Equine arteritis virus, complete genome.
type: Entry
definition: Equine arteritis virus, complete genome.
sequence version: NC_002532.2
sequence date: 2018-08-13
sequence: sequence
division: VRL
label: NC_002532.2
type: RefSeq
SIO_000068: refseq
dblink: PRJNA485481
keyword: RefSeq
keyword: complete genome
keyword: envelope protein
keyword: glycoprotein 2b
keyword: glycoprotein 3
keyword: glycoprotein 4
keyword: glycoprotein 5
keyword: membrane protein
keyword: nucleocapsid gene
keyword: ORF1a
keyword: ORF1ab
keyword: ORF2
keyword: ORF2a
keyword: ORF3
keyword: ORF4
keyword: ORF5
keyword: ORF6
keyword: ORF7
keyword: replicase polyprotein
keyword: ribosomal frameshift signal
source: Equine arteritis virus
organism: Equine arteritis virus
taxonomy: Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Nidovirales; Arteriviridae.
reference: 1
references: 10725411
reference: 2
references: 10400725
reference: 3
references: 9603311
reference: 4
references: 1851863
reference: 5
reference: 6
reference: 7
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence was derived from X53459.\nOn Jul 2, 2001 this sequence version replaced NC_002532.1.\nSee also <X52275> to <X52277> for overlapping sequence. The mature\npeptides were annotated by the NCBI staff as indicated in reference\n4 and with the help of Dr. Alexander Gorbalenya (Leiden University\nMedical Center, The Netherlands).\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000353
sequence length: 12704
topology: linear
so has quality: SO_0000987
location: 1..12704
location: region:1-12704:1
RO_0002162: 11047

NC_002532
type: RefSeq
SIO_000068: refseq

PRJNA485481
type: BioProject
SIO_000068: bioproject

1
title: Virus-encoded proteinases and proteolytic processing in the Nidovirales
author: Ziebuhr, J.
author: Snijder, E.J.
author: Gorbalenya, A.E.
journal: J. Gen. Virol. 81 (Pt 4), 853-879 (2000)
pubmed: 10725411

10725411
type: PubMed
SIO_000068: pubmed

2
title: Identification of a novel structural protein of arteriviruses
author: Snijder, E.J.
author: van Tol, H.
author: Pedersen, K.W.
author: Raamsman, M.J.
author: de Vries, A.A.
journal: J. Virol.
volume: 73
issue: 8
pages: 6335-6345
year: 1999
pubmed: 10400725

10400725
type: PubMed
SIO_000068: pubmed

3
title: The molecular biology of arteriviruses
author: Snijder, E.J.
author: Meulenberg, J.J.
journal: J. Gen. Virol. 79 (Pt 5), 961-979 (1998)
pubmed: 9603311

9603311
type: PubMed
SIO_000068: pubmed

4
title: Equine arteritis virus is not a togavirus but belongs to the coronaviruslike superfamily
author: den Boon, J.A.
author: Snijder, E.J.
author: Chirnside, E.D.
author: de Vries, A.A.
author: Horzinek, M.C.
author: Spaan, W.J.
journal: J. Virol.
volume: 65
issue: 6
pages: 2910-2920
year: 1991
pubmed: 1851863

1851863
type: PubMed
SIO_000068: pubmed

5
title: Direct Submission
author: Snijder, E.J.
journal: Submitted (22-JUN-2001) E.J. Snijder, Department of Virology, Leiden University Medical center LUMC P4-26, PO Box 9600, 2300 RC Leiden, The Netherlands

6
title: Direct Submission
journal: Submitted (10-AUG-2000) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

7
title: Direct Submission
author: Spaan, W.J.M.
journal: Submitted (25-MAY-1990) Spaan W.J.M., Dept. of Virology, Institute of Medical Microbiology, Faculty of Medicine, State University of Leiden, The Netherlands
comments: revised by [3]

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12704:1
position: 12704
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12704:1:source
so part of: sequence
organism: Equine arteritis virus
mol type: genomic RNA
strain: Bucyrus
cell line: EAV-infected BHK-21 cells

