Borrelia turcica IST7 plasmid lp27, complete sequence.
Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia.
Genome-wide analysis of Borrelia turcica and 'Candidatus Borrelia tachyglossi' shows relapsing fever-like genomes with unique genomic links to Lyme disease Borrelia
Submitted (12-APR-2018) German National Reference Centre for Borrelia, Bavarian Health and Food Safety Authority, Veterinarstrasse 2, Oberschleissheim 85764, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP028891.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. v2.3.0; other v. 9.5.3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 48.0x\nSequencing Technology :: PacBio; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/23/2023 23:20:26\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,277\nCDSs (total) :: 1,240\nGenes (coding) :: 1,232\nCDSs (with protein) :: 1,232\nGenes (RNA) :: 37\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 31\nncRNAs :: 3\nPseudo Genes (total) :: 8\nCDSs (without protein) :: 8\nPseudo Genes (ambiguous residues) :: 0 of 8\nPseudo Genes (frameshifted) :: 5 of 8\nPseudo Genes (incomplete) :: 3 of 8\nPseudo Genes (internal stop) :: 2 of 8\nPseudo Genes (multiple problems) :: 2 of 8\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_014683202.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF017132.2
BlyB family putative holin accessory protein
COORDINATES: similar to AA sequence:RefSeq:WP_010257832.1
COORDINATES: similar to AA sequence:RefSeq:WP_011600659.1
COORDINATES: similar to AA sequence:RefSeq:WP_002658697.1
COORDINATES: similar to AA sequence:RefSeq:WP_014486178.1
COORDINATES: similar to AA sequence:RefSeq:WP_010883841.1
DUF276 is restricted to Borreliella and related spirochetes; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014486242.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539760.1
COORDINATES: similar to AA sequence:RefSeq:WP_002658570.1
COORDINATES: similar to AA sequence:RefSeq:WP_014017454.1
COORDINATES: similar to AA sequence:RefSeq:WP_010883745.1
COORDINATES: similar to AA sequence:RefSeq:WP_014017452.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683066.1
COORDINATES: similar to AA sequence:RefSeq:WP_012665023.1
COORDINATES: similar to AA sequence:RefSeq:WP_014017491.1
COORDINATES: protein motif:HMM:NF017382.2
COORDINATES: similar to AA sequence:RefSeq:WP_014683240.1
COORDINATES: protein motif:HMM:NF019051.2
COORDINATES: protein motif:HMM:NF024429.2
COORDINATES: similar to AA sequence:RefSeq:WP_012539237.1
COORDINATES: similar to AA sequence:RefSeq:WP_012593056.1
COORDINATES: similar to AA sequence:RefSeq:WP_002658639.1
COORDINATES: similar to AA sequence:RefSeq:WP_014540879.1
COORDINATES: protein motif:HMM:NF018761.2
COORDINATES: similar to AA sequence:RefSeq:WP_012539811.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015633307.1
COORDINATES: similar to AA sequence:RefSeq:WP_002658630.1
PBSX family phage terminase large subunit
COORDINATES: protein motif:HMM:NF016524.2
COORDINATES: similar to AA sequence:RefSeq:WP_012539806.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016050208.1
COORDINATES: similar to AA sequence:RefSeq:WP_012592996.1
COORDINATES: protein motif:HMM:NF021128.2