Suncus etruscus isolate mSunEtr1 chromosome Y, mSunEtr1.pri.cur, whole genome shotgun sequence.
type: Entry
definition: Suncus etruscus isolate mSunEtr1 chromosome Y, mSunEtr1.pri.cur, whole genome shotgun sequence.
sequence version: NC_064869.1
sequence date: 2023-02-27
sequence: sequence
division: CON
label: NC_064869.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA862492
dblink: SAMN28420931
keyword: WGS
keyword: RefSeq
source: Suncus etruscus (white-toothed pygmy shrew)
organism: Suncus etruscus
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Soricidae; Crocidurinae; Suncus.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM043993.1.\nAssembly name: mSunEtr1.pri.cur\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2022/07/06. The original whole-genome shotgun project has the\naccession JAMYDX000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 25-NOV-2021\nAssembly Method :: FALCON v. 2.0.2; FALCON-Unzip v. 8.0.1;\n purge_dups v. 1.0.0; scaff10x v. 2.0.3;\n bionano solve v. 3.4.0; salsa v. 2.2;\n gcpp v. 2.0.2; merfin v. 1.0; freebayes\n v. 1.3.1\nAssembly Name :: mSunEtr1.pri.cur\nDiploid :: Principal Haplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 142.65x\nSequencing Technology :: PacBio Sequel CLR; 10X linked reads;\n Bionano DLS; Arima Hi-C v1\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Updated annotation\nAnnotation Name :: GCF_024139225.1-RS_2023_02\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 02/26/2023\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 1388264
topology: linear
so has quality: SO_0000987
location: 1..1388264
location: region:1-1388264:1
RO_0002162: 109475

NC_064869
type: RefSeq
SIO_000068: refseq

PRJNA862492
type: BioProject
SIO_000068: bioproject

SAMN28420931
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1388264:1
position: 1388264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-1388264:1:source
so part of: sequence
organism: Suncus etruscus
mol type: genomic DNA
isolate: mSunEtr1
chromosome: Y
sex: male
tissue type: lung fibroblast cultured cells
dev stage: adult
country: USA: Madison, Wisconsin
lat lon: 43.072810 N 89.407550 W
collected by: Susanne Meyer, Jessica Antosiewicz-Bourget

109475
type: Taxonomy
SIO_000068: taxonomy

LOC126000410
type: Gene
subclass of: SO_0000704
RO_0002162: 109475
gene: LOC126000410
note: heterogeneous nuclear ribonucleoprotein K-like; Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(99058..134683)
location: region:99058-134683:-1
so has part: feature:99058-134683:-1:exon

126000410
type: Gene
SIO_000068: ncbigene

position:99058:-1
position: 99058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:134683:-1
position: 134683
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:99058-134683:-1:exon

LOC126000410
type: Exon
subclass of: SO_0000147
RO_0002162: 109475
gene: LOC126000410
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
pseudo: true
SIO_010081: LOC126000410
subclass of: SO_0000673
so part of: LOC126000410
location: complement(99058..99657)
location: region:99058-99657:-1
so has part: feature:99058-99657:-1:exon

position:99657:-1
position: 99657
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:99058-99657:-1:exon

LOC126000410
type: Exon
subclass of: SO_0000147
RO_0002162: 109475
gene: LOC126000410
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
pseudo: true
SIO_010081: LOC126000410
subclass of: SO_0000673
so part of: LOC126000410
location: complement(99840..99849)
location: region:99840-99849:-1
so has part: feature:99840-99849:-1:exon

position:99840:-1
position: 99840
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:99849:-1
position: 99849
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:99840-99849:-1:exon

LOC126000410
type: Exon
subclass of: SO_0000147
RO_0002162: 109475
gene: LOC126000410
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
pseudo: true
SIO_010081: LOC126000410
subclass of: SO_0000673
so part of: LOC126000410
location: complement(99948..100523)
location: region:99948-100523:-1
so has part: feature:99948-100523:-1:exon

position:99948:-1
position: 99948
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:100523:-1
position: 100523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:99948-100523:-1:exon

LOC126000410
type: Exon
subclass of: SO_0000147
RO_0002162: 109475
gene: LOC126000410
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
pseudo: true
SIO_010081: LOC126000410
subclass of: SO_0000673
so part of: LOC126000410
location: complement(103269..103411)
location: region:103269-103411:-1
so has part: feature:103269-103411:-1:exon

position:103269:-1
position: 103269
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:103411:-1
position: 103411
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:103269-103411:-1:exon

LOC126000410
type: Exon
subclass of: SO_0000147
RO_0002162: 109475
gene: LOC126000410
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
pseudo: true
SIO_010081: LOC126000410
subclass of: SO_0000673
so part of: LOC126000410
location: complement(134505..134683)
location: region:134505-134683:-1
so has part: feature:134505-134683:-1:exon

position:134505:-1
position: 134505
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:134505-134683:-1:exon

LOC126000415
type: Gene
subclass of: SO_0000704
RO_0002162: 109475
gene: LOC126000415
note: zinc finger X-chromosomal protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 144236..178277
location: region:144236-178277:1
so has part: feature:144236-178277:1:exon
subclass of: SO_0000010

126000415
type: Gene
SIO_000068: ncbigene

position:144236:1
position: 144236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:178277:1
position: 178277
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:144236-178277:1:exon

LOC126000415
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 109475
gene: LOC126000415
product: zinc finger X-chromosomal protein-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 Proteins
transcript id: XM_049767716.1
SIO_010081: LOC126000415
subclass of: SO_0000673
so part of: LOC126000415
location: join(144236..144314,161641..162189,168562..168711,170850..170990,171866..172018,176053..176193,177094..178277)
location: region:144236-178277:1
so has part: feature:144236-144314:1:exon
so has part: feature:161641-162189:1:exon
so has part: feature:168562-168711:1:exon
so has part: feature:170850-170990:1:exon
so has part: feature:171866-172018:1:exon
so has part: feature:176053-176193:1:exon
so has part: feature:177094-178277:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:144236-144314:1:exon

position:144314:1
position: 144314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:161641-162189:1:exon

position:161641:1
position: 161641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:162189:1
position: 162189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:168562-168711:1:exon

position:168562:1
position: 168562
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:168711:1
position: 168711
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:170850-170990:1:exon

position:170850:1
position: 170850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:170990:1
position: 170990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:171866-172018:1:exon

position:171866:1
position: 171866
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:172018:1
position: 172018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:176053-176193:1:exon

position:176053:1
position: 176053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:176193:1
position: 176193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:177094-178277:1:exon

position:177094:1
position: 177094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC126000415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109475
gene: LOC126000415
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger X-chromosomal protein-like
translation: MDEDELELQPQEQNSFFDEIGTDAIHMDGDQIVVEVQETVFVSDVVDADITVHNFVPDDPDSVVIQNVIEDVVIEDVQCSDILEEANVSEQVFGSDVTEVSLAHCTVPDDVLASDITLTTVSMPEHVLTSESVHVSDIGHVDHIVHDSVVEAEIITDPLTTDIVSEEDLVADCASEAVIDVSGIPVDHQDDDRENCEDYLMISLDDTGKLEHDVSSGITMEEHPEIDPCKVDGTCPEVIKVYIFKADPGEDDLGGTVDVVENEPKNDHDVELINPNCNIHVPREKMVYMTVNDSQQNDDLNVTEIADEVYMEVIVGEEDASVAATATAVHEQQIEDNEIKTFMPVAWAAAYGNNSDGTENRNGTASALVHTDESPGLSVLTKQKPKKRRRPDSRQYQTTIIIGPDGHPLTVYPCMICEKKFKSRGFLKRHMKNHPEYLTKKKYHCTDCDYTTNKKISLHNHLESHKLTSKAEKAVEYEENGKQFSQAGALFTHKTVHKEKGTKKPHKCKFCEYETVEQGLLNHHLLAVHNKNFPHICVECGKGFRHPSELKKHMRIHTGEKPYQCQYCEYRSADSSNLKTHVKTKHSKEISFKCDICLLTFSDTKEVQQHALIHQESKTYQCLHCDHKSSNSSDLKRHVISVHTKDYPHKCDMCDKGFHRPSELKKHVDAHKGKKLHRCRHCDFKIEDPFVLSRHILSVHTKDLPFGCKKCRKGFRQQNELKKHMKTHGGRKVYQCEYCEYSTTDASGFKRHVISIHTKEYPHRCHHCEKGFRRPSEKNQHIMRHHKEVGLP
SIO_010081: LOC126000415
subclass of: SO_0000673
so part of: LOC126000415
location: join(144254..144314,161641..162189,168562..168711,170850..170990,171866..172018,176053..176193,177094..178277)
location: region:144254-178277:1
so has part: feature:144254-144314:1:exon
so has part: feature:161641-162189:1:exon
so has part: feature:168562-168711:1:exon
so has part: feature:170850-170990:1:exon
so has part: feature:171866-172018:1:exon
so has part: feature:176053-176193:1:exon
so has part: feature:177094-178277:1:exon

XP_049623673.1
type: Protein
SIO_000068: ncbiprotein

position:144254:1
position: 144254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:144254-144314:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:161641-162189:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:168562-168711:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:170850-170990:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:171866-172018:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:176053-176193:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:177094-178277:1:exon

LOC126000431
type: Gene
subclass of: SO_0000704
RO_0002162: 109475
gene: LOC126000431
note: U6 spliceosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 166871..166973
location: region:166871-166973:1
so has part: feature:166871-166973:1:exon
subclass of: SO_0000623

126000431
type: Gene
SIO_000068: ncbigene

position:166871:1
position: 166871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:166973:1
position: 166973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:166871-166973:1:exon

LOC126000431
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 109475
nc RNA class: snRNA
gene: LOC126000431
product: U6 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_007492744.1
SIO_010081: LOC126000431
subclass of: SO_0000673
so part of: LOC126000431
location: 166871..166973
location: region:166871-166973:1
so has part: feature:166871-166973:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:166871-166973:1:exon

LOC126000418
type: Gene
subclass of: SO_0000704
RO_0002162: 109475
gene: LOC126000418
note: uncharacterized LOC126000418; Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
so part of: sequence
location: complement(182381..182500)
location: region:182381-182500:-1
so has part: feature:182381-182500:-1:exon

126000418
type: Gene
SIO_000068: ncbigene

position:182381:-1
position: 182381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:182500:-1
position: 182500
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:182381-182500:-1:exon

LOC126000418
type: Exon
subclass of: SO_0000147
RO_0002162: 109475
gene: LOC126000418
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF00001
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
SIO_010081: LOC126000418
subclass of: SO_0000673
so part of: LOC126000418
location: complement(182381..182500)
location: region:182381-182500:-1
so has part: feature:182381-182500:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:182381-182500:-1:exon

LOC126000422
type: Gene
subclass of: SO_0000704
RO_0002162: 109475
gene: LOC126000422
note: small nucleolar RNA SNORA22; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 301520..301649
location: region:301520-301649:1
so has part: feature:301520-301649:1:exon
subclass of: SO_0000578

126000422
type: Gene
SIO_000068: ncbigene

position:301520:1
position: 301520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:301649:1
position: 301649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:301520-301649:1:exon

LOC126000422
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 109475
nc RNA class: snoRNA
gene: LOC126000422
product: small nucleolar RNA SNORA22
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF00414
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_007492737.1
SIO_010081: LOC126000422
subclass of: SO_0000673
so part of: LOC126000422
location: 301520..301649
location: region:301520-301649:1
so has part: feature:301520-301649:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:301520-301649:1:exon

LOC126000411
type: Gene
subclass of: SO_0000704
RO_0002162: 109475
gene: LOC126000411
note: Bardet-Biedl syndrome 7 protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(310020..320154)
location: region:310020-320154:-1
so has part: feature:310020-320154:-1:exon
subclass of: SO_0000010

126000411
type: Gene
SIO_000068: ncbigene

position:310020:-1
position: 310020
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:320154:-1
position: 320154
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:310020-320154:-1:exon

LOC126000411
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 109475
gene: LOC126000411
product: Bardet-Biedl syndrome 7 protein-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
transcript id: XM_049767711.1
SIO_010081: LOC126000411
subclass of: SO_0000673
so part of: LOC126000411
location: complement(join(310020..310603,310719..312191,320038..320154))
location: region:310020-320154:-1
so has part: feature:320038-320154:-1:exon
so has part: feature:310719-312191:-1:exon
so has part: feature:310020-310603:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:320038-320154:-1:exon

position:320038:-1
position: 320038
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:310719-312191:-1:exon

position:310719:-1
position: 310719
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:312191:-1
position: 312191
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:310020-310603:-1:exon

position:310603:-1
position: 310603
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC126000411
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109475
gene: LOC126000411
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 2 codons; substituted 2 bases at 2 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:complement(311940..311942),aa:OTHER)
transl except: (pos:complement(310198..310200),aa:OTHER)
product: LOW QUALITY PROTEIN: Bardet-Biedl syndrome 7 protein-like
translation: MDPTFLNTVGMNFGRISLSIKGISVIKEAIDPDSMGEIIVGVTSPKTMKLLPAPRKSGTQKVVIGDHDGVILCFGMKKGEAVAVFKTLPGQKIARLELGGVPNTPQEKIFIAAGSEIRGFTKXGKQFLSFETNLTESIKAMHVCGSDLFLSASYIYNHYCDCKDQHYYLSGDKINDVICLPVERLHRIRPVLACQDRVLRVLQGSDVMYEVEVPGPPTVLALHNGNGSDSGENLLFGISDGKLGLIQITTSKPVHKWEIQNEKKRGGILCVDNLDIVGDGVKDLLVGRDDGVVEVYSFDNANEPVLRFFQTLPESVTSIQGGCVGKEGYDKIVVATYSGWVTSLTTEPIHKECGPGEEFKINQEMKSKFSSLRSELEQLQYKVLQEREKYQQSSQSSKARSVAPSFSVNDKFTLNKDDASYSLTLEVQTAIENILIQSDVPIDLFDVDKNSAVVSFSSCDSESSDNFLXATYRCQANTTRLELKIRSIEGQYGTLQAYVTPRIEPKTCQVRQYLIKPLSLHQRTHYIDHDRPMNTLTLTGQFSFAEVYSWVVFCFPEVSEKPPAGECITFYFQNTFLDTQLESTYRKGEGVFKSDNISTISILKDVLSKEATKKKINLNISYVAFDSTSKINEVSVKHTLKLIHLKLEYQLLLAKKVQLIDALKXLQVQEENTNFLIPEYRCILEEADHLQEEYKKQPAHLERLYG
SIO_010081: LOC126000411
subclass of: SO_0000673
so part of: LOC126000411
location: complement(join(310072..310603,310719..312191,320038..320154))
location: region:310072-320154:-1
so has part: feature:320038-320154:-1:exon
so has part: feature:310719-312191:-1:exon
so has part: feature:310072-310603:-1:exon

XP_049623668.1
type: Protein
SIO_000068: ncbiprotein

position:310072:-1
position: 310072
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:320038-320154:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:310719-312191:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:310072-310603:-1:exon

LOC126000429
type: Gene
subclass of: SO_0000704
RO_0002162: 109475
gene: LOC126000429
note: U6 spliceosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 338761..338865
location: region:338761-338865:1
so has part: feature:338761-338865:1:exon
subclass of: SO_0000623

