLY
locus tag: JEVgp1
product: non-structural protein NS3
note: NS3 proteinase/ATPase/helicase peptide
SIO_010081: JEVgp1
subclass of: SO_0000673
so part of: JEVgp1
location: 4608..6464
location: region:4608-6464:1
so has part: feature:4608-6464:1:exon

NP_775670.1
type: Protein
SIO_000068: ncbiprotein

position:4608:1
position: 4608
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6464:1
position: 6464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4608-6464:1:exon

JEVgp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 11072
gene: POLY
locus tag: JEVgp1
product: non-structural protein NS4a
SIO_010081: JEVgp1
subclass of: SO_0000673
so part of: JEVgp1
location: 6465..6842
location: region:6465-6842:1
so has part: feature:6465-6842:1:exon

NP_775671.1
type: Protein
SIO_000068: ncbiprotein

position:6465:1
position: 6465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6842:1
position: 6842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6465-6842:1:exon

JEVgp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 11072
gene: POLY
locus tag: JEVgp1
product: 2K protein
SIO_010081: JEVgp1
subclass of: SO_0000673
so part of: JEVgp1
location: 6843..6911
location: region:6843-6911:1
so has part: feature:6843-6911:1:exon

NP_775672.1
type: Protein
SIO_000068: ncbiprotein

position:6843:1
position: 6843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6911:1
position: 6911
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6843-6911:1:exon

JEVgp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 11072
gene: POLY
locus tag: JEVgp1
product: non-structural protein NS4b
SIO_010081: JEVgp1
subclass of: SO_0000673
so part of: JEVgp1
location: 6912..7676
location: region:6912-7676:1
so has part: feature:6912-7676:1:exon

NP_775673.1
type: Protein
SIO_000068: ncbiprotein

position:6912:1
position: 6912
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7676:1
position: 7676
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6912-7676:1:exon

JEVgp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 11072
gene: POLY
locus tag: JEVgp1
product: RNA-dependent RNA polymerase NS5
note: RdRp; nonstructural protein NS5; methyltransferase component of capping enzyme
SIO_010081: JEVgp1
subclass of: SO_0000673
so part of: JEVgp1
location: 7677..10391
location: region:7677-10391:1
so has part: feature:7677-10391:1:exon

NP_775674.1
type: Protein
SIO_000068: ncbiprotein

position:7677:1
position: 7677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10391:1
position: 10391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7677-10391:1:exon

JEVgp2
type: Gene
subclass of: SO_0000704
RO_0002162: 11072
locus tag: JEVgp2
so part of: sequence
location: 96..3691
location: region:96-3691:1
so has part: feature:96-3691:1:exon
subclass of: SO_0000010

12978160
type: Gene
SIO_000068: ncbigene

position:3691:1
position: 3691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:96-3691:1:exon

JEVgp2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 11072
locus tag: JEVgp2
note: Truncated version of JEV polyprotein that will be produced when frameshifting occurs at nt 3560; predicted to be produced from ribosomal frameshifting
codon start: 1
product: truncated JEV polyprotein
translation: MTKKPGGPGKNRAINMLKRGLPRVFPLVGVKRVVMSLLDGRGPVRFVLALITFFKFTALAPTKALLGRWKAVEKSVAMKHLTSFKRELGTLIDAVNKRGRKQNKRGGNEGSIMWLASLAVVIAYAGAMKLSNFQGKLLMTINNTDIADVIVIPTSKGENRCWVRAIDVGYMCEDTITYECPKLTMGNDPEDVDCWCDNQEVYVQYGRCTRTRHSKRSRRSVSVQTHGESSLVNKKEAWLDSTKATRYLMKTENWIIRNPGYAFLAATLGWMLGSNNGQRVVFTILLLLVAPAYSFNCLGMGNRDFIEGASGATWVDLVLEGDSCLTIMANDKPTLDVRMINIEASQLAEVRSYCYHASVTDISTVARCPTTGEAHNEKRADSSYVCKQGFTDRGWGNGCGLFGKGSIDTCAKFSCTSKAIGRTIQPENIKYEVGIFVHGTTTSENHGNYSAQVGASQAAKFTITPNAPSITLKLGDYGEVTLDCEPRSGLNTEAFYVMTVGSKSFLVHREWFHDLALPWTSPSSTAWRNRELLMEFEEAHATKQSVVALGSQEGGLHQALAGAIVVEYSSSVKLTSGHLKCRLKMDKLALKGTTYGMCTEKFSFAKNPADTGHGTVVIELSYSGSDGPCKIPIVSVASLNDMTPVGRLVTVNPFVATSSANSKVLVEMEPPFGDSYIVVGRGDKQINHHWHKAGSTLGKAFSTTLKGAQRLAALGDTAWDFGSIGGVFNSIGKAVHQVFGGAFRTLFGGMSWITQGLMGALLLWMGVNARDRSIALAFLATGGVLVFLATNVHADTGCAIDITRKEMRCGSGIFVHNDVEAWVDRYKYLPETPRSLAKIVHKAHKEGVCGVRSVTRLEHQMWEAVRDELNVLLKENAVDLSVVVNKPVGRYRSAPKRLSMTQEKFEMGWKAWGKSILFAPELANSTFVVDGPETKECPDEHRAWNSMQIEDFGFGITSTRVWLKIREESTDECDGAIIGTAVKGHVAVHSDLSYWIESRYNDTWKLERAVFGEVKSCTWPETHTLWGDGVEESELIIPHTIAGPKSKHNRREGYKTQNQGPWDENGIVLDFDYCPGTKVTITEDCGKRGPSVRTTTDSGKLITDWCCRSCSLPPLRFRTENGCWYGMEIRPVRHDETTLVRSQVDAFNGEMVDPFSAGPSGDVSGHPGGPSQEVDGQIDHSCGFGGPTCADAWGHHLH
SIO_010081: JEVgp2
subclass of: SO_0000673
so part of: JEVgp2
location: join(96..3560,3560..3691)
location: region:96-3691:1
so has part: feature:96-3560:1:exon
so has part: feature:3560-3691:1:exon

YP_006355435.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:96-3560:1:exon

position:3560:1
position: 3560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3560-3691:1:exon

JEVgp2
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 11072
locus tag: JEVgp2
product: NS1'
note: Transframe fusion protein, the mature peptide consists of the N-terminal portion of NS1 and the alternative reading frame translation that occurs after a programmed ribosomal frameshift; When frameshifting occurs, cleavage between NS1 and NS2A fails to occur; May be similar to NS1-NS2AN-FIFO protein.
citation: [1]
SIO_010081: JEVgp2
subclass of: SO_0000673
so part of: JEVgp2
location: join(2478..3560,3560..3688)
location: region:2478-3688:1
so has part: feature:2478-3560:1:exon
so has part: feature:3560-3688:1:exon

YP_006355436.1
type: Protein
SIO_000068: ncbiprotein

position:3688:1
position: 3688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2478-3560:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3560-3688:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 11072
note: conserved region
so part of: sequence
location: 10828..10847
location: region:10828-10847:1
so has part: feature:10828-10847:1:region

position:10828:1
position: 10828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10847:1
position: 10847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10828-10847:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 11072
note: conserved region
so part of: sequence
location: 10866..10888
location: region:10866-10888:1
so has part: feature:10866-10888:1:region

position:10866:1
position: 10866
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10888:1
position: 10888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10866-10888:1:region