Rickettsia australis str. Cutlack plasmid pMC5_1, complete sequence.
type: Entry
definition: Rickettsia australis str. Cutlack plasmid pMC5_1, complete sequence.
sequence version: NC_017041.1
sequence date: 2022-12-21
sequence: sequence
division: CON
label: NC_017041.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02603558
keyword: RefSeq
source: Rickettsia australis str. Cutlack
organism: Rickettsia australis str. Cutlack
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP003339.1.\nSequence data and annotation funded by the Intelligence Technology\nInnovation Center and Department of Homeland Security, Science and\nTechnology Directorate.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/21/2022 01:13:20\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,442\nCDSs (total) :: 1,402\nGenes (coding) :: 1,317\nCDSs (with protein) :: 1,317\nGenes (RNA) :: 40\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 33\nncRNAs :: 4\nPseudo Genes (total) :: 85\nCDSs (without protein) :: 85\nPseudo Genes (ambiguous residues) :: 0 of 85\nPseudo Genes (frameshifted) :: 56 of 85\nPseudo Genes (incomplete) :: 22 of 85\nPseudo Genes (internal stop) :: 43 of 85\nPseudo Genes (multiple problems) :: 31 of 85\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 26610
topology: circular
so has quality: SO_0000988
location: 1..26610
location: region:1-26610:1
RO_0002162: 1105110

NC_017041
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02603558
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Johnson, S.L.
author: Munk, A.C.
author: Han, S.
author: Bruce, D.C.
author: Dasch, G.A.
journal: Submitted (22-FEB-2012) Genome Science B6, Los Alamos National Laboratory, PO Box 1663 M888, Los Alamos, NM 87545, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26610:1
position: 26610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-26610:1:source
so part of: sequence
organism: Rickettsia australis str. Cutlack
mol type: genomic DNA
strain: Cutlack
plasmid: pMC5_1

1105110
type: Taxonomy
SIO_000068: taxonomy

MC5_RS06710
type: Gene
subclass of: SO_0000704
RO_0002162: 1105110
locus tag: MC5_RS06710
old locus tag: MC5_07520
so part of: sequence
location: join(26291..26610,1..679)
location: region:1-26610:1
so has part: feature:26291-26610:1:exon
so has part: feature:1-679:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:26291-26610:1:exon

position:26291:1
position: 26291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-679:1:exon

position:679:1
position: 679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

MC5_RS06710
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1105110
locus tag: MC5_RS06710
old locus tag: MC5_07520
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014407988.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Rpn family recombination-promoting nuclease/putative transposase
translation: MTNEEHNQRQQQTDISTNSGTSERPRHDALIRKALENPIVAKEFFEMHLPLEIKAMFSSHTLKIEKESFVEADLKTSISDILFSAKFQDDTGYLWILLEHQSTPDHFMAFRLFKYMTDIASRHLTLNPKLKHLPFVYPLVFYNGTKKYNAPRNIWDLCQHKELMQDIWTKDHKVVNVHDIPDEELKKKAWAGILQFFMKHIHERDLLKRWYEVADLLPEFAKMNIGIDYLELILTYTLIKIEKSDKIELEEILKSRLNNQQGEKLMTSLAHHWEQQGVAKGMQLGEARGMEIGEAKGKYEVAKNMLNAGSDISFISKVTGLSISELHQLFKS
SIO_010081: MC5_RS06710
subclass of: SO_0000673
so part of: MC5_RS06710
location: join(26291..26610,1..679)
location: region:1-26610:1
so has part: feature:26291-26610:1:exon
so has part: feature:1-679:1:exon

WP_014407988.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26291-26610:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-679:1:exon

MC5_RS06715
type: Gene
subclass of: SO_0000704
RO_0002162: 1105110
locus tag: MC5_RS06715
old locus tag: MC5_07385
so part of: sequence
location: complement(725..1057)
location: region:725-1057:-1
so has part: feature:725-1057:-1:exon
subclass of: SO_0000010

position:725:-1
position: 725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1057:-1
position: 1057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:725-1057:-1:exon

MC5_RS06715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1105110
locus tag: MC5_RS06715
old locus tag: MC5_07385
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014407989.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNDMLNNTISAHQAFKSSVDQKLYEYSKKLSVSAAHVVECNNYSFLKNMWLVGLFSAIVAGGTAYLVTTKFSRYLTVTGANNIIIQDCDVSVLGKAKDPDNLMEKITKKK
SIO_010081: MC5_RS06715
subclass of: SO_0000673
so part of: MC5_RS06715
location: complement(725..1057)
location: region:725-1057:-1
so has part: feature:725-1057:-1:exon

WP_014407989.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:725-1057:-1:exon

MC5_RS06720
type: Gene
subclass of: SO_0000704
RO_0002162: 1105110
locus tag: MC5_RS06720
old locus tag: MC5_07390
so part of: sequence
location: complement(1050..1253)
location: region:1050-1253:-1
so has part: feature:1050-1253:-1:exon
subclass of: SO_0000010

position:1050:-1
position: 1050
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1253:-1
position: 1253
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1050-1253:-1:exon

MC5_RS06720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1105110
locus tag: MC5_RS06720
old locus tag: MC5_07390
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014407990.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQNNLMMPLKHLSGLLLLKKNQYEILQNEVGVLAVLPETTKQAIEQIVPIVVHEINIAYHEQSAIYE
SIO_010081: MC5_RS06720
subclass of: SO_0000673
so part of: MC5_RS06720
location: complement(1050..1253)
location: region:1050-1253:-1
so has part: feature:1050-1253:-1:exon

WP_231290042.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1050-1253:-1:exon

MC5_RS06725
type: Gene
subclass of: SO_0000704
RO_0002162: 1105110
locus tag: MC5_RS06725
old locus tag: MC5_07395
so part of: sequence
location: 1386..6089
location: region:1386-6089:1
so has part: feature:1386-6089:1:exon
subclass of: SO_0000010

position:1386:1
position: 1386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6089:1
position: 6089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1386-6089:1:exon

MC5_RS06725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1105110
locus tag: MC5_RS06725
old locus tag: MC5_07395
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014407991.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ankyrin repeat domain-containing protein
translation: MKREEILSLKEQEKQNEAAKIIQQAYRNYRAYKLAEEVQGINPYKDSEKHLQKLKDKLKQGIGLSEKEIEARGKNILTKEEEKLVDVIINQFPWTLKHATPSYDMILERGNQLLSLRERKRLEGEVKNSHTPSDEGNDDNVFFTLGGPEHGLAGFVEDSAHTIAVDLKKYLDTKNKPQDILKGVWYGDHWYPYFRNARYASKMYGDTKRVAMHDKGDIYNGIAPTKTYEYIRKDGSILERTVTLGEETVQGRDIPEFVALNLVQELRYIGDSYRKKLLSNPSLKNIEPAIDIMFNSNIFEAKLPVKLQLDKKYISITANKKQEDIVNTPKNAALLHKAVKGLDYKQVEKLLQEGVSPDITVDGYTPFYNLVTGNADIKMAKLLIQYGADISKQMEGFLSTTPFDMATCGIEERLPLIPLMLESAVPNPRDSDIKSVVDINASSILNNAYNMIKKGDFNTLDLLIKHGLKLEQKDNTRLLNAAMQGLSKAREENLPQERYLKLIDDFASKYDQEKNKEAMVNDVTPTMLASQLGQTDIIEKLANAGHNPNQHLPAGIWKEPTTALMQATNTGNLDAVKKLLEVGAKLEEKDEFGRTAYYLAKTTSELTYEQFKNLSYKNERKTQQEYLKIINDSKDIADYLKSQGAKEIFQEQVLDYKEKENTVRVVVKGKDKEGVTKYLVGKEVEKEQRFMGVDYSDAMQHYSFPKIVVKTNDMELSTASPITLANKALFENTLIKLHNFTTDPAIELHHYDKVASQLENDVQLGPISSPLSYTLTTRRNLDTTLLFDVGNIDKIKPNITNGFADIRWITTEEAKDLKIDAIDKLLLDKGANPTQNLKTVLDQEFDRKYDGANLLLNKLLVNDKEGLIKLLDEGYNINALNADRFNVVLLAAYRDDCKDLLKAMIEKYGADVNLNTYGIRCGQNHKLNGASSLLDVAILKEDIELTKYLIAKGAEIKVDGFPGHVMQACNLAKKTDNMEILDLFFSQGVSIKEQPVIHELANKNFPKKIISYMIDKGGDVNLAGYGNNTPLSQAIREKNLDMAKFLVEKGADINKPLELRHEGYYDNIFEYAKKILAVDSAQYKDFVSFVTIHEAKKIGSTVKNSDVTINNAIKSEDMEVDKNTHIYLTTASTHLDKEGGRGAGSGDIDYTKTLEQSLKNALGKGSNVHYLSMNDEKSIFEHIEKNTPKGEQKILHMMINAPTIGFSFSKQGLKEFKENGGVIVATAVEFASRIAAPNLKPDTLKYLSYADQVIFLDENDKNQAIKYQQRHDKNNRALNNKLLESQIINVPPTVPVSDKRPEERGHDIISFGMIRAGKGFAHVRKLAELIKDSPDPLMKNKKILIAGTVQKDKISRDGKNYAYDGELYKLMKDIYPEKSDELYNKNPKELKELYEKYQQQNIKPALPIELHLDVPKQKLPELFDKCTYSFLPAYRGATLRNSSISSSLANKFITYSHINDQITPTNLKPGGAYSTSMVLQSNDDYNKYAENVFINISGREHNPKLNKKTWTEIERLNSNELDPAKIATQYLAGYSGAIKKQRLEQQELSGPKLQTRMGVARIFKCCR
SIO_010081: MC5_RS06725
subclass of: SO_0000673
so part of: MC5_RS06725
location: 1386..6089
location: region:1386-6089:1
so has part: feature:1386-6089:1:exon