126000429
type: Gene
SIO_000068: ncbigene

position:338761:1
position: 338761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:338865:1
position: 338865
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:338761-338865:1:exon

LOC126000429
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 109475
nc RNA class: snRNA
gene: LOC126000429
product: U6 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_007492742.1
SIO_010081: LOC126000429
subclass of: SO_0000673
so part of: LOC126000429
location: 338761..338865
location: region:338761-338865:1
so has part: feature:338761-338865:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:338761-338865:1:exon

LOC126000430
type: Gene
subclass of: SO_0000704
RO_0002162: 109475
gene: LOC126000430
note: U6 spliceosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 447712..447818
location: region:447712-447818:1
so has part: feature:447712-447818:1:exon
subclass of: SO_0000623

126000430
type: Gene
SIO_000068: ncbigene

position:447712:1
position: 447712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:447818:1
position: 447818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:447712-447818:1:exon

LOC126000430
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 109475
nc RNA class: snRNA
gene: LOC126000430
product: U6 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_007492743.1
SIO_010081: LOC126000430
subclass of: SO_0000673
so part of: LOC126000430
location: 447712..447818
location: region:447712-447818:1
so has part: feature:447712-447818:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:447712-447818:1:exon

LOC126000424
type: Gene
subclass of: SO_0000704
RO_0002162: 109475
gene: LOC126000424
note: uncharacterized LOC126000424; Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
so part of: sequence
location: complement(621967..622083)
location: region:621967-622083:-1
so has part: feature:621967-622083:-1:exon

126000424
type: Gene
SIO_000068: ncbigene

position:621967:-1
position: 621967
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:622083:-1
position: 622083
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:621967-622083:-1:exon

LOC126000424
type: Exon
subclass of: SO_0000147
RO_0002162: 109475
gene: LOC126000424
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF00414
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
SIO_010081: LOC126000424
subclass of: SO_0000673
so part of: LOC126000424
location: complement(621967..622083)
location: region:621967-622083:-1
so has part: feature:621967-622083:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:621967-622083:-1:exon

LOC126000428
type: Gene
subclass of: SO_0000704
RO_0002162: 109475
gene: LOC126000428
note: small nucleolar RNA SNORA51; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 743925..744056
location: region:743925-744056:1
so has part: feature:743925-744056:1:exon
subclass of: SO_0000578

126000428
type: Gene
SIO_000068: ncbigene

position:743925:1
position: 743925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:744056:1
position: 744056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:743925-744056:1:exon

LOC126000428
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 109475
nc RNA class: snoRNA
gene: LOC126000428
product: small nucleolar RNA SNORA51
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF00432
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_007492741.1
SIO_010081: LOC126000428
subclass of: SO_0000673
so part of: LOC126000428
location: 743925..744056
location: region:743925-744056:1
so has part: feature:743925-744056:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:743925-744056:1:exon

SRY
type: Gene
subclass of: SO_0000704
RO_0002162: 109475
gene: SRY
note: sex determining region Y; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 755940..773604
location: region:755940-773604:1
so has part: feature:755940-773604:1:exon
subclass of: SO_0000010

126000412
type: Gene
SIO_000068: ncbigene

position:755940:1
position: 755940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:773604:1
position: 773604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:755940-773604:1:exon

SRY
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 109475
gene: SRY
product: sex determining region Y
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins
transcript id: XM_049767712.1
SIO_010081: SRY
subclass of: SO_0000673
so part of: SRY
location: join(755940..756040,759692..760292,773428..773604)
location: region:755940-773604:1
so has part: feature:755940-756040:1:exon
so has part: feature:759692-760292:1:exon
so has part: feature:773428-773604:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:755940-756040:1:exon

position:756040:1
position: 756040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:759692-760292:1:exon

position:759692:1
position: 759692
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:760292:1
position: 760292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:773428-773604:1:exon

position:773428:1
position: 773428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SRY
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109475
gene: SRY
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sex-determining region Y protein
translation: MWLYMSILEDVVEFWIFPHPQSSLTNHHSLQARQVTEDFFPELKQRSMFPLGKTSSLLWTNNANLNNGYETTRYSRKKKMDHIKRPMNAFMVWSRDQRRKIALQNPQIQNSEISKQLGYQWKMLTDIEKWPFFQEAQRLQAEHREKYPDYKYQPRRKAKRLQKDEKALLSNCSSMLCNQVYMNQKSIFTYREDYSYIAQPQMEKQLNISKGLTISSSLLQQELPSFWTSLQVDQDIKSTWCKLVSDWYYELLWEFGSWCCAGICDYPTAWDLHFGAGWSLFSHMESKSMETT
SIO_010081: SRY
subclass of: SO_0000673
so part of: SRY
location: join(755940..756040,759692..760292,773428..773604)
location: region:755940-773604:1
so has part: feature:755940-756040:1:exon
so has part: feature:759692-760292:1:exon
so has part: feature:773428-773604:1:exon

XP_049623669.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:755940-756040:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:759692-760292:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:773428-773604:1:exon

LOC126000423
type: Gene
subclass of: SO_0000704
RO_0002162: 109475
gene: LOC126000423
note: small nucleolar RNA SNORA22; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(785518..785647)
location: region:785518-785647:-1
so has part: feature:785518-785647:-1:exon
subclass of: SO_0000578

126000423
type: Gene
SIO_000068: ncbigene

position:785518:-1
position: 785518
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:785647:-1
position: 785647
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:785518-785647:-1:exon

LOC126000423
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 109475
nc RNA class: snoRNA
gene: LOC126000423
product: small nucleolar RNA SNORA22
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF00414
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_007492738.1
SIO_010081: LOC126000423
subclass of: SO_0000673
so part of: LOC126000423
location: complement(785518..785647)
location: region:785518-785647:-1
so has part: feature:785518-785647:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:785518-785647:-1:exon

LOC126000420
type: Gene
subclass of: SO_0000704
RO_0002162: 109475
gene: LOC126000420
note: uncharacterized LOC126000420; Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
so part of: sequence
location: complement(835908..836001)
location: region:835908-836001:-1
so has part: feature:835908-836001:-1:exon

126000420
type: Gene
SIO_000068: ncbigene

position:835908:-1
position: 835908
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:836001:-1
position: 836001
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:835908-836001:-1:exon

LOC126000420
type: Exon
subclass of: SO_0000147
RO_0002162: 109475
gene: LOC126000420
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
SIO_010081: LOC126000420
subclass of: SO_0000673
so part of: LOC126000420
location: complement(835908..836001)
location: region:835908-836001:-1
so has part: feature:835908-836001:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:835908-836001:-1:exon

LOC126000413
type: Gene
subclass of: SO_0000704
RO_0002162: 109475
gene: LOC126000413
note: uncharacterized LOC126000413; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1050001..1055362)
location: region:1050001-1055362:-1
so has part: feature:1050001-1055362:-1:exon
subclass of: SO_0000010

126000413
type: Gene
SIO_000068: ncbigene

position:1050001:-1
position: 1050001
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1055362:-1
position: 1055362
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1050001-1055362:-1:exon

LOC126000413
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 109475
gene: LOC126000413
product: uncharacterized LOC126000413
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 3 codons; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
transcript id: XM_049767714.1
SIO_010081: LOC126000413
subclass of: SO_0000673
so part of: LOC126000413
location: complement(1050001..1055362)
location: region:1050001-1055362:-1
so has part: feature:1050001-1055362:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1050001-1055362:-1:exon

