Xanthomonas campestris pv. musacearum NCPPB 4379 plasmid pXCM49, complete sequence.
Xanthomonas campestris pv. musacearum NCPPB 4379
Bacteria; Pseudomonadota; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.
Genome-wide sequencing reveals two major sub-lineages in the genetically monomorphic pathogen xanthomonas campestris pathovar musacearum
Submitted (19-DEC-2018) Biosciences, University of Exeter, Geoffrey Pope Building, Stocker Road, Exeter, Devon EX4 4QD, United Kingdom (Great Britain)
Submitted (06-MAY-2012) University of Exeter, Stocker Road, Exeter, Devon EX4 4QD, UK
REFSEQ INFORMATION: The reference sequence is identical to\nCP034656.1.\nBacteria and source DNA available from National Collection of Plant\nPathogenic Bacteria (NCPPB).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4; Pilon v. 1.22\nAssembly Name :: NCPPB4379_pacbio\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 494.0x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/19/2022 13:50:08\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,291\nCDSs (total) :: 4,142\nGenes (coding) :: 3,822\nCDSs (with protein) :: 3,822\nGenes (RNA) :: 149\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 90\nPseudo Genes (total) :: 320\nCDSs (without protein) :: 320\nPseudo Genes (ambiguous residues) :: 0 of 320\nPseudo Genes (frameshifted) :: 224 of 320\nPseudo Genes (incomplete) :: 138 of 320\nPseudo Genes (internal stop) :: 51 of 320\nPseudo Genes (multiple problems) :: 87 of 320\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017162817.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016957.2
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_017164020.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113424.1
COORDINATES: similar to AA sequence:RefSeq:WP_017160738.1
GO:0009291 - unidirectional conjugation [Evidence IEA]
P-type conjugative transfer protein TrbL
COORDINATES: similar to AA sequence:RefSeq:WP_019238158.1
COORDINATES: similar to AA sequence:RefSeq:WP_019238157.1
P-type conjugative transfer protein TrbG
COORDINATES: similar to AA sequence:RefSeq:WP_017113420.1
COORDINATES: similar to AA sequence:RefSeq:WP_008575014.1
COORDINATES: similar to AA sequence:RefSeq:WP_008575015.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113417.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113416.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017113415.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113414.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113413.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113412.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113411.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017113410.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113472.1
COORDINATES: similar to AA sequence:RefSeq:WP_005258755.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113473.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113474.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113811.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113485.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113447.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113445.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113439.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113440.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113441.1
COORDINATES: similar to AA sequence:RefSeq:WP_017164699.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113444.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113443.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113814.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113458.1
COORDINATES: similar to AA sequence:RefSeq:WP_017163694.1
COORDINATES: similar to AA sequence:RefSeq:WP_019238176.1
COORDINATES: similar to AA sequence:RefSeq:WP_019238174.1
COORDINATES: protein motif:HMM:NF021981.2
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017113463.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017114728.1
COORDINATES: similar to AA sequence:RefSeq:WP_017162875.1
IncP-type conjugal transfer protein TraG
COORDINATES: similar to AA sequence:RefSeq:WP_006451398.1
COORDINATES: similar to AA sequence:RefSeq:WP_017164084.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113468.1
COORDINATES: similar to AA sequence:RefSeq:WP_007974941.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113981.1
COORDINATES: similar to AA sequence:RefSeq:WP_005995706.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005995704.1