11047
type: Taxonomy
SIO_000068: taxonomy

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 11047
note: EAV leader sequence
so part of: sequence
location: 1..211
location: region:1-211:1
so has part: feature:1-211:1:region

position:211:1
position: 211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-211:1:region

EAVgp1
type: Gene
subclass of: SO_0000704
RO_0002162: 11047
gene: 1ab
locus tag: EAVgp1
so part of: sequence
location: 225..9751
location: region:225-9751:1
so has part: feature:225-9751:1:exon
subclass of: SO_0000010

921339
type: Gene
SIO_000068: ncbigene

position:225:1
position: 225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9751:1
position: 9751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:225-9751:1:exon

EAVgp1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 11047
gene: 1ab
locus tag: EAVgp1
ribosomal slippage: true
note: ORF1ab; slippery sequence causes -1 frameshift
codon start: 1
product: replicase ORF1ab polyprotein
translation: MATFSATGFGGSFVRDWSLDLPDACEHGAGLCCEVDGSTLCAECFRGCEGMEQCPGLFMGLLKLASPVPVGHKFLIGWYRAAKVTGRYNFLELLQHPAFAQLRVVDARLAIEEASVFISTDHASAKRFPGARFALTPVYANAWVVSPAANSLIVTTDQEQDGFCWLKLLPPDRREAGLRLYYNHYREQRTGWLSKTGLRLWLGDLGLGINASSGGLKFHIMRGSPQRAWHITTRSCKLKSYYVCDISEADWSCLPAGNYGGYNPPGDGACGYRCLAFMNGATVVSAGCSSDLWCDDELAYRVFQLSPTFTVTIPGGRVCPNAKYAMICDKQHWRVKRAKGVGLCLDESCFRGICNCQRMSGPPPAPVSAAVLDHILEAATFGNVRVVTPEGQPRPVPAPRVRPSANSSGDVKDPAPVPPVPKPRTKLATPNPTQAPIPAPRTRLQGASTQEPLASAGVASDSAPKWRVAKTVYSSAERFRTELVQRARSVGDVLVQALPLKTPAVQRYTMTLKMMRSRFSWHCDVWYPLAVIACLLPIWPSLALLLSFAIGLIPSVGNNVVLTALLVSSANYVASMDHQCEGAACLALLEEEHYYRAVRWRPITGALSLVLNLLGQVGYVARSTFDAAYVPCTVFDLCSFAILYLCRNRCWRCFGRCVRVGPATHVLGSTGQRVSKLALIDLCDHFSKPTIDVVGMATGWSGCYTGTAAMERQCASTVDPHSFDQKKAGATVYLTPPVNSGSALQCLNVMWKRPIGSTVLGEQTGAVVTAVKSISFSPPCCVSTTLPTRPGVTVVDHALYNRLTASGVDPALLRVGQGDFLKLNPGFRLIGGWIYGICYFVLVVVSTFTCLPIKCGIGTRDPFCRRVFSVPVTKTQEHCHAGMCASAEGISLDSLGLTQLQSYWIAAVTSGLVILLVCHRLAISALDLLTLASPLVLLVFPWASVGLLLACSLAGAAVKIQLLATLFVNLFFPQATLVTMGYWACVAALAVYSLMGLRVKVNVPMCVTPAHFLLLARSAGQSREQMLRVSAAAPTNSLLGVARDCYVTGTTRLYIPKEGGMVFEGLFRSPKARGNVGFVAGSSYGTGSVWTRNNEVVVLTASHVVGRANMATLKIGDAMLTLTFKKNGDFAEAVTTQSELPGNWPQLHFAQPTTGPASWCTATGDEEGLLSGEVCLAWTTSGDSGSAVVQGDAVVGVHTGSNTSGVAYVTTPSGKLLGADTVTLSSLSKHFTGPLTSIPKDIPDNIIADVDAVPRSLAMLIDGLSNRESSLSGPQLLLIACFMWSYLNQPAYLPYVLGFFAANFFLPKSVGRPVVTGLLWLCCLFTPLSMRLCLFHLVCATVTGNVISLWFYITAAGTSYLSEMWFGGYPTMLFVPRFLVYQFPGWAIGTVLAVCSITMLAAALGHTLLLDVFSASGRFDRTFMMKYFLEGGVKESVTASVTRAYGKPITQESLTATLAALTDDDFQFLSDVLDCRAVRSAMNLRAALTSFQVAQYRNILNASLQVDRDAARSRRLMAKLADFAVEQEVTAGDRVVVIDGLDRMAHFKDDLVLVPLTTKVVGGSRCTICDVVKEEANDTPVKPMPSRRRRKGLPKGAQLEWDRHQEEKRNAGDDDFAVSNDYVKRVPKYWDPSDTRGTTVKIAGTTYQKVVDYSGNVHYVEHQEDLLDYVLGKGSYEGLDQDKVLDLTNMLKVDPTELSSKDKAKARQLAHLLLDLANPVEAVNQLNLRAPHIFPGDVGRRTFADSKDKGFVALHSRTMFLAARDFLFNIKFVCDEEFTKTPKDTLLGYVRACPGYWFIFRRTHRSLIDAYWDSMECVYALPTISDFDVSPGDVAVTGERWDFESPGGGRAKRLTADLVHAFQGFHGASYSYDDKVAAAVSGDPYRSDGVLYNTRWGNIPYSVPTNALEATACYRAGCEAVTDGTNVIATIGPFPEQQPIPDIPKSVLDNCADISCDAFIAPAAETALCGDLEKYNLSTQGFVLPSVFSMVRAYLKEEIG…
SIO_010081: EAVgp1
subclass of: SO_0000673
so part of: EAVgp1
location: join(225..5405,5405..9751)
location: region:225-9751:1
so has part: feature:225-5405:1:exon
so has part: feature:5405-9751:1:exon

NP_127506.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:225-5405:1:exon

position:5405:1
position: 5405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5405-9751:1:exon

EAVgp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 11047
gene: 1ab
locus tag: EAVgp1
product: nsp1 (PCP1b)
experiment: experimental evidence, no additional details recorded
note: papain-like cysteine proteinase 1b preceeded by non-functional PCP1a domain
SIO_010081: EAVgp1
subclass of: SO_0000673
so part of: EAVgp1
location: 225..1004
location: region:225-1004:1
so has part: feature:225-1004:1:exon

NP_705583.1
type: Protein
SIO_000068: ncbiprotein

position:1004:1
position: 1004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:225-1004:1:exon

EAVgp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 11047
gene: 1ab
locus tag: EAVgp1
product: cysteine proteinase 2
experiment: experimental evidence, no additional details recorded
note: nsp2 (CP2)
SIO_010081: EAVgp1
subclass of: SO_0000673
so part of: EAVgp1
location: 1005..2717
location: region:1005-2717:1
so has part: feature:1005-2717:1:exon

NP_705584.1
type: Protein
SIO_000068: ncbiprotein

position:1005:1
position: 1005
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2717:1
position: 2717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1005-2717:1:exon

EAVgp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 11047
gene: 1ab
locus tag: EAVgp1
product: hydrophobic domain
note: nsp3 (HD)
SIO_010081: EAVgp1
subclass of: SO_0000673
so part of: EAVgp1
location: 2718..3416
location: region:2718-3416:1
so has part: feature:2718-3416:1:exon

NP_705585.1
type: Protein
SIO_000068: ncbiprotein

position:2718:1
position: 2718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3416:1
position: 3416
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2718-3416:1:exon

EAVgp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 11047
gene: 1ab
locus tag: EAVgp1
product: 3C-like serine proteinase
experiment: experimental evidence, no additional details recorded
note: nsp4 (3CLSP)
SIO_010081: EAVgp1
subclass of: SO_0000673
so part of: EAVgp1
location: 3417..4028
location: region:3417-4028:1
so has part: feature:3417-4028:1:exon

