Fluoribacter dumoffii Tex-KL plasmid pLDTK, whole genome shotgun sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Legionellales; Legionellaceae; Fluoribacter.
Whole-Genome Sequences of two Legionella dumoffii strains
Submitted (13-OCT-2011) State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, No. 20, Dongdajie Street, Fengtai District, Beijing, Beijing 100071, China
REFSEQ INFORMATION: The reference sequence is identical to\nCM001372.1.\nSource DNA is available from State Key Laboratory of Pathogen and\nBiosecurity, Beijing Institute of Microbiology and Epidemiology,\nBeijing, 100071, P. R. China. Bacteria available from ATCC (ATCC\n33343).\nThe complete plasmid pLD-TEX-KL was deposited in GenBank Accession\nNumber AB297474.\nThe chromosome sequence was aligned to the Legionella pneumophila\nParis reference genome in NC_006368. A single contig was split into\ntwo, AGVT01000019 and AGVT01000001, in order to make dnaA the first\ngene in the chromosome. Consequently, the first and last contigs\nare contiguous.\nSource DNA is available from State Key Laboratory of Pathogen and\nBiosecurity, Beijing Institute of Microbiology and Epidemiology,\nBeijing, 100071, P. R. China. Bacteria available from ATCC (ATCC\n33343).\nThe complete plasmid pLD-TEX-KL was deposited in GenBank Accession\nNumber AB297474.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 02-AUG-2011\nAssembly Method :: SOAPdenovo v. 1.06\nGenome Coverage :: 159x\nSequencing Technology :: Illumina Hiseq 2000\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/19/2022 11:57:19\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,346\nCDSs (total) :: 3,295\nGenes (coding) :: 3,277\nCDSs (with protein) :: 3,277\nGenes (RNA) :: 51\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 41\nncRNAs :: 4\nPseudo Genes (total) :: 18\nCDSs (without protein) :: 18\nPseudo Genes (ambiguous residues) :: 0 of 18\nPseudo Genes (frameshifted) :: 5 of 18\nPseudo Genes (incomplete) :: 13 of 18\nPseudo Genes (internal stop) :: 4 of 18\nPseudo Genes (multiple problems) :: 3 of 18\n##Genome-Annotation-Data-END##
postmortem lung specimen from a patient with fatal atypical pneumonia
COORDINATES: similar to AA sequence:RefSeq:WP_014845020.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
RepB family plasmid replication initiator protein
COORDINATES: similar to AA sequence:RefSeq:WP_010655311.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845018.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010655313.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845164.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019350432.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235601.1
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_010655317.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014845161.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845160.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845159.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845158.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845157.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011212475.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655325.1
type IV conjugative transfer system pilin TraA
COORDINATES: similar to AA sequence:RefSeq:WP_013347308.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_019235302.1
TraE/TraK family type IV conjugative transfer system protein
COORDINATES: similar to AA sequence:RefSeq:WP_013347310.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_013347311.1
COORDINATES: similar to AA sequence:RefSeq:WP_004450431.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347313.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235307.1
type-F conjugative transfer system protein TrbI
COORDINATES: similar to AA sequence:RefSeq:WP_019235308.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_004450424.1
conjugal transfer pilus assembly protein TraU
COORDINATES: similar to AA sequence:RefSeq:WP_011212488.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_010655336.1
type-F conjugative transfer system mating-pair stabilization protein TraN
COORDINATES: similar to AA sequence:RefSeq:WP_004450417.1
type-F conjugative transfer system pilin assembly protein TraF
COORDINATES: similar to AA sequence:RefSeq:WP_010655338.1
type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
COORDINATES: similar to AA sequence:RefSeq:WP_010655339.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235315.1
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004450411.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_019235317.1
conjugative transfer relaxase/helicase TraI
COORDINATES: similar to AA sequence:RefSeq:WP_006871064.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212497.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235319.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655346.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212500.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655349.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655350.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212504.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655352.1
COORDINATES: similar to AA sequence:RefSeq:WP_010598640.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212512.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212513.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212515.1
COORDINATES: similar to AA sequence:RefSeq:WP_018276022.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212518.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212519.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655363.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212521.1
COORDINATES: similar to AA sequence:RefSeq:WP_014844020.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014845086.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212524.1
nucleotidyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF016144.2
COORDINATES: similar to AA sequence:RefSeq:WP_001667685.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558224.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012792.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024898.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002580055.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655373.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655374.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845101.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
DHA2 family efflux MFS transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014845102.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845103.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014845104.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_015005428.1
COORDINATES: similar to AA sequence:RefSeq:WP_004192205.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
ribosome-associated ATPase/putative transporter RbbA
COORDINATES: similar to AA sequence:RefSeq:WP_019350448.1
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_015444316.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845092.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006871920.1
GO:0015385 - sodium:proton antiporter activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010655385.1
GO:0018454 - acetoacetyl-CoA reductase activity [Evidence IEA]
GO:0042619 - poly-hydroxybutyrate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015961565.1
COORDINATES: similar to AA sequence:RefSeq:WP_003631568.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011216273.1
cation transporting ATPase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF022018.2
COORDINATES: similar to AA sequence:RefSeq:WP_010655390.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655391.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019350456.1
structural toxin protein (hemagglutinin/hemolysin) RtxA
COORDINATES: protein motif:HMM:NF013541.2
GO:0009374 - biotin binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF020037.2
COORDINATES: similar to AA sequence:RefSeq:WP_011212547.1
aminoglycoside adenylyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019350461.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655397.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014845063.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655399.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655400.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655401.1
ankyrin repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010655402.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845058.1
COORDINATES: similar to AA sequence:RefSeq:WP_006101529.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655405.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845056.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845055.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845054.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845053.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845052.1
COORDINATES: protein motif:HMM:NF020296.2
COORDINATES: protein motif:HMM:NF013775.2
COORDINATES: protein motif:HMM:NF025054.2
COORDINATES: similar to AA sequence:RefSeq:WP_011212566.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655415.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212568.1
bifunctional GNAT family N-acetyltransferase/aminoglycoside 3'-phosphotransferase/choline kinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011212569.1
aminoglycoside phosphotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019233389.1
GO:0043867 - 7-cyano-7-deazaguanine tRNA-ribosyltransferase activity [Evidence IEA]; GO:0033739 - preQ1 synthase activity [Evidence IEA]
GO:0008616 - queuosine biosynthetic process [Evidence IEA]
Catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
NADPH-dependent 7-cyano-7-deazaguanine reductase QueF
COORDINATES: similar to AA sequence:RefSeq:WP_019349571.1
GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0032775 - DNA methylation on adenine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019349572.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212571.1
COORDINATES: similar to AA sequence:RefSeq:WP_019349574.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655423.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845040.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845039.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212573.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845037.1
COORDINATES: similar to AA sequence:RefSeq:WP_003632074.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655429.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845034.1
COORDINATES: similar to AA sequence:RefSeq:WP_006870502.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845032.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845031.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212584.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212585.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212587.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845026.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235354.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235283.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655442.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845022.1
COORDINATES: similar to AA sequence:RefSeq:WP_014845021.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein