Thermoanaerobacterium saccharolyticum JW/SL-YS485 plasmid pMU3262, complete sequence.
Thermoanaerobacterium saccharolyticum JW/SL-YS485
Bacteria; Bacillota; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacterium.
Profile of secreted hydrolases, associated proteins, and SlpA in Thermoanaerobacterium saccharolyticum during the degradation of hemicellulose
Submitted (08-DEC-2011) Mascoma Corporation, 67 Etna Road, Suite 300, Lebanon, NH 03766, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP003185.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 06/11/2023 14:26:11\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,884\nCDSs (total) :: 2,807\nGenes (coding) :: 2,792\nCDSs (with protein) :: 2,792\nGenes (RNA) :: 77\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 57\nncRNAs :: 5\nPseudo Genes (total) :: 15\nCDSs (without protein) :: 15\nPseudo Genes (ambiguous residues) :: 0 of 15\nPseudo Genes (frameshifted) :: 8 of 15\nPseudo Genes (incomplete) :: 10 of 15\nPseudo Genes (internal stop) :: 4 of 15\nPseudo Genes (multiple problems) :: 6 of 15\nCRISPR Arrays :: 6\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_015297546.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009052284.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759508.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759509.1
polynucleotide adenylyltransferase region
COORDINATES: similar to AA sequence:RefSeq:WP_014759510.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759511.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759512.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759513.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014759514.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759515.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759516.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759517.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759518.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759519.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759520.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759521.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759522.1
COORDINATES: protein motif:HMM:NF015461.2
GO:0005576 - extracellular region [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014759523.1
GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF039653.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759525.1
COORDINATES: protein motif:HMM:NF013632.2
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014759527.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759528.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759529.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759530.1
COORDINATES: similar to AA sequence:RefSeq:WP_015297549.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014759533.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759534.1
GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014759535.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759536.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759537.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759538.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759539.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759541.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014759542.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759543.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759545.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759546.1
CRISPR system precrRNA processing endoribonuclease RAMP protein Cas6
COORDINATES: similar to AA sequence:RefSeq:WP_014759547.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759548.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759549.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759550.1
COORDINATES: protein motif:HMM:NF017355.2
toxin-antitoxin system HicB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_014759552.1
COORDINATES: similar to AA sequence:RefSeq:WP_015908757.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014759554.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759555.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759556.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759557.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759558.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759559.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759560.1
COORDINATES: similar to AA sequence:RefSeq:WP_003512380.1
COORDINATES: similar to AA sequence:RefSeq:WP_013788504.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759564.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759565.1
COORDINATES: similar to AA sequence:RefSeq:WP_008713133.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014759567.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759568.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759569.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759570.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759571.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759572.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759573.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759574.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759575.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759576.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759577.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759578.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759579.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759580.1
GO:0003676 - nucleic acid binding [Evidence IEA]
S1 RNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014759582.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759583.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759585.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759586.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759587.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759588.1
type II secretion system F family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014759590.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759591.1
PQQ-binding-like beta-propeller repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_014759592.1
copper amine oxidase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014759593.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759594.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759595.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759596.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759597.1
COORDINATES: protein motif:HMM:NF015947.2
COORDINATES: protein motif:HMM:NF014069.2
COORDINATES: similar to AA sequence:RefSeq:WP_014759599.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759600.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759601.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759602.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759603.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759605.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759606.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759607.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759608.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759609.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759610.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759611.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759612.1
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014759613.1
GO:0004170 - dUTP diphosphatase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
GO:0006226 - dUMP biosynthetic process [Evidence IEA]; GO:0046081 - dUTP catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014759614.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759615.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759616.1
aspartyl-phosphate phosphatase Spo0E family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014759617.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759618.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014759620.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759621.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759622.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003869740.1
GO:0030261 - chromosome condensation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014759624.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759625.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759626.1
GO:0000166 - nucleotide binding [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014759627.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759628.1
host-nuclease inhibitor Gam family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014759629.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759630.1
COORDINATES: similar to AA sequence:RefSeq:WP_004399540.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014759632.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759633.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014759634.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759635.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759636.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759637.1
GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
ADP-ribosylglycohydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014759638.1
COORDINATES: similar to AA sequence:RefSeq:WP_015312036.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759640.1
GO:0006270 - DNA replication initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014759641.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759642.1
COORDINATES: similar to AA sequence:RefSeq:WP_014759643.1
TraM recognition domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014759644.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014759645.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]