Leptotrichia trevisanii strain JMUB3870 plasmid pJMUB3870-2, complete sequence.
type: Entry
definition: Leptotrichia trevisanii strain JMUB3870 plasmid pJMUB3870-2, complete sequence.
sequence version: NZ_AP019833.1
sequence date: 2022-12-27
sequence: sequence
division: CON
label: NZ_AP019833.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMD00156217
keyword: RefSeq
source: Leptotrichia trevisanii
organism: Leptotrichia trevisanii
taxonomy: Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Leptotrichia.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nAP019833.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 1.8; Circlator v. 1.5.5;\n nanopolish v. 0.10.2; Pilon v. 1.22; CLC\n Genomics Workbench v. 9.5.3\nGenome Coverage :: 70X\nSequencing Technology :: MinION; MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/27/2022 02:57:36\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,636\nCDSs (total) :: 2,571\nGenes (coding) :: 2,539\nCDSs (with protein) :: 2,539\nGenes (RNA) :: 65\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 4\nPseudo Genes (total) :: 32\nCDSs (without protein) :: 32\nPseudo Genes (ambiguous residues) :: 0 of 32\nPseudo Genes (frameshifted) :: 14 of 32\nPseudo Genes (incomplete) :: 16 of 32\nPseudo Genes (internal stop) :: 6 of 32\nPseudo Genes (multiple problems) :: 4 of 32\nCRISPR Arrays :: 4\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 15283
topology: circular
so has quality: SO_0000988
location: 1..15283
location: region:1-15283:1
RO_0002162: 109328

NZ_AP019833
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMD00156217
type: BioSample
SIO_000068: biosample

1
title: Complete Genome Sequence of Leptotrichia trevisanii Strain JMUB3870
author: Watanabe, S.
author: Cui, L.
journal: Unpublished

2
title: Direct Submission
author: Watanabe, S.
author: Cui, L.
journal: Submitted (23-JUL-2019) Contact:Shinya Watanabe Jichi Medical University, Bacteriology; Yakushiji 3311-1, Shimotsuke, Tochigi 329-0498, Japan URL :http://www.jichi.ac.jp/bacteriology/

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15283:1
position: 15283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15283:1:source
so part of: sequence
organism: Leptotrichia trevisanii
mol type: genomic DNA
strain: JMUB3870
isolation source: blood
host: Homo sapiens
plasmid: pJMUB3870-2
country: Japan
collection date: 2014

109328
type: Taxonomy
SIO_000068: taxonomy

JMUB4039_RS13000
type: Gene
subclass of: SO_0000704
RO_0002162: 109328
locus tag: JMUB4039_RS13000
old locus tag: JMUB3870_p2001
so part of: sequence
location: 129..395
location: region:129-395:1
so has part: feature:129-395:1:exon
subclass of: SO_0000010

position:129:1
position: 129
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:395:1
position: 395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:129-395:1:exon

JMUB4039_RS13000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109328
locus tag: JMUB4039_RS13000
old locus tag: JMUB3870_p2001
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003006096.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SemiSWEET family transporter
translation: MNKKKKINTIVGSIGAFIGVFVFITYIPQIIANLGGEKAQPWQPLTASISCLIWVIYGWTKEPKKDFILIVPNLAGVILGFLTFITAL
SIO_010081: JMUB4039_RS13000
subclass of: SO_0000673
so part of: JMUB4039_RS13000
location: 129..395
location: region:129-395:1
so has part: feature:129-395:1:exon

WP_155283287.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:129-395:1:exon

JMUB4039_RS13010
type: Gene
subclass of: SO_0000704
RO_0002162: 109328
locus tag: JMUB4039_RS13010
old locus tag: JMUB3870_p2002
so part of: sequence
location: 1379..1720
location: region:1379-1720:1
so has part: feature:1379-1720:1:exon
subclass of: SO_0000010

position:1379:1
position: 1379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1720:1
position: 1720
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1379-1720:1:exon

JMUB4039_RS13010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109328
locus tag: JMUB4039_RS13010
old locus tag: JMUB3870_p2002
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNKTLNKRVVIANIRNSLKRFYANEGSQSYEELKEGMKDVYTIQGNLDDEMKKIEERIKSARENLVKIKADKENFDTIQKQFEYISKAFKEESNNEDNGINAESNNEDNGNKF
SIO_010081: JMUB4039_RS13010
subclass of: SO_0000673
so part of: JMUB4039_RS13010
location: 1379..1720
location: region:1379-1720:1
so has part: feature:1379-1720:1:exon