WP_014407991.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1386-6089:1:exon

MC5_RS06735
type: Gene
subclass of: SO_0000704
RO_0002162: 1105110
locus tag: MC5_RS06735
old locus tag: MC5_07405
so part of: sequence
location: complement(6385..6753)
location: region:6385-6753:-1
so has part: feature:6385-6753:-1:exon
subclass of: SO_0000010

position:6385:-1
position: 6385
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6753:-1
position: 6753
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6385-6753:-1:exon

MC5_RS06735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1105110
locus tag: MC5_RS06735
old locus tag: MC5_07405
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014407993.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MKYNKICKNKSWQQMHIAMDPEMNIHDVEITDCHTADIEMLESLIPENISVDRVIADGAYYSIEGIKTLSNRGITPVIPPSRNAKIYGQDNTIWHDKVVGYISKKGNIYAFYKKFCYGIRTN
SIO_010081: MC5_RS06735
subclass of: SO_0000673
so part of: MC5_RS06735
location: complement(6385..6753)
location: region:6385-6753:-1
so has part: feature:6385-6753:-1:exon

WP_014407993.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6385-6753:-1:exon

MC5_RS06740
type: Gene
subclass of: SO_0000704
RO_0002162: 1105110
locus tag: MC5_RS06740
old locus tag: MC5_07410
so part of: sequence
location: complement(7096..7356)
location: region:7096-7356:-1
so has part: feature:7096-7356:-1:exon
subclass of: SO_0000010

position:7096:-1
position: 7096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7356:-1
position: 7356
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7096-7356:-1:exon

MC5_RS06740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1105110
locus tag: MC5_RS06740
old locus tag: MC5_07410
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAIIVELVSAPFVNSHKDLACAASRNASNSCALLQKPHSQKSTKYKAARLVNDSHGHNKQFLSASFTSKIITVLISFLKLDKYDDA
SIO_010081: MC5_RS06740
subclass of: SO_0000673
so part of: MC5_RS06740
location: complement(7096..7356)
location: region:7096-7356:-1
so has part: feature:7096-7356:-1:exon

WP_014407994.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7096-7356:-1:exon

MC5_RS06745
type: Gene
subclass of: SO_0000704
RO_0002162: 1105110
locus tag: MC5_RS06745
old locus tag: MC5_07415
so part of: sequence
location: complement(7657..7890)
location: region:7657-7890:-1
so has part: feature:7657-7890:-1:exon
subclass of: SO_0000010

position:7657:-1
position: 7657
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7890:-1
position: 7890
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7657-7890:-1:exon

MC5_RS06745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1105110
locus tag: MC5_RS06745
old locus tag: MC5_07415
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRKKKFDLTSDLVEVSHATQIAKANNENKASSKVVLITLSIEEARRADFKSWCARHRFKMNEAFMEGFKLLKEKHGE
SIO_010081: MC5_RS06745
subclass of: SO_0000673
so part of: MC5_RS06745
location: complement(7657..7890)
location: region:7657-7890:-1
so has part: feature:7657-7890:-1:exon

WP_014407995.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7657-7890:-1:exon

MC5_RS06750
type: Gene
subclass of: SO_0000704
RO_0002162: 1105110
locus tag: MC5_RS06750
old locus tag: MC5_07420
so part of: sequence
location: complement(7859..8512)
location: region:7859-8512:-1
so has part: feature:7859-8512:-1:exon
subclass of: SO_0000010

position:7859:-1
position: 7859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8512:-1
position: 8512
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7859-8512:-1:exon

MC5_RS06750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1105110
locus tag: MC5_RS06750
old locus tag: MC5_07420
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010304023.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MKILTIANRKGGAGKSTCAAHIALEAVKKGKKTILIDLDPQKTLENWWKKREDSNPFLTDIDPYNIENAISKLNMHNFDLCIIDTPGDTSINAINGIKVADLVLIPSKPTSPDLAAIGRTISMVKAESKNFIFVITQAVSRTKLAVQGVSILSEFGVVAPSTISNRVSYANAMNIGSSASADDKVALEELTAIWSFINDKLFTTGDYHEKEKIRFDI
SIO_010081: MC5_RS06750
subclass of: SO_0000673
so part of: MC5_RS06750
location: complement(7859..8512)
location: region:7859-8512:-1
so has part: feature:7859-8512:-1:exon

WP_014407996.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7859-8512:-1:exon

MC5_RS06755
type: Gene
subclass of: SO_0000704
RO_0002162: 1105110
locus tag: MC5_RS06755
old locus tag: MC5_07425
so part of: sequence
location: 8659..8874
location: region:8659-8874:1
so has part: feature:8659-8874:1:exon
subclass of: SO_0000010

position:8659:1
position: 8659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8874:1
position: 8874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8659-8874:1:exon

MC5_RS06755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1105110
locus tag: MC5_RS06755
old locus tag: MC5_07425
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014407997.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAKTITFSFSVPVDLAILIEEKLETDKITRSELIKRALWNFLDKQNDNKIINRLNEIQQDLLEVKNILQNK
SIO_010081: MC5_RS06755
subclass of: SO_0000673
so part of: MC5_RS06755
location: 8659..8874
location: region:8659-8874:1
so has part: feature:8659-8874:1:exon

WP_014407997.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8659-8874:1:exon

MC5_RS06760
type: Gene
subclass of: SO_0000704
RO_0002162: 1105110
locus tag: MC5_RS06760
old locus tag: MC5_07430
so part of: sequence
location: 9001..11373
location: region:9001-11373:1
so has part: feature:9001-11373:1:exon
subclass of: SO_0000010

position:9001:1
position: 9001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11373:1
position: 11373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9001-11373:1:exon

MC5_RS06760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1105110
locus tag: MC5_RS06760
old locus tag: MC5_07430
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014407998.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DnaA N-terminal domain-containing protein
translation: MSTLSWSQTDISNTHDTKSFLYIYGRQSYIPITGCILSRILSCSELSSLEKIYYILADSLSCINSSKGRNRSVSLPAKSWAKRLSCSKSEVFILQHSLEDKGYFLIQRDKNDKGQNNRNIITTTIPDKVFNDLKFEPDRFDLCDINDEATHQNNSKSLEHIDKIFIPTIEGKRQHLEKTKMFIMVPYLFLKQLNSNCSISATSKVIMLYLFTKLYKSSANKYNYDESDSAVTHNSYSIVTSYRELRKELKLHRNSLAKALKTLEDNNLISKHRFFIKDKEDYHSRADKSLWQISVLNVPLITNSNDQHKQTDRAEQNYQEEHIGQKQAMISDQAKLGYNDNQALESSKELECTKYDPACTDSSQLYNKNFVLKDSIVENIDYIDANYPNYKNLSLNNPSEYLQSTKIVKKEFLENELCSFPSESCNNSFTYSVNAKQHCTNTTSEPTSRTVKDISVKAREVVKSVGQKPNIDHTTTIKKTTSQKELRYFYPLSEKDIDTLNLRANREFSTNFVNQLLLKLYIKYPEKRFKNKFTFLSYMEKVLKNEKHQGPLVNHTTFRFSCNINVEEKNSLEYEKYLNQIENSLDTSKEMQVRKKIAGRFSTEVAYQILKQIEFKTSNDNRFITAIIPNQPALSERKIEILSAQIEAVYGNNGYYVTTVGDVDVGYAVGGKRKVERKEEIEKQYSKIKPSAIISNSKYIRTLDSSKGLDKIEENAAWNHIRQGLIEELGEAIDGTWFAKAVAKECKETGTLMLKMPTRFMADWIRNNYSHVIRKFAGSVGVKIVEYCYE
SIO_010081: MC5_RS06760
subclass of: SO_0000673
so part of: MC5_RS06760
location: 9001..11373
location: region:9001-11373:1
so has part: feature:9001-11373:1:exon

WP_014407998.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9001-11373:1:exon

MC5_RS08855
type: Gene
subclass of: SO_0000704
RO_0002162: 1105110
locus tag: MC5_RS08855
so part of: sequence
location: 11953..12300
location: region:11953-12300:1
so has part: feature:11953-12300:1:exon
subclass of: SO_0000010

position:11953:1
position: 11953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12300:1
position: 12300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11953-12300:1:exon

MC5_RS08855
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1105110
locus tag: MC5_RS08855
inference: COORDINATES: protein motif:HMM:NF013862.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVLAEIEERTGKSISELFPIITSTSVGGLIGALLTIPKEPRSNIAKYSAKDAVKIFTDAAPKIFEHHWYDGIKQIFTHKHSQEPLKEILDHHLAELRLDDTTSKLIIPVTDLASP
SIO_010081: MC5_RS08855
subclass of: SO_0000673
so part of: MC5_RS08855
location: 11953..12300
location: region:11953-12300:1
so has part: feature:11953-12300:1:exon

WP_025999612.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11953-12300:1:exon

MC5_RS08860
type: Gene
subclass of: SO_0000704
RO_0002162: 1105110
gene: dcm
locus tag: MC5_RS08860
pseudo: true
so part of: sequence
location: <12801..13371
location: region:12801-13371:1
so has part: feature:12801-13371:1:exon
subclass of: SO_0000010

position:12801:1
position: 12801
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:13371:1
position: 13371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12801-13371:1:exon

MC5_RS08860
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1105110
gene: dcm
locus tag: MC5_RS08860
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002360945.1
GO function: GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IEA]
GO process: GO:0006304 - DNA modification [Evidence IEA]
note: frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DNA (cytosine-5-)-methyltransferase
SIO_010081: MC5_RS08860
subclass of: SO_0000673
so part of: MC5_RS08860
location: <12801..13371
location: region:12801-13371:1
so has part: feature:12801-13371:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12801-13371:1:exon

MC5_RS08865
type: Gene
subclass of: SO_0000704
RO_0002162: 1105110
locus tag: MC5_RS08865
pseudo: true
so part of: sequence
location: 13562..14044
location: region:13562-14044:1
so has part: feature:13562-14044:1:exon
subclass of: SO_0000010

position:13562:1
position: 13562
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14044:1
position: 14044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13562-14044:1:exon

MC5_RS08865
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1105110
locus tag: MC5_RS08865
inference: COORDINATES: protein motif:HMM:NF036348.2
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DUF5424 family protein
SIO_010081: MC5_RS08865
subclass of: SO_0000673
so part of: MC5_RS08865
location: 13562..14044
location: region:13562-14044:1
so has part: feature:13562-14044:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13562-14044:1:exon

MC5_RS06775
type: Gene
subclass of: SO_0000704
RO_0002162: 1105110
locus tag: MC5_RS06775
old locus tag: MC5_07455
so part of: sequence
location: 14186..15394
location: region:14186-15394:1
so has part: feature:14186-15394:1:exon
subclass of: SO_0000010

position:14186:1
position: 14186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15394:1
position: 15394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14186-15394:1:exon

MC5_RS06775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1105110
locus tag: MC5_RS06775
old locus tag: MC5_07455
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014407999.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNKQSAHMVAQIRAKQLATKYSQNKVQAIIIEYCEQHPDISDAEIASVVTHNLQTYENISGSINNYLKDQNLHDIGFPIKYNKTSLQLNMAKQWAEQQGEELISQIKNGVFYHELTNTIDHDKLPILQSSSDQEYWGNENPSVSSALLLSIAASCTKEKKIMPGAATSFPFLNLGYELPDALVPTSYPFASKNGMILVGDYQYGAHRYFKEQLLFGPEDCSTAVGKATYLTTEQIQSINTINMQAAYNDPANEYHYKAITFLSGDVKDEQLKLIQPGDIYLVKGHTAIIVTQPDNKSNITTLQFTRDIDTPVDKRLGGGLYDYNLCNKVKEIKTGIYILRPDLEPLHESCSLSQLLKQIDLKYITLFPENPIDIPGDCRIFLENDETSVIGDITAASLSVEF
SIO_010081: MC5_RS06775
subclass of: SO_0000673
so part of: MC5_RS06775
location: 14186..15394
location: region:14186-15394:1
so has part: feature:14186-15394:1:exon