NP_705586.1
type: Protein
SIO_000068: ncbiprotein

position:3417:1
position: 3417
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4028:1
position: 4028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3417-4028:1:exon

EAVgp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 11047
gene: 1ab
locus tag: EAVgp1
product: hydrophobic domain
experiment: experimental evidence, no additional details recorded
note: nsp5 (HD)
SIO_010081: EAVgp1
subclass of: SO_0000673
so part of: EAVgp1
location: 4029..4514
location: region:4029-4514:1
so has part: feature:4029-4514:1:exon

NP_705587.1
type: Protein
SIO_000068: ncbiprotein

position:4029:1
position: 4029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4514:1
position: 4514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4029-4514:1:exon

EAVgp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 11047
gene: 1ab
locus tag: EAVgp1
product: nsp6
experiment: experimental evidence, no additional details recorded
SIO_010081: EAVgp1
subclass of: SO_0000673
so part of: EAVgp1
location: 4515..4580
location: region:4515-4580:1
so has part: feature:4515-4580:1:exon

NP_705588.1
type: Protein
SIO_000068: ncbiprotein

position:4515:1
position: 4515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4580:1
position: 4580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4515-4580:1:exon

EAVgp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 11047
gene: 1ab
locus tag: EAVgp1
product: nsp7
experiment: experimental evidence, no additional details recorded
SIO_010081: EAVgp1
subclass of: SO_0000673
so part of: EAVgp1
location: 4581..5255
location: region:4581-5255:1
so has part: feature:4581-5255:1:exon

NP_705589.1
type: Protein
SIO_000068: ncbiprotein

position:4581:1
position: 4581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5255:1
position: 5255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4581-5255:1:exon

EAVgp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 11047
gene: 1ab
locus tag: EAVgp1
product: RNA-dependent RNA polymerase
experiment: experimental evidence, no additional details recorded
note: nsp9
SIO_010081: EAVgp1
subclass of: SO_0000673
so part of: EAVgp1
location: join(5256..5405,5405..7333)
location: region:5256-7333:1
so has part: feature:5256-5405:1:exon
so has part: feature:5405-7333:1:exon

NP_705590.1
type: Protein
SIO_000068: ncbiprotein

position:5256:1
position: 5256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7333:1
position: 7333
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5256-5405:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5405-7333:1:exon

EAVgp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 11047
gene: 1ab
locus tag: EAVgp1
product: nsp8
exception: alternative processing
SIO_010081: EAVgp1
subclass of: SO_0000673
so part of: EAVgp1
location: 5256..5405
location: region:5256-5405:1
so has part: feature:5256-5405:1:exon

NP_705594.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5256-5405:1:exon

EAVgp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 11047
gene: 1ab
locus tag: EAVgp1
product: metal-binding and NTPase/helicase domains
experiment: experimental evidence, no additional details recorded
note: nsp10 (MB, NTPase/HEL)
SIO_010081: EAVgp1
subclass of: SO_0000673
so part of: EAVgp1
location: 7334..8734
location: region:7334-8734:1
so has part: feature:7334-8734:1:exon

NP_705591.1
type: Protein
SIO_000068: ncbiprotein

position:7334:1
position: 7334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8734:1
position: 8734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7334-8734:1:exon

EAVgp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 11047
gene: 1ab
locus tag: EAVgp1
product: nsp11
experiment: experimental evidence, no additional details recorded
SIO_010081: EAVgp1
subclass of: SO_0000673
so part of: EAVgp1
location: 8735..9391
location: region:8735-9391:1
so has part: feature:8735-9391:1:exon

NP_705592.1
type: Protein
SIO_000068: ncbiprotein

position:8735:1
position: 8735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9391:1
position: 9391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8735-9391:1:exon

EAVgp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 11047
gene: 1ab
locus tag: EAVgp1
product: nsp12
experiment: experimental evidence, no additional details recorded
SIO_010081: EAVgp1
subclass of: SO_0000673
so part of: EAVgp1
location: 9392..9745
location: region:9392-9745:1
so has part: feature:9392-9745:1:exon