LOC126000413
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109475
gene: LOC126000413
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 3 codons; deleted 2 bases in 1 codon; substituted 2 bases at 2 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:complement(1053543..1053545),aa:OTHER)
transl except: (pos:complement(1050202..1050204),aa:OTHER)
product: LOW QUALITY PROTEIN: uncharacterized protein LOC126000413
translation: MGQSVTTPLSLTLDHWPEVRTRASNLSLPVKKSQWQTFCSAEWPTFGVGWPPAGTFCLDIIKRVKSFVFQPGEHGHPDQEAYIIVWQDLSENPPSWVQPFLPPRPLEPGPNSLSPLSVLPAKLGGEKKEKNPSQPSAPVLDQLDPLTPKPVLSDTQDLLLFDAPPPPYPPPPQQLQRQAAPVPEAAQAAPLSPPQEPDSSTGQSGAAEITESPGPAGRTRSRRPPNVEEEAPVPEVAVTLPLRPFGPMIDNGEGGEMQTLQYWPFSTADLYNWKNNNPSFSENPTKLTNLVDPVMFSHQPTWDDCHQLLGALFTTEERDRILLEARKHVPGLDGRPTQLPHLIDDRFPLRRPNWDPNTPAGREHLSIYRQTLVAGLRAASRRPTNLAKVREVVQGPTESPSVFLERLMEAYRRFTPFDPQAEDQKASVAMAFIGQSALDIRHKLQRLDGIQDLTLRDLVKEADKVFHKRETEEEREQRKEAERERREDKRDQKRDRALTKILAAVVDRREGRVGRGRQRESRDLGPCSRPRLDHNQCAFCKEKGHWARECPKKPKRKETQVRAHPAILALEEEDXGRRSSDPLRELRAKFQVEGTSIDFEVDTGAVHSVLRRPLGSLSNKRSLVMGANGSQFHPWTTKRTMNLGKGEIRHSFLVIPNCPSPILGRDLLTKLRAQISFEPTGPEVVFRNPAVEPYSETEVVTTLKIATDEEWRQMYNLEPEQPETPVEKWLERYPKSWAETAGIGLAKFQPPVVITLKTTATPVQIRQYPMSKEAREGVRPHIKRLLQLGVLVVCQSPWNTPLLPVKKPGTGDYRPVQDLRAINSQVQNIHPTVPNPYNLLSSLGPDKTWYTVLDLKDAFFCLTLHPDSQPLFAFEWNDPDAGISGQLTWTRLPQGFKNSPTIFDEALHQDLSLFRQLHPQVTLLQYVDDLLLAATTEEECKRGTEDLVAELGRLGYTASAKKAQLCKQKVTFLGYTIKDGXRWLTEARKRTVTQIPAPETRKQLREFLGTAGFCRLWIPGFVSLAAPLYSLTKGDAEFTWTEIHQQAFDNIKKALLSAPALALPNIEKPFTLYIEEKGGVARGVLTQELGPWKRPVAYLSKKLDSVASGWPRCLKAIAAAAILVKDADKITLGQKLTVISPHTLETXIRKPPDRWLTNARITHYQSILLDKDRVTFGLPHSLNPATLLLDTTEDAVLHTCQDILAEEAGIRRDLQDQPLLHSEVTWFTDGSSFLQEGKRQAGAAVVSLSEVIWSQSLPEGTSAQKAELIALTMALRLAEGKRATIYTDSHYAFATAHVHGAIYQQRGLLTSAGKEIKYKEQILDLLTAVQLPKELAIVHCPGHQKGEDSVAKGNRKADEEARSAALRGLKALTVSEKVGLKTQGEKDSMDLQGMELAALSYVQHLHRLTHLGPKKMQELLDSQNFSLAPGRARELTEQVAKACQPCQLVNAYPTKGIEGKRLRGNRPGQSWEVDFTEVQPAKYGLKYLLVFVDTFSGWVEAFPTKHETALVVAKKILEEILPRFGLSQVIGSDNGPAFVAQVXQGLARILGINWKLHCAYRPQSSGQVEKMNRTIKETLTKLALETGVKDWTMLLPYALYRARNTPTPSLCNLTPFEILFGTSPPVKHLNPLDLDSCSSTPLLIRLKALEGVQQSVWKQLASAYQPGDIKVPHSYKVGDAVYVRRHQTXNLEPRWKGPFIVLLTTPTAVKVDGISAWVHASHLKPAPAPGPEWTLEKTDNPLKLRLRRRDK
SIO_010081: LOC126000413
subclass of: SO_0000673
so part of: LOC126000413
location: complement(1050013..1055267)
location: region:1050013-1055267:-1
so has part: feature:1050013-1055267:-1:exon

XP_049623671.1
type: Protein
SIO_000068: ncbiprotein

position:1050013:-1
position: 1050013
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1055267:-1
position: 1055267
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1050013-1055267:-1:exon

LOC126000426
type: Gene
subclass of: SO_0000704
RO_0002162: 109475
gene: LOC126000426
note: uncharacterized LOC126000426; Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
so part of: sequence
location: complement(1075145..1075263)
location: region:1075145-1075263:-1
so has part: feature:1075145-1075263:-1:exon

126000426
type: Gene
SIO_000068: ncbigene

position:1075145:-1
position: 1075145
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1075263:-1
position: 1075263
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1075145-1075263:-1:exon

LOC126000426
type: Exon
subclass of: SO_0000147
RO_0002162: 109475
gene: LOC126000426
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF00414
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
SIO_010081: LOC126000426
subclass of: SO_0000673
so part of: LOC126000426
location: complement(1075145..1075263)
location: region:1075145-1075263:-1
so has part: feature:1075145-1075263:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1075145-1075263:-1:exon

LOC126000427
type: Gene
subclass of: SO_0000704
RO_0002162: 109475
gene: LOC126000427
note: small nucleolar RNA SNORA51; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(1106567..1106699)
location: region:1106567-1106699:-1
so has part: feature:1106567-1106699:-1:exon
subclass of: SO_0000578

126000427
type: Gene
SIO_000068: ncbigene

position:1106567:-1
position: 1106567
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1106699:-1
position: 1106699
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1106567-1106699:-1:exon

LOC126000427
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 109475
nc RNA class: snoRNA
gene: LOC126000427
product: small nucleolar RNA SNORA51
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF00432
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_007492740.1
SIO_010081: LOC126000427
subclass of: SO_0000673
so part of: LOC126000427
location: complement(1106567..1106699)
location: region:1106567-1106699:-1
so has part: feature:1106567-1106699:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1106567-1106699:-1:exon

LOC126000416
type: Gene
subclass of: SO_0000704
RO_0002162: 109475
gene: LOC126000416
note: ATP-dependent RNA helicase DDX3X-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1148784..1163283
location: region:1148784-1163283:1
so has part: feature:1148784-1163283:1:exon
subclass of: SO_0000010

126000416
type: Gene
SIO_000068: ncbigene

position:1148784:1
position: 1148784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1163283:1
position: 1163283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1148784-1163283:1:exon