WP_155283288.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1379-1720:1:exon

JMUB4039_RS13015
type: Gene
subclass of: SO_0000704
RO_0002162: 109328
locus tag: JMUB4039_RS13015
old locus tag: JMUB3870_p2003
so part of: sequence
location: 1815..4010
location: region:1815-4010:1
so has part: feature:1815-4010:1:exon
subclass of: SO_0000010

position:1815:1
position: 1815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4010:1
position: 4010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1815-4010:1:exon

JMUB4039_RS13015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109328
locus tag: JMUB4039_RS13015
old locus tag: JMUB3870_p2003
inference: COORDINATES: protein motif:HMM:NF013258.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid recombination protein
translation: MVHGLVNIKTYSRNGTRLKKLEEHLKRMHNDYKNKNIDKSRTTDNVILNKSDDTYIRRVDKVIEENNLKLNKDTGVVLAAVIKLNATDSEDLNDFTKDDYINVFKNQQEHFIRDYGITEDSILDSVIHFDESEPHLHLTFIPKTSVVDKEKSDKELESYLQKECSKKARQELKKEVDPKEFDKLPPTREFLKMYHKGDTSIFTEDNKDILILMGEKYREWREKAENNGWGKSPKRNAGKITISKSELGLGGQSDFKKLQDRAFEWTKDSLKKIDKGHIHIARKFYDNVKYEKDIEIFKDIQRVPVNPAGKDIENIKSISSIESSYEIKKNFTGAYNRESVDNAMQDMKSNIEWLKKTGIDAINDKINLESRLRHTYEEYRNLEKRLSEVESDNRNLTGRSERFKKIIDSNDNFFKSLEDNNQIRKEYEIKEYSLKKREEQVNLKESAVNEKYNLVTAKEDKANELISKYNSKLKDFETEINSRVTEKYNSQFYRLERFLDNNNFIDALGTFDNSLVTSKIKEVNQRYLIKQNKLNSMDSEISEKSDKLAGINETIGKRLETLEKHNKAIDNNKNLVASQKKEYDENIIKINEQNRIINENRNQLERVKRLDSEIKEKEKILKELEMKSLENERLQSKNDELKKSLSKLEGLKRLESYFYVRAEEDISKYLINKKGYNEDKAKDVARNVIDADFGLDLVMAMEEYAYTGELDIKALNGFRNDVKEFDYMNKW
SIO_010081: JMUB4039_RS13015
subclass of: SO_0000673
so part of: JMUB4039_RS13015
location: 1815..4010
location: region:1815-4010:1
so has part: feature:1815-4010:1:exon

WP_155283289.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1815-4010:1:exon

JMUB4039_RS13020
type: Gene
subclass of: SO_0000704
RO_0002162: 109328
locus tag: JMUB4039_RS13020
old locus tag: JMUB3870_p2004
so part of: sequence
location: 4992..5288
location: region:4992-5288:1
so has part: feature:4992-5288:1:exon
subclass of: SO_0000010

position:4992:1
position: 4992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5288:1
position: 5288
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4992-5288:1:exon

JMUB4039_RS13020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109328
locus tag: JMUB4039_RS13020
old locus tag: JMUB3870_p2004
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQEKVDKENVKLSRIWGQQAYEEYFRRHAVKDLAEFYQNKRGFGYDEAEDRATDLIERNGRDWDFVISVMNDTITDEYVDELETSPSSYGHFDDEIGL
SIO_010081: JMUB4039_RS13020
subclass of: SO_0000673
so part of: JMUB4039_RS13020
location: 4992..5288
location: region:4992-5288:1
so has part: feature:4992-5288:1:exon

WP_155283290.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4992-5288:1:exon

JMUB4039_RS13025
type: Gene
subclass of: SO_0000704
RO_0002162: 109328
locus tag: JMUB4039_RS13025
old locus tag: JMUB3870_p2005
so part of: sequence
location: 6268..6519
location: region:6268-6519:1
so has part: feature:6268-6519:1:exon
subclass of: SO_0000010

position:6268:1
position: 6268
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6519:1
position: 6519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6268-6519:1:exon

