Borrelia turcica IST7 plasmid lp129, complete sequence.
Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia.
Genome-wide analysis of Borrelia turcica and 'Candidatus Borrelia tachyglossi' shows relapsing fever-like genomes with unique genomic links to Lyme disease Borrelia
Submitted (12-APR-2018) German National Reference Centre for Borrelia, Bavarian Health and Food Safety Authority, Veterinarstrasse 2, Oberschleissheim 85764, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP028885.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. v2.3.0; other v. 9.5.3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 48.0x\nSequencing Technology :: PacBio; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/23/2023 23:20:26\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,277\nCDSs (total) :: 1,240\nGenes (coding) :: 1,232\nCDSs (with protein) :: 1,232\nGenes (RNA) :: 37\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 31\nncRNAs :: 3\nPseudo Genes (total) :: 8\nCDSs (without protein) :: 8\nPseudo Genes (ambiguous residues) :: 0 of 8\nPseudo Genes (frameshifted) :: 5 of 8\nPseudo Genes (incomplete) :: 3 of 8\nPseudo Genes (internal stop) :: 2 of 8\nPseudo Genes (multiple problems) :: 2 of 8\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_010257147.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014683208.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539331.1
DUF276 is restricted to Borreliella and related spirochetes; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014683206.1
COORDINATES: protein motif:HMM:NF016941.2
COORDINATES: similar to AA sequence:RefSeq:WP_014683204.1
COORDINATES: protein motif:HMM:NF017132.2
BlyB family putative holin accessory protein
COORDINATES: similar to AA sequence:RefSeq:WP_014683202.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539327.1
COORDINATES: similar to AA sequence:RefSeq:WP_010258127.1
COORDINATES: similar to AA sequence:RefSeq:WP_014696734.1
COORDINATES: similar to AA sequence:RefSeq:WP_011703782.1
chromosome replication/partitioning protein
COORDINATES: similar to AA sequence:RefSeq:WP_012539444.1
COORDINATES: similar to AA sequence:RefSeq:WP_014017644.1
PBSX family phage terminase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_010890372.1
COORDINATES: similar to AA sequence:RefSeq:WP_012686535.1
COORDINATES: protein motif:HMM:NF015275.2
COORDINATES: protein motif:HMM:NF028354.2
COORDINATES: similar to AA sequence:RefSeq:WP_015633326.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539731.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633338.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539431.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683178.1
COORDINATES: similar to AA sequence:RefSeq:WP_010257711.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539308.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539307.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539306.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683173.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890388.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683171.1
COORDINATES: similar to AA sequence:RefSeq:WP_010257732.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539422.1
COORDINATES: similar to AA sequence:RefSeq:WP_010257109.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683167.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683166.1
COORDINATES: similar to AA sequence:RefSeq:WP_014683162.1
GO:0050797 - thymidylate synthase (FAD) activity [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014683161.1
GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IEA]
class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI
COORDINATES: similar to AA sequence:RefSeq:WP_001215827.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
class 1b ribonucleoside-diphosphate reductase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_012539290.1
GO:0005971 - ribonucleoside-diphosphate reductase complex [Evidence IEA]
GO:0030145 - manganese ion binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
class 1b ribonucleoside-diphosphate reductase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_014094556.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008798829.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003922 - GMP synthase (glutamine-hydrolyzing) activity [Evidence IEA]; GO:0016462 - pyrophosphatase activity [Evidence IEA]
GO:0006177 - GMP biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010256195.1
COORDINATES: similar to AA sequence:RefSeq:WP_011193710.1