LOC126000416
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 109475
gene: LOC126000416
product: ATP-dependent RNA helicase DDX3X-like, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins
transcript id: XM_049767719.1
SIO_010081: LOC126000416
subclass of: SO_0000673
so part of: LOC126000416
location: join(1148784..1148825,1151400..1151460,1152157..1152204,1155580..1155709,1157407..1157565,1157650..1157749,1158110..1158245,1158368..1158453,1158788..1158886,1158969..1159129,1160018..1160162,1160551..1160695,1160874..1161055,1161205..1161322,1161763..1161928,1162726..1162850,1163201..1163283)
location: region:1148784-1163283:1
so has part: feature:1148784-1148825:1:exon
so has part: feature:1151400-1151460:1:exon
so has part: feature:1152157-1152204:1:exon
so has part: feature:1155580-1155709:1:exon
so has part: feature:1157407-1157565:1:exon
so has part: feature:1157650-1157749:1:exon
so has part: feature:1158110-1158245:1:exon
so has part: feature:1158368-1158453:1:exon
so has part: feature:1158788-1158886:1:exon
so has part: feature:1158969-1159129:1:exon
so has part: feature:1160018-1160162:1:exon
so has part: feature:1160551-1160695:1:exon
so has part: feature:1160874-1161055:1:exon
so has part: feature:1161205-1161322:1:exon
so has part: feature:1161763-1161928:1:exon
so has part: feature:1162726-1162850:1:exon
so has part: feature:1163201-1163283:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1148784-1148825:1:exon

position:1148825:1
position: 1148825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1151400-1151460:1:exon

position:1151400:1
position: 1151400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1151460:1
position: 1151460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1152157-1152204:1:exon

position:1152157:1
position: 1152157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1152204:1
position: 1152204
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1155580-1155709:1:exon

position:1155580:1
position: 1155580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1155709:1
position: 1155709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1157407-1157565:1:exon

position:1157407:1
position: 1157407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1157565:1
position: 1157565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1157650-1157749:1:exon

position:1157650:1
position: 1157650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1157749:1
position: 1157749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1158110-1158245:1:exon

position:1158110:1
position: 1158110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1158245:1
position: 1158245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1158368-1158453:1:exon

position:1158368:1
position: 1158368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1158453:1
position: 1158453
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1158788-1158886:1:exon

position:1158788:1
position: 1158788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1158886:1
position: 1158886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1158969-1159129:1:exon

position:1158969:1
position: 1158969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1159129:1
position: 1159129
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1160018-1160162:1:exon

position:1160018:1
position: 1160018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1160162:1
position: 1160162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1160551-1160695:1:exon

position:1160551:1
position: 1160551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1160695:1
position: 1160695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1160874-1161055:1:exon

position:1160874:1
position: 1160874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1161055:1
position: 1161055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1161205-1161322:1:exon

position:1161205:1
position: 1161205
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1161322:1
position: 1161322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:1161763-1161928:1:exon

position:1161763:1
position: 1161763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1161928:1
position: 1161928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:1162726-1162850:1:exon

position:1162726:1
position: 1162726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1162850:1
position: 1162850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:1163201-1163283:1:exon

position:1163201:1
position: 1163201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC126000416
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 109475
gene: LOC126000416
product: ATP-dependent RNA helicase DDX3X-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
transcript id: XM_049767717.1
SIO_010081: LOC126000416
subclass of: SO_0000673
so part of: LOC126000416
location: join(1148787..1148825,1151400..1151460,1152157..1152204,1155580..1155709,1157407..1157565,1157650..1157749,1158110..1158245,1158368..1158453,1158788..1158886,1158969..1159129,1160018..1160162,1160551..1160695,1160874..1161055,1161205..1161322,1161763..1161916,1162717..1162850,1163201..1163283)
location: region:1148787-1163283:1
so has part: feature:1148787-1148825:1:exon
so has part: feature:1151400-1151460:1:exon
so has part: feature:1152157-1152204:1:exon
so has part: feature:1155580-1155709:1:exon
so has part: feature:1157407-1157565:1:exon
so has part: feature:1157650-1157749:1:exon
so has part: feature:1158110-1158245:1:exon
so has part: feature:1158368-1158453:1:exon
so has part: feature:1158788-1158886:1:exon
so has part: feature:1158969-1159129:1:exon
so has part: feature:1160018-1160162:1:exon
so has part: feature:1160551-1160695:1:exon
so has part: feature:1160874-1161055:1:exon
so has part: feature:1161205-1161322:1:exon
so has part: feature:1161763-1161916:1:exon
so has part: feature:1162717-1162850:1:exon
so has part: feature:1163201-1163283:1:exon

position:1148787:1
position: 1148787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1148787-1148825:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1151400-1151460:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1152157-1152204:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1155580-1155709:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1157407-1157565:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1157650-1157749:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1158110-1158245:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1158368-1158453:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1158788-1158886:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1158969-1159129:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1160018-1160162:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1160551-1160695:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1160874-1161055:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1161205-1161322:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1161763-1161916:1:exon

position:1161916:1
position: 1161916
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:1162717-1162850:1:exon

position:1162717:1
position: 1162717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:1163201-1163283:1:exon

LOC126000416
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 109475
gene: LOC126000416
product: ATP-dependent RNA helicase DDX3X-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
transcript id: XM_049767718.1
SIO_010081: LOC126000416
subclass of: SO_0000673
so part of: LOC126000416
location: join(1148787..1148825,1151400..1151460,1155580..1155709,1157407..1157565,1157650..1157749,1158110..1158245,1158368..1158453,1158788..1158886,1158969..1159129,1160018..1160162,1160551..1160695,1160874..1161055,1161205..1161322,1161763..1161928,1162726..1162850,1163201..1163283)
location: region:1148787-1163283:1
so has part: feature:1148787-1148825:1:exon
so has part: feature:1151400-1151460:1:exon
so has part: feature:1155580-1155709:1:exon
so has part: feature:1157407-1157565:1:exon
so has part: feature:1157650-1157749:1:exon
so has part: feature:1158110-1158245:1:exon
so has part: feature:1158368-1158453:1:exon
so has part: feature:1158788-1158886:1:exon
so has part: feature:1158969-1159129:1:exon
so has part: feature:1160018-1160162:1:exon
so has part: feature:1160551-1160695:1:exon
so has part: feature:1160874-1161055:1:exon
so has part: feature:1161205-1161322:1:exon
so has part: feature:1161763-1161928:1:exon
so has part: feature:1162726-1162850:1:exon
so has part: feature:1163201-1163283:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1148787-1148825:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1151400-1151460:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1155580-1155709:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1157407-1157565:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1157650-1157749:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1158110-1158245:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1158368-1158453:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1158788-1158886:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1158969-1159129:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1160018-1160162:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1160551-1160695:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1160874-1161055:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1161205-1161322:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1161763-1161928:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1162726-1162850:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1163201-1163283:1:exon

LOC126000416
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109475
gene: LOC126000416
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ATP-dependent RNA helicase DDX3X-like isoform X3
translation: MSHKENKQGLNQQFAGLDLNSSDNQSGGGSTASKGRYIPPHIRNREASKGLYEKDRPGWSSSRDEDAYSSFGSRGSRGKSSYFNDCGSGSRGRFGDHGHSDCDGMDSRGDRTGFRKFECSGHRRWSERSEDDDWSKPLPPSERLEQELFFGGNTGINFEKYDDIPVEATGNNCPPHIENFSDVEMGEIIMGNIELTRYTRPTPVQKYAIPIIKEKRDVMACAQTGSGKTAAFLLPILSQIYSDGPGEALKAVKGNGRYGHRKQFPISLVLAPTRELAIQIYEEARKFSYRSRVRPCVVYGGADIVQQMRDLECGCHLLVATPGRLVDMTERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEKETMPPKGVRQTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVENEEKRSFLLDILSATGKNSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALYHFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNANITKDLLALLVEAKQEVPSWLENLAYEHQYRGSSHGRSKRYKFFGGFGATDYRQSSNSSSSSYSSSHASSSLSGESHSSNRGFGGGAYGGFYNRDDGYGGNYNSQGIDWWGN
SIO_010081: LOC126000416
subclass of: SO_0000673
so part of: LOC126000416
location: join(1148787..1148825,1151400..1151460,1152157..1152204,1155580..1155709,1157407..1157565,1157650..1157749,1158110..1158245,1158368..1158453,1158788..1158886,1158969..1159129,1160018..1160162,1160551..1160695,1160874..1161055,1161205..1161322,1161763..1161928,1162726..1162850,1163201..1163283)
location: region:1148787-1163283:1
so has part: feature:1148787-1148825:1:exon
so has part: feature:1151400-1151460:1:exon
so has part: feature:1152157-1152204:1:exon
so has part: feature:1155580-1155709:1:exon
so has part: feature:1157407-1157565:1:exon
so has part: feature:1157650-1157749:1:exon
so has part: feature:1158110-1158245:1:exon
so has part: feature:1158368-1158453:1:exon
so has part: feature:1158788-1158886:1:exon
so has part: feature:1158969-1159129:1:exon
so has part: feature:1160018-1160162:1:exon
so has part: feature:1160551-1160695:1:exon
so has part: feature:1160874-1161055:1:exon
so has part: feature:1161205-1161322:1:exon
so has part: feature:1161763-1161928:1:exon
so has part: feature:1162726-1162850:1:exon
so has part: feature:1163201-1163283:1:exon

