Leptotrichia trevisanii strain JMUB3870 plasmid pJMUB3870-1, complete sequence.
type: Entry
definition: Leptotrichia trevisanii strain JMUB3870 plasmid pJMUB3870-1, complete sequence.
sequence version: NZ_AP019832.1
sequence date: 2022-12-27
sequence: sequence
division: CON
label: NZ_AP019832.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMD00156217
keyword: RefSeq
source: Leptotrichia trevisanii
organism: Leptotrichia trevisanii
taxonomy: Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Leptotrichia.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nAP019832.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 1.8; Circlator v. 1.5.5;\n nanopolish v. 0.10.2; Pilon v. 1.22; CLC\n Genomics Workbench v. 9.5.3\nGenome Coverage :: 70X\nSequencing Technology :: MinION; MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/27/2022 02:57:36\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,636\nCDSs (total) :: 2,571\nGenes (coding) :: 2,539\nCDSs (with protein) :: 2,539\nGenes (RNA) :: 65\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 4\nPseudo Genes (total) :: 32\nCDSs (without protein) :: 32\nPseudo Genes (ambiguous residues) :: 0 of 32\nPseudo Genes (frameshifted) :: 14 of 32\nPseudo Genes (incomplete) :: 16 of 32\nPseudo Genes (internal stop) :: 6 of 32\nPseudo Genes (multiple problems) :: 4 of 32\nCRISPR Arrays :: 4\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 25939
topology: circular
so has quality: SO_0000988
location: 1..25939
location: region:1-25939:1
RO_0002162: 109328

NZ_AP019832
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMD00156217
type: BioSample
SIO_000068: biosample

1
title: Complete Genome Sequence of Leptotrichia trevisanii Strain JMUB3870
author: Watanabe, S.
author: Cui, L.
journal: Unpublished

2
title: Direct Submission
author: Watanabe, S.
author: Cui, L.
journal: Submitted (23-JUL-2019) Contact:Shinya Watanabe Jichi Medical University, Bacteriology; Yakushiji 3311-1, Shimotsuke, Tochigi 329-0498, Japan URL :http://www.jichi.ac.jp/bacteriology/

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25939:1
position: 25939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-25939:1:source
so part of: sequence
organism: Leptotrichia trevisanii
mol type: genomic DNA
strain: JMUB3870
isolation source: blood
host: Homo sapiens
plasmid: pJMUB3870-1
country: Japan
collection date: 2014

109328
type: Taxonomy
SIO_000068: taxonomy

JMUB4039_RS12910
type: Gene
subclass of: SO_0000704
RO_0002162: 109328
locus tag: JMUB4039_RS12910
old locus tag: JMUB3870_p1001
so part of: sequence
location: 355..1431
location: region:355-1431:1
so has part: feature:355-1431:1:exon
subclass of: SO_0000010

position:355:1
position: 355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1431:1
position: 1431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:355-1431:1:exon

JMUB4039_RS12910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109328
locus tag: JMUB4039_RS12910
old locus tag: JMUB3870_p1001
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018450717.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MGNEIVKYNNDFNNQALRNFSSEELNLLVTFFHKLKEKGTDVLEYSFYELKKLIMLEKNMTVKEFTNTIMNVNKKLLSLNYTYRENNTIVQMAIFKTFKINLDEQILMISLNEDFRFLLNDFNKEWTRFELEEFVNLKSSYVKEFYRRMKQFRKTGFWRCSIDEFRYLMDIPENYKITNIDTRVLKPIMRELGEKYNLKIEKKYGFSGGRGRSRVTGFEFKFSTEKKVDIVAGNEEEVNNNPIPLSKPRKPKKKEETRTVLERKSRIIEAIPKQEKEKTLREKIRDKINENTETIENLEAIYTGLKDKIQFKKLTEKYPQKIEEIKNMNMQLKAIYNIDENDFTQEIIELAEDLIIKK
SIO_010081: JMUB4039_RS12910
subclass of: SO_0000673
so part of: JMUB4039_RS12910
location: 355..1431
location: region:355-1431:1
so has part: feature:355-1431:1:exon

WP_026748916.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:355-1431:1:exon

JMUB4039_RS12915
type: Gene
subclass of: SO_0000704
RO_0002162: 109328
locus tag: JMUB4039_RS12915
old locus tag: JMUB3870_p1002
so part of: sequence
location: 1551..2291
location: region:1551-2291:1
so has part: feature:1551-2291:1:exon
subclass of: SO_0000010

position:1551:1
position: 1551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2291:1
position: 2291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1551-2291:1:exon