NP_705593.1
type: Protein
SIO_000068: ncbiprotein

position:9392:1
position: 9392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9745:1
position: 9745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9392-9745:1:exon

EAVgp1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 11047
gene: 1ab
locus tag: EAVgp1
note: ORF1a
codon start: 1
product: replicase ORF1a polyprotein
translation: MATFSATGFGGSFVRDWSLDLPDACEHGAGLCCEVDGSTLCAECFRGCEGMEQCPGLFMGLLKLASPVPVGHKFLIGWYRAAKVTGRYNFLELLQHPAFAQLRVVDARLAIEEASVFISTDHASAKRFPGARFALTPVYANAWVVSPAANSLIVTTDQEQDGFCWLKLLPPDRREAGLRLYYNHYREQRTGWLSKTGLRLWLGDLGLGINASSGGLKFHIMRGSPQRAWHITTRSCKLKSYYVCDISEADWSCLPAGNYGGYNPPGDGACGYRCLAFMNGATVVSAGCSSDLWCDDELAYRVFQLSPTFTVTIPGGRVCPNAKYAMICDKQHWRVKRAKGVGLCLDESCFRGICNCQRMSGPPPAPVSAAVLDHILEAATFGNVRVVTPEGQPRPVPAPRVRPSANSSGDVKDPAPVPPVPKPRTKLATPNPTQAPIPAPRTRLQGASTQEPLASAGVASDSAPKWRVAKTVYSSAERFRTELVQRARSVGDVLVQALPLKTPAVQRYTMTLKMMRSRFSWHCDVWYPLAVIACLLPIWPSLALLLSFAIGLIPSVGNNVVLTALLVSSANYVASMDHQCEGAACLALLEEEHYYRAVRWRPITGALSLVLNLLGQVGYVARSTFDAAYVPCTVFDLCSFAILYLCRNRCWRCFGRCVRVGPATHVLGSTGQRVSKLALIDLCDHFSKPTIDVVGMATGWSGCYTGTAAMERQCASTVDPHSFDQKKAGATVYLTPPVNSGSALQCLNVMWKRPIGSTVLGEQTGAVVTAVKSISFSPPCCVSTTLPTRPGVTVVDHALYNRLTASGVDPALLRVGQGDFLKLNPGFRLIGGWIYGICYFVLVVVSTFTCLPIKCGIGTRDPFCRRVFSVPVTKTQEHCHAGMCASAEGISLDSLGLTQLQSYWIAAVTSGLVILLVCHRLAISALDLLTLASPLVLLVFPWASVGLLLACSLAGAAVKIQLLATLFVNLFFPQATLVTMGYWACVAALAVYSLMGLRVKVNVPMCVTPAHFLLLARSAGQSREQMLRVSAAAPTNSLLGVARDCYVTGTTRLYIPKEGGMVFEGLFRSPKARGNVGFVAGSSYGTGSVWTRNNEVVVLTASHVVGRANMATLKIGDAMLTLTFKKNGDFAEAVTTQSELPGNWPQLHFAQPTTGPASWCTATGDEEGLLSGEVCLAWTTSGDSGSAVVQGDAVVGVHTGSNTSGVAYVTTPSGKLLGADTVTLSSLSKHFTGPLTSIPKDIPDNIIADVDAVPRSLAMLIDGLSNRESSLSGPQLLLIACFMWSYLNQPAYLPYVLGFFAANFFLPKSVGRPVVTGLLWLCCLFTPLSMRLCLFHLVCATVTGNVISLWFYITAAGTSYLSEMWFGGYPTMLFVPRFLVYQFPGWAIGTVLAVCSITMLAAALGHTLLLDVFSASGRFDRTFMMKYFLEGGVKESVTASVTRAYGKPITQESLTATLAALTDDDFQFLSDVLDCRAVRSAMNLRAALTSFQVAQYRNILNASLQVDRDAARSRRLMAKLADFAVEQEVTAGDRVVVIDGLDRMAHFKDDLVLVPLTTKVVGGSRCTICDVVKEEANDTPVKPMPSRRRRKGLPKGAQLEWDRHQEEKRNAGDDDFAVSNDYVKRVPKYWDPSDTRGTTVKIAGTTYQKVVDYSGNVHYVEHQEDLLDYVLGKGSYEGLDQDKVLDLTNMLKVDPTELSSKDKAKARQLAHLLLDLANPVEAVNQLN
SIO_010081: EAVgp1
subclass of: SO_0000673
so part of: EAVgp1
location: 225..5408
location: region:225-5408:1
so has part: feature:225-5408:1:exon

NP_127507.1
type: Protein
SIO_000068: ncbiprotein

position:5408:1
position: 5408
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:225-5408:1:exon

EAVgp1
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 11047
gene: 1ab
locus tag: EAVgp1
note: ribosomal frameshift slippery sequence
SIO_010081: EAVgp1
subclass of: SO_0000673
so part of: EAVgp1
location: 5399..5405
location: region:5399-5405:1
so has part: feature:5399-5405:1:exon

position:5399:1
position: 5399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5399-5405:1:exon

EAVgp1
type: Sequence Tagged Site
subclass of: SO_0000331
RO_0002162: 11047
gene: 1ab
locus tag: EAVgp1
standard name: ha2435
SIO_010081: EAVgp1
subclass of: SO_0000673
so part of: EAVgp1
location: 6887..7760
location: region:6887-7760:1
so has part: feature:6887-7760:1:exon

515546
type: UniSTS
SIO_000068: unists

position:6887:1
position: 6887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7760:1
position: 7760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6887-7760:1:exon

EAVgp2
type: Gene
subclass of: SO_0000704
RO_0002162: 11047
gene: E
locus tag: EAVgp2
so part of: sequence
location: 9751..9954
location: region:9751-9954:1
so has part: feature:9751-9954:1:exon
subclass of: SO_0000010

921345
type: Gene
SIO_000068: ncbigene

position:9954:1
position: 9954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9751-9954:1:exon

EAVgp2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 11047
gene: E
locus tag: EAVgp2
note: ORF2a
codon start: 1
product: envelope (E) protein
translation: MGLVWSLISNSIQTIIADFAISVIDAALFFLMLLALAVVTVFLFWLIVAIGRSLVARCSRGARYRPV
SIO_010081: EAVgp2
subclass of: SO_0000673
so part of: EAVgp2
location: 9751..9954
location: region:9751-9954:1
so has part: feature:9751-9954:1:exon

NP_127508.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9751-9954:1:exon

EAVgp3
type: Gene
subclass of: SO_0000704
RO_0002162: 11047
gene: gp2b
locus tag: EAVgp3
so part of: sequence
location: 9824..10507
location: region:9824-10507:1
so has part: feature:9824-10507:1:exon
subclass of: SO_0000010

921344
type: Gene
SIO_000068: ncbigene

position:9824:1
position: 9824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10507:1
position: 10507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9824-10507:1:exon

EAVgp3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 11047
gene: gp2b
locus tag: EAVgp3
note: ORF2b
codon start: 1
product: glycoprotein 2b (GP2b)
translation: MQRFSFSCYLHWLLLLCFFSGSLLPSAAAWWRGVHEVRVTDLFKDLQCDNLRAKDAFPSLGYALSIGQSRLSYMLQDWLLAAHRKEVMPSNIMPMPGLTPDCFDHLESSSYAPFINAYRQAILSQYPQELQLEAINCKLLAVVAPALYHNYHLANLTGPATWVVPTVGQLHYYASSSIFASSVEVLAAIILLFACIPLVTRVYISFTRLMSPSRRTSSGTLPRRKIL
SIO_010081: EAVgp3
subclass of: SO_0000673
so part of: EAVgp3
location: 9824..10507
location: region:9824-10507:1
so has part: feature:9824-10507:1:exon