XP_049623676.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1148787-1148825:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1151400-1151460:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1152157-1152204:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1155580-1155709:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1157407-1157565:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1157650-1157749:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1158110-1158245:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1158368-1158453:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1158788-1158886:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1158969-1159129:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1160018-1160162:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1160551-1160695:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1160874-1161055:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1161205-1161322:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1161763-1161928:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1162726-1162850:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1163201-1163283:1:exon

LOC126000416
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109475
gene: LOC126000416
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ATP-dependent RNA helicase DDX3X-like isoform X1
translation: MSHKENKQGLNQQFAGLDLNSSDNQSGGGSTASKGRYIPPHIRNREASKGLYEKDRPGWSSSRDEDAYSSFGSRGSRGKSSYFNDCGSGSRGRFGDHGHSDCDGMDSRGDRTGFRKFECSGHRRWSERSEDDDWSKPLPPSERLEQELFFGGNTGINFEKYDDIPVEATGNNCPPHIENFSDVEMGEIIMGNIELTRYTRPTPVQKYAIPIIKEKRDVMACAQTGSGKTAAFLLPILSQIYSDGPGEALKAVKGNGRYGHRKQFPISLVLAPTRELAIQIYEEARKFSYRSRVRPCVVYGGADIVQQMRDLECGCHLLVATPGRLVDMTERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEKETMPPKGVRQTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVENEEKRSFLLDILSATGKNSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALYHFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNANITKDLLALLVEAKQEVPSWLENLAYEHQYRGSSHGRSKSRLSGGFGATDYRQSSNSSSSSYSSSHASSSLSGESHSSNRGFGGGAYGGFYNRDDGYGGNYNSQGIDWWGN
SIO_010081: LOC126000416
subclass of: SO_0000673
so part of: LOC126000416
location: join(1148787..1148825,1151400..1151460,1152157..1152204,1155580..1155709,1157407..1157565,1157650..1157749,1158110..1158245,1158368..1158453,1158788..1158886,1158969..1159129,1160018..1160162,1160551..1160695,1160874..1161055,1161205..1161322,1161763..1161916,1162717..1162850,1163201..1163283)
location: region:1148787-1163283:1
so has part: feature:1148787-1148825:1:exon
so has part: feature:1151400-1151460:1:exon
so has part: feature:1152157-1152204:1:exon
so has part: feature:1155580-1155709:1:exon
so has part: feature:1157407-1157565:1:exon
so has part: feature:1157650-1157749:1:exon
so has part: feature:1158110-1158245:1:exon
so has part: feature:1158368-1158453:1:exon
so has part: feature:1158788-1158886:1:exon
so has part: feature:1158969-1159129:1:exon
so has part: feature:1160018-1160162:1:exon
so has part: feature:1160551-1160695:1:exon
so has part: feature:1160874-1161055:1:exon
so has part: feature:1161205-1161322:1:exon
so has part: feature:1161763-1161916:1:exon
so has part: feature:1162717-1162850:1:exon
so has part: feature:1163201-1163283:1:exon

XP_049623674.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1148787-1148825:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1151400-1151460:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1152157-1152204:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1155580-1155709:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1157407-1157565:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1157650-1157749:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1158110-1158245:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1158368-1158453:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1158788-1158886:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1158969-1159129:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1160018-1160162:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1160551-1160695:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1160874-1161055:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1161205-1161322:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1161763-1161916:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1162717-1162850:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1163201-1163283:1:exon

LOC126000416
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109475
gene: LOC126000416
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ATP-dependent RNA helicase DDX3X-like isoform X2
translation: MSHKENKQGLNQQFAGLDLNSSDNQSGGGSTASRLYEKDRPGWSSSRDEDAYSSFGSRGSRGKSSYFNDCGSGSRGRFGDHGHSDCDGMDSRGDRTGFRKFECSGHRRWSERSEDDDWSKPLPPSERLEQELFFGGNTGINFEKYDDIPVEATGNNCPPHIENFSDVEMGEIIMGNIELTRYTRPTPVQKYAIPIIKEKRDVMACAQTGSGKTAAFLLPILSQIYSDGPGEALKAVKGNGRYGHRKQFPISLVLAPTRELAIQIYEEARKFSYRSRVRPCVVYGGADIVQQMRDLECGCHLLVATPGRLVDMTERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEKETMPPKGVRQTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVENEEKRSFLLDILSATGKNSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALYHFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNANITKDLLALLVEAKQEVPSWLENLAYEHQYRGSSHGRSKRYKFFGGFGATDYRQSSNSSSSSYSSSHASSSLSGESHSSNRGFGGGAYGGFYNRDDGYGGNYNSQGIDWWGN
SIO_010081: LOC126000416
subclass of: SO_0000673
so part of: LOC126000416
location: join(1148787..1148825,1151400..1151460,1155580..1155709,1157407..1157565,1157650..1157749,1158110..1158245,1158368..1158453,1158788..1158886,1158969..1159129,1160018..1160162,1160551..1160695,1160874..1161055,1161205..1161322,1161763..1161928,1162726..1162850,1163201..1163283)
location: region:1148787-1163283:1
so has part: feature:1148787-1148825:1:exon
so has part: feature:1151400-1151460:1:exon
so has part: feature:1155580-1155709:1:exon
so has part: feature:1157407-1157565:1:exon
so has part: feature:1157650-1157749:1:exon
so has part: feature:1158110-1158245:1:exon
so has part: feature:1158368-1158453:1:exon
so has part: feature:1158788-1158886:1:exon
so has part: feature:1158969-1159129:1:exon
so has part: feature:1160018-1160162:1:exon
so has part: feature:1160551-1160695:1:exon
so has part: feature:1160874-1161055:1:exon
so has part: feature:1161205-1161322:1:exon
so has part: feature:1161763-1161928:1:exon
so has part: feature:1162726-1162850:1:exon
so has part: feature:1163201-1163283:1:exon

XP_049623675.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1148787-1148825:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1151400-1151460:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1155580-1155709:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1157407-1157565:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1157650-1157749:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1158110-1158245:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1158368-1158453:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1158788-1158886:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1158969-1159129:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1160018-1160162:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1160551-1160695:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1160874-1161055:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1161205-1161322:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1161763-1161928:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1162726-1162850:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1163201-1163283:1:exon

LOC126000414
type: Gene
subclass of: SO_0000704
RO_0002162: 109475
gene: LOC126000414
note: lysine-specific demethylase 6A-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1170973..1370723
location: region:1170973-1370723:1
so has part: feature:1170973-1370723:1:exon
subclass of: SO_0000010

126000414
type: Gene
SIO_000068: ncbigene

position:1170973:1
position: 1170973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1370723:1
position: 1370723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1170973-1370723:1:exon

