Suncus etruscus isolate mSunEtr1 chromosome Y, mSunEtr1.pri.cur, whole genome shotgun sequence.
Suncus etruscus (white-toothed pygmy shrew)
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Soricidae; Crocidurinae; Suncus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM043993.1.\nAssembly name: mSunEtr1.pri.cur\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2022/07/06. The original whole-genome shotgun project has the\naccession JAMYDX000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 25-NOV-2021\nAssembly Method :: FALCON v. 2.0.2; FALCON-Unzip v. 8.0.1;\n purge_dups v. 1.0.0; scaff10x v. 2.0.3;\n bionano solve v. 3.4.0; salsa v. 2.2;\n gcpp v. 2.0.2; merfin v. 1.0; freebayes\n v. 1.3.1\nAssembly Name :: mSunEtr1.pri.cur\nDiploid :: Principal Haplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 142.65x\nSequencing Technology :: PacBio Sequel CLR; 10X linked reads;\n Bionano DLS; Arima Hi-C v1\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Updated annotation\nAnnotation Name :: GCF_024139225.1-RS_2023_02\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 02/26/2023\n##Genome-Annotation-Data-END##
Susanne Meyer, Jessica Antosiewicz-Bourget
heterogeneous nuclear ribonucleoprotein K-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
zinc finger X-chromosomal protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon.
U6 spliceosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00026
Derived by automated computational analysis using gene prediction method: cmsearch.
uncharacterized LOC126000418; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00001
small nucleolar RNA SNORA22; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00414
Bardet-Biedl syndrome 7 protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 2 codons; substituted 2 bases at 2 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: Bardet-Biedl syndrome 7 protein-like
uncharacterized LOC126000424; Derived by automated computational analysis using gene prediction method: cmsearch.
small nucleolar RNA SNORA51; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00432
sex determining region Y; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins
uncharacterized LOC126000420; Derived by automated computational analysis using gene prediction method: cmsearch.
uncharacterized LOC126000413; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 3 codons; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 3 codons; deleted 2 bases in 1 codon; substituted 2 bases at 2 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: uncharacterized protein LOC126000413
uncharacterized LOC126000426; Derived by automated computational analysis using gene prediction method: cmsearch.
ATP-dependent RNA helicase DDX3X-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ATP-dependent RNA helicase DDX3X-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins
ATP-dependent RNA helicase DDX3X-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
ATP-dependent RNA helicase DDX3X-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
ATP-dependent RNA helicase DDX3X-like isoform X3
ATP-dependent RNA helicase DDX3X-like isoform X1
ATP-dependent RNA helicase DDX3X-like isoform X2
lysine-specific demethylase 6A-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 41 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: lysine-specific demethylase 6A-like
polyadenylate-binding protein-interacting protein 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]