NP_065656.1
type: Protein
SIO_000068: ncbiprotein

P28992
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:9824-10507:1:exon

EAVgp4
type: Gene
subclass of: SO_0000704
RO_0002162: 11047
gene: gp3
locus tag: EAVgp4
so part of: sequence
location: 10306..10797
location: region:10306-10797:1
so has part: feature:10306-10797:1:exon
subclass of: SO_0000010

921346
type: Gene
SIO_000068: ncbigene

position:10306:1
position: 10306
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10797:1
position: 10797
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10306-10797:1:exon

EAVgp4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 11047
gene: gp3
locus tag: EAVgp4
note: ORF3
codon start: 1
product: glycoprotein 3 (GP3)
translation: MGRAYSGPVALLCFFLYFCFICGSVGSNNTTICMHTTSDTSVHLFYAANVTFPSHFQRHFAAAQDFVVHTGYEYAGVTMLVHLFANLVLTFPSLVNCSRPVNVFANASCVQVVCSHTNSTTGLGQLSFSFVDEDLRLHIRPTLICWFALLLVHFLPMPRCRGS
SIO_010081: EAVgp4
subclass of: SO_0000673
so part of: EAVgp4
location: 10306..10797
location: region:10306-10797:1
so has part: feature:10306-10797:1:exon

NP_065657.1
type: Protein
SIO_000068: ncbiprotein

P28993
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:10306-10797:1:exon

EAVgp5
type: Gene
subclass of: SO_0000704
RO_0002162: 11047
gene: gp4
locus tag: EAVgp5
so part of: sequence
location: 10700..11158
location: region:10700-11158:1
so has part: feature:10700-11158:1:exon
subclass of: SO_0000010

921343
type: Gene
SIO_000068: ncbigene

position:10700:1
position: 10700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11158:1
position: 11158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10700-11158:1:exon

EAVgp5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 11047
gene: gp4
locus tag: EAVgp5
note: ORF4
codon start: 1
product: glycoprotein 4 (GP4)
translation: MKIYGCISGLLLFVGLPCCWCTFYPCHAAEARNFTYISHGLGHVHGHEGCRNFINVTHSAFLYLNPTTPTAPAITHCLLLVLAAKMEHPNATIWLQLQPFGYHVAGDVIVNLEEDKRHPYFKLLRAPALPLGFVAIVYVLLRLVRWAQRCYL
SIO_010081: EAVgp5
subclass of: SO_0000673
so part of: EAVgp5
location: 10700..11158
location: region:10700-11158:1
so has part: feature:10700-11158:1:exon

NP_065658.1
type: Protein
SIO_000068: ncbiprotein

P28994
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:10700-11158:1:exon

EAVgp9
type: Gene
subclass of: SO_0000704
RO_0002162: 11047
gene: orf5a
locus tag: EAVgp9
so part of: sequence
location: 11112..11291
location: region:11112-11291:1
so has part: feature:11112-11291:1:exon
subclass of: SO_0000010

12979089
type: Gene
SIO_000068: ncbigene

position:11112:1
position: 11112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11291:1
position: 11291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11112-11291:1:exon

EAVgp9
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 11047
gene: orf5a
locus tag: EAVgp9
experiment: experimental evidence, no additional details recorded
note: possibly it is the eighth structural protein of the arterivirus particle; ORF5a protein has been added by NCBI Staff with the kind help of Dr. David Karlin(Department of Zoology, University of Oxford, UK) and Dr. Andrew Firth (Department of Pathology, University of Cambridge, UK)
codon start: 1
product: ORF5a protein
translation: MFFYDWYVGLNDVIYDCIAILALGCAITCLLLILHRSALHRLHLVYADGSRRYCQFAAI
SIO_010081: EAVgp9
subclass of: SO_0000673
so part of: EAVgp9
location: 11112..11291
location: region:11112-11291:1
so has part: feature:11112-11291:1:exon

YP_006390077.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11112-11291:1:exon

EAVgp6
type: Gene
subclass of: SO_0000704
RO_0002162: 11047
gene: gp5
locus tag: EAVgp6
so part of: sequence
location: 11146..11913
location: region:11146-11913:1
so has part: feature:11146-11913:1:exon
subclass of: SO_0000010