WP_231290039.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14186-15394:1:exon

MC5_RS06780
type: Gene
subclass of: SO_0000704
RO_0002162: 1105110
locus tag: MC5_RS06780
old locus tag: MC5_07460
so part of: sequence
location: complement(15403..15975)
location: region:15403-15975:-1
so has part: feature:15403-15975:-1:exon
subclass of: SO_0000010

position:15403:-1
position: 15403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15975:-1
position: 15975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15403-15975:-1:exon

MC5_RS06780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1105110
locus tag: MC5_RS06780
old locus tag: MC5_07460
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014408000.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MLVGYMRVSSENDRQVFDLQYDALIKEGVDPRHIFQDKASGAKDNRKGLQEVLDYLQDGDCLIVWKLDRLGRSLSHLITLIDGFKQKNIGFKSITEQMDTTTPHGEFLFSVFGALAQYERALTKERIMAGLKSAKKRGKTGGRPRVISPEKMQAISEALKSGTSKAAICRTFNVKRTTLYNNLDKMITCL
SIO_010081: MC5_RS06780
subclass of: SO_0000673
so part of: MC5_RS06780
location: complement(15403..15975)
location: region:15403-15975:-1
so has part: feature:15403-15975:-1:exon

WP_014408000.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15403-15975:-1:exon

MC5_RS08030
type: Gene
subclass of: SO_0000704
RO_0002162: 1105110
locus tag: MC5_RS08030
pseudo: true
so part of: sequence
location: complement(16165..18146)
location: region:16165-18146:-1
so has part: feature:16165-18146:-1:exon
subclass of: SO_0000010

position:16165:-1
position: 16165
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18146:-1
position: 18146
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16165-18146:-1:exon

MC5_RS08030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1105110
locus tag: MC5_RS08030
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013747303.1
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: AAA family ATPase
SIO_010081: MC5_RS08030
subclass of: SO_0000673
so part of: MC5_RS08030
location: complement(16165..18146)
location: region:16165-18146:-1
so has part: feature:16165-18146:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16165-18146:-1:exon

MC5_RS08035
type: Gene
subclass of: SO_0000704
RO_0002162: 1105110
locus tag: MC5_RS08035
old locus tag: MC5_07480
so part of: sequence
location: complement(18176..18409)
location: region:18176-18409:-1
so has part: feature:18176-18409:-1:exon
subclass of: SO_0000010

position:18176:-1
position: 18176
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18409:-1
position: 18409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18176-18409:-1:exon

MC5_RS08035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1105110
locus tag: MC5_RS08035
old locus tag: MC5_07480
inference: COORDINATES: protein motif:HMM:NF017243.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: WGR domain-containing protein
translation: MNIDYYWTKDHKYYRLTTQANLFGTTDLICSWGSLYSNKGNYKVIHCTTQHEIDTHIKRITRIRKSRGYILIHTKKA
SIO_010081: MC5_RS08035
subclass of: SO_0000673
so part of: MC5_RS08035
location: complement(18176..18409)
location: region:18176-18409:-1
so has part: feature:18176-18409:-1:exon

WP_014408004.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18176-18409:-1:exon

MC5_RS06800
type: Gene
subclass of: SO_0000704
RO_0002162: 1105110
locus tag: MC5_RS06800
old locus tag: MC5_07490
so part of: sequence
location: complement(18834..19058)
location: region:18834-19058:-1
so has part: feature:18834-19058:-1:exon
subclass of: SO_0000010

position:18834:-1
position: 18834
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19058:-1
position: 19058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18834-19058:-1:exon

MC5_RS06800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1105110
locus tag: MC5_RS06800
old locus tag: MC5_07490
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008581517.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraD
translation: MQLQKAVAFDRKTDARKKIMLGGLFVKAGLDYLHPDNAHILYGMLLDCKEQLIINPQIIDKWQSKGRALLISKH
SIO_010081: MC5_RS06800
subclass of: SO_0000673
so part of: MC5_RS06800
location: complement(18834..19058)
location: region:18834-19058:-1
so has part: feature:18834-19058:-1:exon

