Rickettsia australis str. Cutlack plasmid pMC5_1, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group.
Submitted (22-FEB-2012) Genome Science B6, Los Alamos National Laboratory, PO Box 1663 M888, Los Alamos, NM 87545, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP003339.1.\nSequence data and annotation funded by the Intelligence Technology\nInnovation Center and Department of Homeland Security, Science and\nTechnology Directorate.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/21/2022 01:13:20\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,442\nCDSs (total) :: 1,402\nGenes (coding) :: 1,317\nCDSs (with protein) :: 1,317\nGenes (RNA) :: 40\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 33\nncRNAs :: 4\nPseudo Genes (total) :: 85\nCDSs (without protein) :: 85\nPseudo Genes (ambiguous residues) :: 0 of 85\nPseudo Genes (frameshifted) :: 56 of 85\nPseudo Genes (incomplete) :: 22 of 85\nPseudo Genes (internal stop) :: 43 of 85\nPseudo Genes (multiple problems) :: 31 of 85\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_014407988.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
Rpn family recombination-promoting nuclease/putative transposase
COORDINATES: similar to AA sequence:RefSeq:WP_014407989.1
COORDINATES: similar to AA sequence:RefSeq:WP_014407990.1
COORDINATES: similar to AA sequence:RefSeq:WP_014407991.1
ankyrin repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014407993.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_010304023.1
COORDINATES: similar to AA sequence:RefSeq:WP_014407997.1
COORDINATES: similar to AA sequence:RefSeq:WP_014407998.1
DnaA N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF013862.2
COORDINATES: similar to AA sequence:RefSeq:WP_002360945.1
GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF036348.2
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014407999.1
COORDINATES: similar to AA sequence:RefSeq:WP_014408000.1
COORDINATES: similar to AA sequence:RefSeq:WP_013747303.1
COORDINATES: protein motif:HMM:NF017243.2
COORDINATES: similar to AA sequence:RefSeq:WP_008581517.1
COORDINATES: similar to AA sequence:RefSeq:WP_014408007.1
COORDINATES: similar to AA sequence:RefSeq:WP_014408008.1
COORDINATES: similar to AA sequence:RefSeq:WP_014408009.1