JMUB4039_RS12915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109328
locus tag: JMUB4039_RS12915
old locus tag: JMUB3870_p1002
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018450716.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MKKIAIVNNKGGCGKTTTVFNLAHYFAKQGLKTLAIDTDPQLNLSTNFGVNVNELNSSLGDYLLDKVKKFKPEILNENLHLISAGSEAERDMEELKNQGPYYYQLLDRFLENLSENYDVIIFDTAPAFNAYTTSAIYTSSVYPVILPGINELLGLNATINFTQGLGKDISGIILIRKEKTALSDQIQEQLQEEYKDYLLKNIIRKNVALSECIVTHQSIFDYSKNANGAKDYSNLAEEIMKKEGIR
SIO_010081: JMUB4039_RS12915
subclass of: SO_0000673
so part of: JMUB4039_RS12915
location: 1551..2291
location: region:1551-2291:1
so has part: feature:1551-2291:1:exon

WP_026748915.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1551-2291:1:exon

JMUB4039_RS12920
type: Gene
subclass of: SO_0000704
RO_0002162: 109328
locus tag: JMUB4039_RS12920
old locus tag: JMUB3870_p1003
so part of: sequence
location: 2288..2920
location: region:2288-2920:1
so has part: feature:2288-2920:1:exon
subclass of: SO_0000010

position:2288:1
position: 2288
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2920:1
position: 2920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2288-2920:1:exon

JMUB4039_RS12920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109328
locus tag: JMUB4039_RS12920
old locus tag: JMUB3870_p1003
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006806170.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSKKFNLDLSKINSKKVPAVAKVESIYDINYEELEISGIEKEKLIKYENDITFHKEKSMEHIFKYSKAIFEANQIFSNKGNGFFGKWIEKLGVDRDSANVAIRKYSLYLKYQTKGLEEPEKVLALSNRTVKTLTGQKKDDFKETEIIEVITSDNPTSKLKEIEEQKEAIKLSDVEEKRIFLTREKVKRQHLIKKIREEIRDIEEKIKSLN
SIO_010081: JMUB4039_RS12920
subclass of: SO_0000673
so part of: JMUB4039_RS12920
location: 2288..2920
location: region:2288-2920:1
so has part: feature:2288-2920:1:exon

WP_026748914.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2288-2920:1:exon

JMUB4039_RS12930
type: Gene
subclass of: SO_0000704
RO_0002162: 109328
locus tag: JMUB4039_RS12930
old locus tag: JMUB3870_p1004
so part of: sequence
location: 3385..5505
location: region:3385-5505:1
so has part: feature:3385-5505:1:exon
subclass of: SO_0000010

position:3385:1
position: 3385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5505:1
position: 5505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3385-5505:1:exon

JMUB4039_RS12930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109328
locus tag: JMUB4039_RS12930
old locus tag: JMUB3870_p1004
inference: COORDINATES: protein motif:HMM:NF013258.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid recombination protein
translation: MAEISAINNFKKYNSGSGRSSINNVVREAFRELEKFKNNVNQELTQFNKILVKDLSVLERQYYDTEVDSRSRDVVSVVSQVQTGNFEAKNGVDLTYMLSLEKWEQYYKENLEFLNKKFGKNARCVYAVIHFDESTPHMQSMWTFSEENNQKDEYTVSDVNTAKVKSALTSAFLRRNKELGLIAGTDEYKKAFEEFKVQEKPKIIERQLAKMNKNKSDKKFKFESGTSPFTKDFYRTFNKEFVNDFMVKNPSINELKNKVKVFSNEGAEVVVRRTEKVNSSEDLDRTKFAMEKEKKDLENKIGSNDYSKNEFMKYTEILSKREIIDRKKKISKEDFLNEFKNYEIDFKVRKSNKEITDFKRIFNIKKIIKDKLNQRQNNKNFKKNLKKEIKLFDEIFKNVDFEAINKKIEDYSKGEKIEELIKNRENLYFEIKTLETEASNLKSSINFLEKEQNSKNNEIHNLDEQIWEKKMEAEKPYVVSERRKQELINEALNEARKRGDTLMRNIKKDVEKEEAKNNAIKQDILDKRLQMERELQEINNKRRQLNDSYADLEEKKRRRKAELEKLAQPIIQKEVDDLVREHLRYYEVTDKDILNFKANNKSEYDKLFGEAEAGAYEKIKGAYIRRKHDAGNKFIKQMTNILHEDSNGKFSLLEIEKTVIAAIENVPDSTYSWWNDFKNNLNIELENTVKDKNVVRNRSSSQYDRS
SIO_010081: JMUB4039_RS12930
subclass of: SO_0000673
so part of: JMUB4039_RS12930
location: 3385..5505
location: region:3385-5505:1
so has part: feature:3385-5505:1:exon

WP_155283280.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3385-5505:1:exon