JMUB4039_RS13025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109328
locus tag: JMUB4039_RS13025
old locus tag: JMUB3870_p2005
inference: COORDINATES: protein motif:HMM:NF019884.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HTH domain-containing protein
translation: MWKIIKGDKYNIERLEKIRKVMDEMYSNNEYIGIPVIAKDLNVSGQTVRKYIAGLQKDKDVERKLRMFIKRMYKKNQFYNDIR
SIO_010081: JMUB4039_RS13025
subclass of: SO_0000673
so part of: JMUB4039_RS13025
location: 6268..6519
location: region:6268-6519:1
so has part: feature:6268-6519:1:exon

WP_155283291.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6268-6519:1:exon

JMUB4039_RS13030
type: Gene
subclass of: SO_0000704
RO_0002162: 109328
locus tag: JMUB4039_RS13030
old locus tag: JMUB3870_p2006
so part of: sequence
location: 6685..9264
location: region:6685-9264:1
so has part: feature:6685-9264:1:exon
subclass of: SO_0000010

position:6685:1
position: 6685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9264:1
position: 9264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6685-9264:1:exon

JMUB4039_RS13030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109328
locus tag: JMUB4039_RS13030
old locus tag: JMUB3870_p2006
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKQFKVIDNEDDFNKLLDDLGTRSVRHLYEKSQYEMYLDGILENIKAMGDNIIMKMCIDKIINNPACELKTFYYNHNYICKQDLILKHFITLVYRNNDIEKVYGIDKDDSKYYYNFERGIIDIYYDTMFKYEENLLSNASDYDKKIIDKLYSELKYGDESVTKIALFIQLYIQNLIHINYIKNGDMDNGIDTLNILHFNNQGELEKYPSKVNSCLAIPDIVDIINKYPIERGELDKCIFNFNRLEKSINVYSVMTRVNGVIINTLKKEGLILTKPLLTKLFLFYIKNIGELGQAFIHSNADSKKESYNNNMLYVYSNINKCYRYLDVEDKLKELVVKLMSIIPFANLEAKKDDEFYYNCTKSIATIVEKDLRSKHLSYKLRDKLNYTSFIVDNGTVVMNKLTGEFIFCENLFSERIMCFNKFRGNFDKDFFVSHYDRLDNPLLKYTKAKIKNGLNEDGTVNKDVYGLLTASVLNLFQPDVETHNAVVLLGQHGTGKTLLINAIKRLDSLQINANFSREVGITEYMNAFLSRDLEKYHRTFKSEFSVKEYSDNSTIKVVLERGSILINQKFRDAVTVDINSKPIYTGEEFMRINVDGGLKDRFVLFEMRDKSKDTFFDIEGVDDIEDFLEYKVTHTLCGFYDGFMFQLDNKVFNSEGRVYSRLFMKYNPNTYNSFIERVSHIGGIDLILDIDENGILNQADLKNLVKICDECGYDTDIKKVARQTLSKNLNKLRDYNSQSRIFNGIDFKNAKESTLKKHNTTFKRQPYSLGIKFRDSVLDEIMSRLVNDKQRYKNQIKELNDIISRHNSYTKDDLRYIAKKYINDVTIKDLDNDTIKDEPKSDIENTISEIRSIGLRKA
SIO_010081: JMUB4039_RS13030
subclass of: SO_0000673
so part of: JMUB4039_RS13030
location: 6685..9264
location: region:6685-9264:1
so has part: feature:6685-9264:1:exon

WP_155283292.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6685-9264:1:exon

JMUB4039_RS13035
type: Gene
subclass of: SO_0000704
RO_0002162: 109328
locus tag: JMUB4039_RS13035
old locus tag: JMUB3870_p2007
so part of: sequence
location: 9382..10419
location: region:9382-10419:1
so has part: feature:9382-10419:1:exon
subclass of: SO_0000010

position:9382:1
position: 9382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10419:1
position: 10419
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9382-10419:1:exon

JMUB4039_RS13035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109328
locus tag: JMUB4039_RS13035
old locus tag: JMUB3870_p2007
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFKYNGVDRTKDTLNLLLEIMGHNERTDTFSLDCHMSFATKSIMESKADSDINVMAIPKLDSQRNLARIVEVAYGNRYAILYYPAGDSKSATTRNIMIDIDKVDFDRYDSLINELDRRDILRYTNICTSGGGLHLYIITENDITADEFEKVKEVFAGICERIGLGIDTSIKINSRMRCPFSLNTKYADEDRVVLCIQRAESKIGYTALQRLTKDACNISEGKPAFEVKQEPYGAYMKSNTLRTHWTNVLEKIIERHNGNRNTGIFNTFLFLIHNGIITNTLEFCQYIEKFKSDTAFKIYSKKDGQFDTSEITGIARNIYRMKKGELEHVDLSQIESVPSFIERGE
SIO_010081: JMUB4039_RS13035
subclass of: SO_0000673
so part of: JMUB4039_RS13035
location: 9382..10419
location: region:9382-10419:1
so has part: feature:9382-10419:1:exon