LOC126000414
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 109475
gene: LOC126000414
product: lysine-specific demethylase 6A-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 41 Proteins
transcript id: XM_049767715.1
SIO_010081: LOC126000414
subclass of: SO_0000673
so part of: LOC126000414
location: join(1170973..1171127,1171328..1171391,1192335..1192443,1195181..1195230,1209727..1209785,1230878..1230998,1235470..1235524,1238089..1238123,1259263..1259356,1262282..1262408,1273242..1273340,1273467..1273686,1274123..1274257,1274895..1275071,1277146..1277189,1278157..1278317,1283529..1284259,1294367..1294496,1297278..1297383,1298328..1298533,1316157..1316221,1316302..1316376,1320619..1320767,1324437..1324551,1342816..1343003,1346811..1346952,1348094..1348220,1350283..1350453,1368249..1368409,1369257..1369369,1370331..1370492,1370602..1370723)
location: region:1170973-1370723:1
so has part: feature:1170973-1171127:1:exon
so has part: feature:1171328-1171391:1:exon
so has part: feature:1192335-1192443:1:exon
so has part: feature:1195181-1195230:1:exon
so has part: feature:1209727-1209785:1:exon
so has part: feature:1230878-1230998:1:exon
so has part: feature:1235470-1235524:1:exon
so has part: feature:1238089-1238123:1:exon
so has part: feature:1259263-1259356:1:exon
so has part: feature:1262282-1262408:1:exon
so has part: feature:1273242-1273340:1:exon
so has part: feature:1273467-1273686:1:exon
so has part: feature:1274123-1274257:1:exon
so has part: feature:1274895-1275071:1:exon
so has part: feature:1277146-1277189:1:exon
so has part: feature:1278157-1278317:1:exon
so has part: feature:1283529-1284259:1:exon
so has part: feature:1294367-1294496:1:exon
so has part: feature:1297278-1297383:1:exon
so has part: feature:1298328-1298533:1:exon
so has part: feature:1316157-1316221:1:exon
so has part: feature:1316302-1316376:1:exon
so has part: feature:1320619-1320767:1:exon
so has part: feature:1324437-1324551:1:exon
so has part: feature:1342816-1343003:1:exon
so has part: feature:1346811-1346952:1:exon
so has part: feature:1348094-1348220:1:exon
so has part: feature:1350283-1350453:1:exon
so has part: feature:1368249-1368409:1:exon
so has part: feature:1369257-1369369:1:exon
so has part: feature:1370331-1370492:1:exon
so has part: feature:1370602-1370723:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1170973-1171127:1:exon

position:1171127:1
position: 1171127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1171328-1171391:1:exon

position:1171328:1
position: 1171328
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1171391:1
position: 1171391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1192335-1192443:1:exon

position:1192335:1
position: 1192335
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1192443:1
position: 1192443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1195181-1195230:1:exon

position:1195181:1
position: 1195181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1195230:1
position: 1195230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1209727-1209785:1:exon

position:1209727:1
position: 1209727
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1209785:1
position: 1209785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1230878-1230998:1:exon

position:1230878:1
position: 1230878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1230998:1
position: 1230998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1235470-1235524:1:exon

position:1235470:1
position: 1235470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1235524:1
position: 1235524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1238089-1238123:1:exon

position:1238089:1
position: 1238089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1238123:1
position: 1238123
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1259263-1259356:1:exon

position:1259263:1
position: 1259263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1259356:1
position: 1259356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1262282-1262408:1:exon

position:1262282:1
position: 1262282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1262408:1
position: 1262408
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1273242-1273340:1:exon

position:1273242:1
position: 1273242
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1273340:1
position: 1273340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1273467-1273686:1:exon

position:1273467:1
position: 1273467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1273686:1
position: 1273686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1274123-1274257:1:exon

position:1274123:1
position: 1274123
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1274257:1
position: 1274257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1274895-1275071:1:exon

position:1274895:1
position: 1274895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1275071:1
position: 1275071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:1277146-1277189:1:exon

position:1277146:1
position: 1277146
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1277189:1
position: 1277189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:1278157-1278317:1:exon

position:1278157:1
position: 1278157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1278317:1
position: 1278317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:1283529-1284259:1:exon

position:1283529:1
position: 1283529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1284259:1
position: 1284259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:1294367-1294496:1:exon

position:1294367:1
position: 1294367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1294496:1
position: 1294496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:1297278-1297383:1:exon

position:1297278:1
position: 1297278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1297383:1
position: 1297383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:1298328-1298533:1:exon

position:1298328:1
position: 1298328
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1298533:1
position: 1298533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:1316157-1316221:1:exon

position:1316157:1
position: 1316157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1316221:1
position: 1316221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:1316302-1316376:1:exon

position:1316302:1
position: 1316302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1316376:1
position: 1316376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:1320619-1320767:1:exon

position:1320619:1
position: 1320619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1320767:1
position: 1320767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:1324437-1324551:1:exon

position:1324437:1
position: 1324437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1324551:1
position: 1324551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:1342816-1343003:1:exon

position:1342816:1
position: 1342816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1343003:1
position: 1343003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:1346811-1346952:1:exon

position:1346811:1
position: 1346811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1346952:1
position: 1346952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:1348094-1348220:1:exon

position:1348094:1
position: 1348094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1348220:1
position: 1348220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:1350283-1350453:1:exon

position:1350283:1
position: 1350283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1350453:1
position: 1350453
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:1368249-1368409:1:exon

position:1368249:1
position: 1368249
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1368409:1
position: 1368409
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:1369257-1369369:1:exon

position:1369257:1
position: 1369257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1369369:1
position: 1369369
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 31
SIO_000628: feature:1370331-1370492:1:exon

position:1370331:1
position: 1370331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1370492:1
position: 1370492
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 32
SIO_000628: feature:1370602-1370723:1:exon