WP_014408006.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18834-19058:-1:exon

MC5_RS06805
type: Gene
subclass of: SO_0000704
RO_0002162: 1105110
locus tag: MC5_RS06805
old locus tag: MC5_07495
so part of: sequence
location: complement(19090..19404)
location: region:19090-19404:-1
so has part: feature:19090-19404:-1:exon
subclass of: SO_0000010

position:19090:-1
position: 19090
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19404:-1
position: 19404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19090-19404:-1:exon

MC5_RS06805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1105110
locus tag: MC5_RS06805
old locus tag: MC5_07495
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014408007.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MATKILGTATKLANLEQLKKERIAKIEAQLAHQQTQLLQKRKEELFNIFRTCNALTIDDRLLIGFLKFLKNSDNKNHPFLNELKEVHKKSKMPSKPQSGNVKTD
SIO_010081: MC5_RS06805
subclass of: SO_0000673
so part of: MC5_RS06805
location: complement(19090..19404)
location: region:19090-19404:-1
so has part: feature:19090-19404:-1:exon

WP_014408007.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19090-19404:-1:exon

MC5_RS06810
type: Gene
subclass of: SO_0000704
RO_0002162: 1105110
locus tag: MC5_RS06810
old locus tag: MC5_07500
so part of: sequence
location: 19744..24150
location: region:19744-24150:1
so has part: feature:19744-24150:1:exon
subclass of: SO_0000010

position:19744:1
position: 19744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24150:1
position: 24150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19744-24150:1:exon

MC5_RS06810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1105110
locus tag: MC5_RS06810
old locus tag: MC5_07500
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014408008.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobA/MobL family protein
translation: MALMYFSISSVQRSKGQNAIATAAYIAASKLVYKTIDKESGEAISITYDFTKKKGVTYSKIFVPEGLEDVAWLQDREQLWNTAEARETRNDARTAEKICFALPREVSEEKNIELVEEYVNKNLVARGIVCDVNIHYDNVDNPHVHFQFLTRRLERLDNGEVILGKIKARDIKTTKAVYNFRKQCEVEINKVYEEVGLPFRVTAKSFKELGLDQNPTRHKGPAHYMKATELEAKNQAIIIENARKIYENPEIVFGRISYTQPVFTKEDIAIALSDTLMVHLVSKDSDITKQQKAIRAFGRGLVQEQGSSKDAAQNIKNNSVVMAANDQADSSTNNPAIEHLNKEYGDEFLRLYNQLLVSDQIDLMDQKDLMGRTLYSLKSRVNLERRYVSAIEELNAKAAHKLNILDSTIGDRNSLKEQIGKLVYVVGAKLQNKFNDKIGGSLGLKLNIFGSKTNEFSSEQIEAILSVCNGSDVSVLEGNPGSVKTFVMREIVHQYKAAGFKVVGTGPSSISAKVLSRNAGIKADNTSLLRTKIEESRGANFKLDLSSKYYEEEEYLKSIGCDAVFSGKPEEVLDSKSVLIVDKASMIELANMDYLAYEVLRSKAKLVLVGDNNQFTAVGMTGAFNKARKIAGCFKLTKVRRQENIEHRKATEAMGRFAMIDAIEIYRKLDIFNINDNEEEAKTSLVASFAKEYTEQMESLKRDDLIAIRSIAIGAYTNEKVAEFNSKVRSELKHRGALKGQEVLISSGGRMLPLMKGDQIVFDENSLRYGISNGEVGTILSVKPSVKSFSGSTNSNGESDGNGLLKILVHKADGSKDIINIDTAADAANNKRRIKLNHGYALTGYKLQGETVDRMHVYFDRSIGYEAFLVLMSRHREAVTLHASAQELEGLVYQRLDSDVEKVRKQFKINSYEMRDETRINSAGEEYTVKVKEEIPNWLIGLTLAVSRRANNSFAIDYKSDRLLDGNQIIIKEYLEARSRVFECHGKLREWQSNIETTGNITRLHRNIELAAKAFNVSLEVNIKDLKIDPYGMISADNKDISVQDIFKEAVKVQTDYEATGAKLRFSDLSVKQSNSLIASCLPSATREELMQLYSTLQLAKEGMQKHASLICSSYHISNNGTASMGERIIQLNLNYETIQKHAGIAPYKYYLQYISAHSSLNSCSSYQNLIELARDVISNNQHASHALTNSKLMSLVNSYIAGIDNYNWDNKALIALKRCDLLESQKALSDLKQEEQVSGHFVQTLLPNYLGRIYEQQGAAVIEKWEAVKAANSNRDVKELIERVQSNPSILGKLPGIGIGMIFGVSTSRRKSIEHVGKLGVQLLRYEESMSRLNEIKDNDLIKEQEQKIVVLKEELNVLESLKASNAEEKFLSSLKTMQAGSGLNIKSFKSLIESDEVQDLLCEYYNNQNEQYTRINEPDRAAVEQEDVQSVTTNSNTNTLSNTGKGTSRRRERSSTKEPVLRFDKV
SIO_010081: MC5_RS06810
subclass of: SO_0000673
so part of: MC5_RS06810
location: 19744..24150
location: region:19744-24150:1
so has part: feature:19744-24150:1:exon