WP_155283293.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9382-10419:1:exon

JMUB4039_RS13040
type: Gene
subclass of: SO_0000704
RO_0002162: 109328
locus tag: JMUB4039_RS13040
old locus tag: JMUB3870_p2008
so part of: sequence
location: 10419..12482
location: region:10419-12482:1
so has part: feature:10419-12482:1:exon
subclass of: SO_0000010

position:12482:1
position: 12482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10419-12482:1:exon

JMUB4039_RS13040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109328
locus tag: JMUB4039_RS13040
old locus tag: JMUB3870_p2008
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNTKYDNFKFRNAYVGDVEVYRDYFLLVLADVNKNLENGDVTEDTFDVIMIDSRQQGFESIIRNLLNDSLFIGFNNKAYDNKILRYIAGTNAQQTEVKTCNLSELKEYSDSIIENRELSNYNKMFFYSLDVRDECRINANISLKDVEYHFNLDVITEDDSFDIEVSHNEEKLDEIRKYCKHDVFTTYLIVRESLSNRKGLATFENKLKSADIMINQMRKRGERVENDGLKRAVLSKPATIAAKMFERKEDGEYQRWYEINDKPEITEPRTEIARRIYERRKADIHAPVENFMLGDVLINFGSGGLHTVSTEDSSLELYRDVYNFDVASFYPSFIEKFDRIANFDIELFRYLKAERLRLKRMKDDVDAQARQNAYKLMINSTTGKYNESYWNNGTSDNPIYNPHVYYSMTTSCQLMLLDLAESLFEYVNIVQLNTDGIAFTLKGKGDIEKARGICRKWEQYFGYELEESHFDLFVQRSVNDYIGIERTGDKVKAKSKGSSFAELKGISASADMISNVLANVFKRYDCDSLDYGKLSDLIDSTVDGFVESKDHNALQINIKAVSTVKDKNIYDRHGNVTGTRTKGMRAFIVNDGDDTVRIKANQYTLNPNYIHTVKATGRQRLRNVKLGDLEGCVPLMIHNRRVKDSENIDYNTNMYKFLCKRELLKMMNIKALVTEKDGAWEIEPYYD
SIO_010081: JMUB4039_RS13040
subclass of: SO_0000673
so part of: JMUB4039_RS13040
location: 10419..12482
location: region:10419-12482:1
so has part: feature:10419-12482:1:exon

WP_155283294.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10419-12482:1:exon

JMUB4039_RS13045
type: Gene
subclass of: SO_0000704
RO_0002162: 109328
locus tag: JMUB4039_RS13045
old locus tag: JMUB3870_p2009
so part of: sequence
location: 12619..13002
location: region:12619-13002:1
so has part: feature:12619-13002:1:exon
subclass of: SO_0000010

position:12619:1
position: 12619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13002:1
position: 13002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12619-13002:1:exon

JMUB4039_RS13045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109328
locus tag: JMUB4039_RS13045
old locus tag: JMUB3870_p2009
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKHKIIKEFIGSINGYIIDDENLYDSLIYFINYLEDIFKLEVISSDIIEYLDNCYDTYRDVIMDEKDSDILDVNWIITKFLMGITKNTGVKFETDIYENTIYKKMASIFKEDELAGYIDIIKGVMKK
SIO_010081: JMUB4039_RS13045
subclass of: SO_0000673
so part of: JMUB4039_RS13045
location: 12619..13002
location: region:12619-13002:1
so has part: feature:12619-13002:1:exon

WP_155283295.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12619-13002:1:exon

JMUB4039_RS13050
type: Gene
subclass of: SO_0000704
RO_0002162: 109328
locus tag: JMUB4039_RS13050
old locus tag: JMUB3870_p2010
so part of: sequence
location: 12999..13607
location: region:12999-13607:1
so has part: feature:12999-13607:1:exon
subclass of: SO_0000010

position:12999:1
position: 12999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13607:1
position: 13607
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12999-13607:1:exon