position:1370602:1
position: 1370602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC126000414
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109475
gene: LOC126000414
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: lysine-specific demethylase 6A-like
translation: MKSCGVSLVTPAAFGDEEKKMAAGKVSESKEGSLSLTAEEREVLGKLDSRLFGFLRLHEDGARTKTLLSKAVCCYESVILKDEGKVDSDFFCQLGHFNLLLEDYPKALSAYQRYYSLQSDYWKNAAFLYGLGLVYFYYNAFHWATKAFQEVLYIDPSFCRAKEIHLRLGLIFKVNTDYESSLKHFQLALIDCNPCTLSRVEIEFHIAHLYDTQRKYHSAQEAYEQLLQIENLPAQVKAAVLQQLGWMHHSVDLTEDRVTKESTAIQYLQQSLKADPNSGQSWYFLGRCYSSIGKVQDAFISYRQSIDKSEASADTWCSIGILYQQQSQPMDALQAYICAVQLDHGHAAAWIDLGTLYESCNQPQDAIKCYLNAARSKNCTNNSLLSERIKFLQAQLCILPQDSLQNKTKLLPFIEEAWSLPIPAELTSRQGAMNTAQQTYKAHHVNTDLGLSQTSISQQFLPVHPPTEANDLSSLVKRKRTSTPAKVNNYILSLSHSLESQFDSMQQVCMSMSRDSNLVGIXHIIGNGHNKNVLYLQQNILSLPHDSTNLTDSTESWRKELCNFIQGFHQNQNSLFIEPNDKQPLFSSGLAQCFHVANTGIQKLSGHRTLPSNSVSKEAALNHLSSHISTSCGKQDIKFAEESKMSGKKSLVPEISKHTEYITNGYAGIEELSDYVHQLTASPNQISDNPHTSALLEEKPNDSAEIGTYDKDNSINPVTHITNNSVASSTSSISCIPSPKSTEKMSTLGVSDLNSSHRIFYTVNKEELENSESSKATILPVISHIPDSQSIPSMSVSIYSSSTEVLKTYRNLGKNGLSNNCILLDKCPPPRPPPSPYPPLPKDKLNPPTPSIYLENKRDAFFPPLHQFCTNPKNPVTVIRGLAGALKLDLGLFSTKTLVETNNEHLVEVRTQLLQPADENWDPTGTKKIWRCENNRSHTTIAKYAQYQVSSFQESLKEESEKRVQHKESPDYESASSDISGTRRKAPFKTIKFGTNIDLSDDKMWRLQLHELTKLPAFVRVVSAGNLLSHIGHSILGMNTVQLYMKVPGSRTPGHQEKNNFCSVNINIGPGDCEWFVVPEDYWGVLNDFCEKYNLNFLMSSWWPNLEDLYEANVPVYRFIQRPGDLVWINAGTVHWVQAIGWCNNIAWNVGPLTALQYKLAVERYEWNKLQSVKSVVPMIHLSWNMARNIKVSDIKLYEMIKYCLLKILKQCQFLKEALIKAGKEVIWHGRTSDEPAHYCCICEVEVFDLLFVTSESNFQKTYIVYCQDCAQKTSGNLDDFVVLEQYKMEDLVRIYDQFILALPDATSGGQLSVPGDSIRGLEASPPLYTIEEQREEQGRLLASGALILEASSSRTGLSKPLVAICGFQVNTIRGFSRPPLYTIKEEQREGQAWPSPPMMAVCGFKVDIIRGLQASPPLYTRVEEQREGPANNWLPCLDPGCQLFPGLVIVPPRLACFVFQVDFIRGLQAFSPLFKEKEQREVLGK
SIO_010081: LOC126000414
subclass of: SO_0000673
so part of: LOC126000414
location: join(1170982..1171127,1171328..1171391,1192335..1192443,1195181..1195230,1209727..1209785,1230878..1230998,1235470..1235524,1238089..1238123,1259263..1259356,1262282..1262408,1273242..1273340,1273467..1273686,1274123..1274257,1274895..1275071,1277146..1277189,1278157..1278317,1283529..1284259,1294367..1294496,1297278..1297383,1298328..1298533,1316157..1316221,1316302..1316376,1320619..1320767,1324437..1324551,1342816..1343003,1346811..1346952,1348094..1348220,1350283..1350453,1368249..1368409,1369257..1369369,1370331..1370492,1370602..1370723)
location: region:1170982-1370723:1
so has part: feature:1170982-1171127:1:exon
so has part: feature:1171328-1171391:1:exon
so has part: feature:1192335-1192443:1:exon
so has part: feature:1195181-1195230:1:exon
so has part: feature:1209727-1209785:1:exon
so has part: feature:1230878-1230998:1:exon
so has part: feature:1235470-1235524:1:exon
so has part: feature:1238089-1238123:1:exon
so has part: feature:1259263-1259356:1:exon
so has part: feature:1262282-1262408:1:exon
so has part: feature:1273242-1273340:1:exon
so has part: feature:1273467-1273686:1:exon
so has part: feature:1274123-1274257:1:exon
so has part: feature:1274895-1275071:1:exon
so has part: feature:1277146-1277189:1:exon
so has part: feature:1278157-1278317:1:exon
so has part: feature:1283529-1284259:1:exon
so has part: feature:1294367-1294496:1:exon
so has part: feature:1297278-1297383:1:exon
so has part: feature:1298328-1298533:1:exon
so has part: feature:1316157-1316221:1:exon
so has part: feature:1316302-1316376:1:exon
so has part: feature:1320619-1320767:1:exon
so has part: feature:1324437-1324551:1:exon
so has part: feature:1342816-1343003:1:exon
so has part: feature:1346811-1346952:1:exon
so has part: feature:1348094-1348220:1:exon
so has part: feature:1350283-1350453:1:exon
so has part: feature:1368249-1368409:1:exon
so has part: feature:1369257-1369369:1:exon
so has part: feature:1370331-1370492:1:exon
so has part: feature:1370602-1370723:1:exon

XP_049623672.1
type: Protein
SIO_000068: ncbiprotein

position:1170982:1
position: 1170982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1170982-1171127:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1171328-1171391:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1192335-1192443:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1195181-1195230:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1209727-1209785:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1230878-1230998:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1235470-1235524:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1238089-1238123:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1259263-1259356:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1262282-1262408:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1273242-1273340:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1273467-1273686:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1274123-1274257:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1274895-1275071:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1277146-1277189:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1278157-1278317:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1283529-1284259:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1294367-1294496:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1297278-1297383:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1298328-1298533:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1316157-1316221:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1316302-1316376:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1320619-1320767:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:1324437-1324551:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:1342816-1343003:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:1346811-1346952:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:1348094-1348220:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:1350283-1350453:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:1368249-1368409:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:1369257-1369369:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:1370331-1370492:1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:1370602-1370723:1:exon

LOC126000417
type: Gene
subclass of: SO_0000704
RO_0002162: 109475
gene: LOC126000417
note: polyadenylate-binding protein-interacting protein 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(1176774..1177476)
location: region:1176774-1177476:-1
so has part: feature:1176774-1177476:-1:exon

126000417
type: Gene
SIO_000068: ncbigene

position:1176774:-1
position: 1176774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1177476:-1
position: 1177476
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1176774-1177476:-1:exon

LOC126000417
type: Exon
subclass of: SO_0000147
RO_0002162: 109475
gene: LOC126000417
experiment: COORDINATES: polyA evidence [ECO:0006239]
pseudo: true
SIO_010081: LOC126000417
subclass of: SO_0000673
so part of: LOC126000417
location: complement(1176774..1177476)
location: region:1176774-1177476:-1
so has part: feature:1176774-1177476:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1176774-1177476:-1:exon

LOC126000421
type: Gene
subclass of: SO_0000704
RO_0002162: 109475
gene: LOC126000421
note: small nucleolar RNA SNORA22; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(1267171..1267300)
location: region:1267171-1267300:-1
so has part: feature:1267171-1267300:-1:exon
subclass of: SO_0000578

126000421
type: Gene
SIO_000068: ncbigene

position:1267171:-1
position: 1267171
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1267300:-1
position: 1267300
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1267171-1267300:-1:exon

LOC126000421
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 109475
nc RNA class: snoRNA
gene: LOC126000421
product: small nucleolar RNA SNORA22
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF00414
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_007492736.1
SIO_010081: LOC126000421
subclass of: SO_0000673
so part of: LOC126000421
location: complement(1267171..1267300)
location: region:1267171-1267300:-1
so has part: feature:1267171-1267300:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1267171-1267300:-1:exon

LOC126000432
type: Gene
subclass of: SO_0000704
RO_0002162: 109475
gene: LOC126000432
note: U6 spliceosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(1317018..1317121)
location: region:1317018-1317121:-1
so has part: feature:1317018-1317121:-1:exon
subclass of: SO_0000623

126000432
type: Gene
SIO_000068: ncbigene

position:1317018:-1
position: 1317018
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1317121:-1
position: 1317121
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1317018-1317121:-1:exon

LOC126000432
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 109475
nc RNA class: snRNA
gene: LOC126000432
product: U6 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_007492745.1
SIO_010081: LOC126000432
subclass of: SO_0000673
so part of: LOC126000432
location: complement(1317018..1317121)
location: region:1317018-1317121:-1
so has part: feature:1317018-1317121:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1317018-1317121:-1:exon

LOC126000425
type: Gene
subclass of: SO_0000704
RO_0002162: 109475
gene: LOC126000425
note: small nucleolar RNA SNORA22; Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(1328659..1328788)
location: region:1328659-1328788:-1
so has part: feature:1328659-1328788:-1:exon
subclass of: SO_0000578

126000425
type: Gene
SIO_000068: ncbigene

position:1328659:-1
position: 1328659
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1328788:-1
position: 1328788
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1328659-1328788:-1:exon

LOC126000425
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 109475
nc RNA class: snoRNA
gene: LOC126000425
product: small nucleolar RNA SNORA22
inference: COORDINATES: nucleotide motif:Rfam:14.6:RF00414
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_007492739.1
SIO_010081: LOC126000425
subclass of: SO_0000673
so part of: LOC126000425
location: complement(1328659..1328788)
location: region:1328659-1328788:-1
so has part: feature:1328659-1328788:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1328659-1328788:-1:exon