WP_014408008.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19744-24150:1:exon

MC5_RS06815
type: Gene
subclass of: SO_0000704
RO_0002162: 1105110
locus tag: MC5_RS06815
old locus tag: MC5_07505
so part of: sequence
location: 24395..24715
location: region:24395-24715:1
so has part: feature:24395-24715:1:exon
subclass of: SO_0000010

position:24395:1
position: 24395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24715:1
position: 24715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24395-24715:1:exon

MC5_RS06815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1105110
locus tag: MC5_RS06815
old locus tag: MC5_07505
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014408009.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNWGQLKGCNVIIWPDNDEPGFKAAEVIKDKLNKANNHIGFVSIVDPSRLQFNGSVYKDLLPEKWDLADKMPEGMTIANLKEAIENVRAAHLDIQANTERISWCSL
SIO_010081: MC5_RS06815
subclass of: SO_0000673
so part of: MC5_RS06815
location: 24395..24715
location: region:24395-24715:1
so has part: feature:24395-24715:1:exon

WP_231290040.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24395-24715:1:exon

MC5_RS09605
type: Gene
subclass of: SO_0000704
RO_0002162: 1105110
locus tag: MC5_RS09605
so part of: sequence
location: 24726..25658
location: region:24726-25658:1
so has part: feature:24726-25658:1:exon
subclass of: SO_0000010

position:24726:1
position: 24726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25658:1
position: 25658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24726-25658:1:exon

MC5_RS09605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1105110
locus tag: MC5_RS09605
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLAEESSEVVGTAKTVKQQALHVSQLLKRNIWQWVFKGKIVDAEKITILSANASKVSTFFSSEESNNYVKYLEATGKGGVAHDYLKYDSFMYQDMFTNLAMRDERLSGNIKELSNSISKQNQTQDISSNSTTSIETIGTKTKLIDDTQNLYEKKVLEYDSTAGTYAVYRDYLELMVQNFGESHEKVTLYKNIVRDVSIPHSAQLGMNINDLPDSHHKEIARDVYSTISEYHNRYALDAADKNKIANAVYEEHCSLKAWEQKSYEQVTTSYKVYADYQERLEQIKYTTFNYEFVDLGNKLLNTRNKNFYLN
SIO_010081: MC5_RS09605
subclass of: SO_0000673
so part of: MC5_RS09605
location: 24726..25658
location: region:24726-25658:1
so has part: feature:24726-25658:1:exon

WP_017208739.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24726-25658:1:exon

MC5_RS06825
type: Gene
subclass of: SO_0000704
RO_0002162: 1105110
locus tag: MC5_RS06825
so part of: sequence
location: 25782..26177
location: region:25782-26177:1
so has part: feature:25782-26177:1:exon
subclass of: SO_0000010

position:25782:1
position: 25782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26177:1
position: 26177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25782-26177:1:exon

MC5_RS06825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1105110
locus tag: MC5_RS06825
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTAISRELEFFKSLDGKLKYADQYDSSILSAISNAKTIEQDTLITNMHNMVIYAQKHGILNDQEILNQFNSSDSHNVLKNLSKTCEKHYMEHHNENIKQLLDDEHVMVGSKKYSCPLQYMKHEMQNNIPTL
SIO_010081: MC5_RS06825
subclass of: SO_0000673
so part of: MC5_RS06825
location: 25782..26177
location: region:25782-26177:1
so has part: feature:25782-26177:1:exon

WP_017208738.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25782-26177:1:exon