JMUB4039_RS13050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109328
locus tag: JMUB4039_RS13050
old locus tag: JMUB3870_p2010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018498937.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MRFGYARVSTAKQDLTRQITALENVNCNEIYSDVQSGKNMERAELKKLLSKIRENDTFIVTDIDRLGRNFTEVTELYTKLKDMKVNIIVINQELLNHRVDDKKDEIVNVVVIPLLIYLAERERTTLIERINDGIRNMPVDESGRKFSRKTGNSVGRPAKVINLSKEDSEMLKRVRNKELSVNGFCRYMGISRQSYYKYYKYL
SIO_010081: JMUB4039_RS13050
subclass of: SO_0000673
so part of: JMUB4039_RS13050
location: 12999..13607
location: region:12999-13607:1
so has part: feature:12999-13607:1:exon

WP_155283296.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12999-13607:1:exon

JMUB4039_RS13055
type: Gene
subclass of: SO_0000704
RO_0002162: 109328
locus tag: JMUB4039_RS13055
old locus tag: JMUB3870_p2011
so part of: sequence
location: complement(13628..13771)
location: region:13628-13771:-1
so has part: feature:13628-13771:-1:exon
subclass of: SO_0000010

position:13628:-1
position: 13628
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13771:-1
position: 13771
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13628-13771:-1:exon

JMUB4039_RS13055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109328
locus tag: JMUB4039_RS13055
old locus tag: JMUB3870_p2011
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKLNHIVELNREEQAREEQEKLENQVTVTREWDYHKADYVEKTHYKC
SIO_010081: JMUB4039_RS13055
subclass of: SO_0000673
so part of: JMUB4039_RS13055
location: complement(13628..13771)
location: region:13628-13771:-1
so has part: feature:13628-13771:-1:exon

WP_155283297.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13628-13771:-1:exon

JMUB4039_RS13060
type: Gene
subclass of: SO_0000704
RO_0002162: 109328
locus tag: JMUB4039_RS13060
old locus tag: JMUB3870_p2012
so part of: sequence
location: complement(13880..14512)
location: region:13880-14512:-1
so has part: feature:13880-14512:-1:exon
subclass of: SO_0000010

position:13880:-1
position: 13880
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14512:-1
position: 14512
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13880-14512:-1:exon

JMUB4039_RS13060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109328
locus tag: JMUB4039_RS13060
old locus tag: JMUB3870_p2012
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006806170.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSKNFDLTTSRINSKKHYKIAKTESIYDINYNELGISGAEKEQLIKYESDIKYHREKTMIHILNYSKAIYEANKIFSNNKNGTFGKWLEMLGIDKDSANVAIRKYSLYLEYENKGVAKAENILTLPNRAVKTLTGHKKENFNDNEIIEVITSDNPSSKLKEIVEYKDLEKMSHVEERKVYLLRERTRKLHLIEKIRKEVLEIEKELNSLT
SIO_010081: JMUB4039_RS13060
subclass of: SO_0000673
so part of: JMUB4039_RS13060
location: complement(13880..14512)
location: region:13880-14512:-1
so has part: feature:13880-14512:-1:exon

WP_155283298.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13880-14512:-1:exon

JMUB4039_RS13065
type: Gene
subclass of: SO_0000704
RO_0002162: 109328
locus tag: JMUB4039_RS13065
old locus tag: JMUB3870_p2013
so part of: sequence
location: complement(14509..15249)
location: region:14509-15249:-1
so has part: feature:14509-15249:-1:exon
subclass of: SO_0000010

position:14509:-1
position: 14509
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15249:-1
position: 15249
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14509-15249:-1:exon

JMUB4039_RS13065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109328
locus tag: JMUB4039_RS13065
old locus tag: JMUB3870_p2013
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018450716.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MKKIAIVNNKGGCGKTTTVFNLAYYFAKKKLKTLVIDTDPQLNLTSIIGLNVNQLQSSLGDYLLNRLNTFKPEVINENFHLLSAGLDAESDMEMLKSQGVYYYQRLNDFLETLSNYYDVVIIDTAPAFNAYTTSSIYAASVYSIVLPGIIELYGLDATMEYTNELGKDISGVILTRQEKTSLSEQIYDQLKTDYNDYLLKTIIRKNVALSECIITHQSIFDYSKRSNGANDYKKLAEEIMKREGIT
SIO_010081: JMUB4039_RS13065
subclass of: SO_0000673
so part of: JMUB4039_RS13065
location: complement(14509..15249)
location: region:14509-15249:-1
so has part: feature:14509-15249:-1:exon

WP_155283299.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14509-15249:-1:exon