921342
type: Gene
SIO_000068: ncbigene

position:11146:1
position: 11146
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11913:1
position: 11913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11146-11913:1:exon

EAVgp6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 11047
gene: gp5
locus tag: EAVgp6
note: ORF5
codon start: 1
product: glycoprotein 5 (GP5)
translation: MLSMIVLLFLLWGAPSHAYFSYYTAQRFTDFTLCMLTDRGVIANLLRYDEHTALYNCSASKTCWYCTFLDEQIITFGTDCDDTYAVPVAEVLEQAHGPYSALFDDMPPFIYYGREFGIVVLDVFMFYPVLVLFFLSVLPYATLILEMCVSILFIIYGIYSGAYLAMGIFAATLAIHSIVVLRQLLWLCLAWRYRCTLHASFISAEGKVYPVDPGLPVAAVGNRLLVPGRPTIDYAVAYGSKVNLVRLGAAEVWEP
SIO_010081: EAVgp6
subclass of: SO_0000673
so part of: EAVgp6
location: 11146..11913
location: region:11146-11913:1
so has part: feature:11146-11913:1:exon

NP_065659.1
type: Protein
SIO_000068: ncbiprotein

P28995
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:11146-11913:1:exon

EAVgp7
type: Gene
subclass of: SO_0000704
RO_0002162: 11047
locus tag: EAVgp7
so part of: sequence
location: 11901..12389
location: region:11901-12389:1
so has part: feature:11901-12389:1:exon
subclass of: SO_0000010

921340
type: Gene
SIO_000068: ncbigene

position:11901:1
position: 11901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12389:1
position: 12389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11901-12389:1:exon

EAVgp7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 11047
locus tag: EAVgp7
note: ORF6
codon start: 1
product: hypothetical protein
translation: MGAIDSFCGDGILGEYLDYFILSVPLLLLLTRYVASGLVYVLTALFYSFVLAAYIWFVIVGRAFSTAYAFVLLAAFLLLVMRMIVGMMPRLRSIFNHRQLVVADFVDTPSGPVPIPRSTTQVVVRGNGYTAVGNKLVDGVKTITSAGRLFSKRTAATAYKLQ
SIO_010081: EAVgp7
subclass of: SO_0000673
so part of: EAVgp7
location: 11901..12389
location: region:11901-12389:1
so has part: feature:11901-12389:1:exon

NP_065660.1
type: Protein
SIO_000068: ncbiprotein

P28991
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:11901-12389:1:exon

EAVgp8
type: Gene
subclass of: SO_0000704
RO_0002162: 11047
locus tag: EAVgp8
so part of: sequence
location: 12313..12645
location: region:12313-12645:1
so has part: feature:12313-12645:1:exon
subclass of: SO_0000010

921341
type: Gene
SIO_000068: ncbigene

position:12313:1
position: 12313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12645:1
position: 12645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12313-12645:1:exon

EAVgp8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 11047
locus tag: EAVgp8
note: ORF7
codon start: 1
product: hypothetical protein
translation: MASRRSRPQAASFRNGRRRQPTSYNDLLRMFGQMRVRKPPAQPTQAIIAEPGDLRHDLNQQERATLSSNVQRFFMIGHGSLTADAGGLTYTVSWVPTKQIQRKVAPPAGP
SIO_010081: EAVgp8
subclass of: SO_0000673
so part of: EAVgp8
location: 12313..12645
location: region:12313-12645:1
so has part: feature:12313-12645:1:exon

NP_065661.1
type: Protein
SIO_000068: ncbiprotein

P19810
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:12313-12645:1:exon

polyA_site
type: PolyA Site
subclass of: SO_0000553
RO_0002162: 11047
so part of: sequence
location: 12704
location: region:12704-12704:1
so has part: feature:12704-12704:1:region

urn:…
SIO_000300: 1
SIO_000628: feature:12704-12704:1:region