JMUB4039_RS12935
type: Gene
subclass of: SO_0000704
RO_0002162: 109328
locus tag: JMUB4039_RS12935
old locus tag: JMUB3870_p1005
so part of: sequence
location: complement(5576..5899)
location: region:5576-5899:-1
so has part: feature:5576-5899:-1:exon
subclass of: SO_0000010

position:5576:-1
position: 5576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5899:-1
position: 5899
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5576-5899:-1:exon

JMUB4039_RS12935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109328
locus tag: JMUB4039_RS12935
old locus tag: JMUB3870_p1005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018450744.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MEKKFYEVKFTESAEKDLKKLNKSNKAIAKLLKKWISENLIGTQNPKQRGKALTGNLKGLWRYRVGSYRIVAEIKNDILLILIIEISDRKETYKDKKRKTYKDRKIK
SIO_010081: JMUB4039_RS12935
subclass of: SO_0000673
so part of: JMUB4039_RS12935
location: complement(5576..5899)
location: region:5576-5899:-1
so has part: feature:5576-5899:-1:exon

WP_155283281.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5576-5899:-1:exon

JMUB4039_RS12940
type: Gene
subclass of: SO_0000704
RO_0002162: 109328
locus tag: JMUB4039_RS12940
old locus tag: JMUB3870_p1006
so part of: sequence
location: complement(5899..6126)
location: region:5899-6126:-1
so has part: feature:5899-6126:-1:exon
subclass of: SO_0000010

position:6126:-1
position: 6126
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5899-6126:-1:exon

JMUB4039_RS12940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109328
locus tag: JMUB4039_RS12940
old locus tag: JMUB3870_p1006
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012806214.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF6290 family protein
translation: MPTLSLRMEKEDLEFLKEYSNINNLNMSSFVRNLILDKIYDEITEEDEKRILKRWEKSKSEKTSDAEDVFKRLGL
SIO_010081: JMUB4039_RS12940
subclass of: SO_0000673
so part of: JMUB4039_RS12940
location: complement(5899..6126)
location: region:5899-6126:-1
so has part: feature:5899-6126:-1:exon

WP_018498936.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5899-6126:-1:exon

JMUB4039_RS12945
type: Gene
subclass of: SO_0000704
RO_0002162: 109328
locus tag: JMUB4039_RS12945
old locus tag: JMUB3870_p1007
so part of: sequence
location: 6505..7152
location: region:6505-7152:1
so has part: feature:6505-7152:1:exon
subclass of: SO_0000010

position:6505:1
position: 6505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7152:1
position: 7152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6505-7152:1:exon

JMUB4039_RS12945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109328
locus tag: JMUB4039_RS12945
old locus tag: JMUB3870_p1007
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005957372.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MRYGYARVSTREQDEARQIKALKNKGVQEIIIEKASGKNFIDRQEWQKLMAKVVVDDVIVVKSLDRLGRNNAEIKETFELLSKKQVYLEFIDNDILNTRKPITETDKLNQKLVQPIILHLLGYFAERERELIKERQTEAYAQLEVDSKGRKLSNKKINKDGSKKICGRPNKVENLTKKQKDIINRWILKAIKTSEAVQLTGLSRSTLFRIKKNVL
SIO_010081: JMUB4039_RS12945
subclass of: SO_0000673
so part of: JMUB4039_RS12945
location: 6505..7152
location: region:6505-7152:1
so has part: feature:6505-7152:1:exon

WP_018450730.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6505-7152:1:exon

JMUB4039_RS12950
type: Gene
subclass of: SO_0000704
RO_0002162: 109328
locus tag: JMUB4039_RS12950
old locus tag: JMUB3870_p1008
so part of: sequence
location: 7280..7783
location: region:7280-7783:1
so has part: feature:7280-7783:1:exon
subclass of: SO_0000010

position:7280:1
position: 7280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7783:1
position: 7783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7280-7783:1:exon

JMUB4039_RS12950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109328
locus tag: JMUB4039_RS12950
old locus tag: JMUB3870_p1008
EC number: 3.1.-.-
inference: COORDINATES: protein motif:HMM:NF014505.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system PemK/MazF family toxin
translation: MEKFGKKFKREKRKIKKFLNARDFELLLKYFINLIKNNLRILKNPAIETTANARRSYVYSVDFGFTTGGVLRDRHYCVVLYSQGKTAIVVPLTSKNNTNIFNVELGIIQNLSRRNIVSYALVNQITTVSRAMLMQPRRNRNERVKLNSEQMNKLEQGLEKILFKNRY
SIO_010081: JMUB4039_RS12950
subclass of: SO_0000673
so part of: JMUB4039_RS12950
location: 7280..7783
location: region:7280-7783:1
so has part: feature:7280-7783:1:exon

WP_155283282.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7280-7783:1:exon

JMUB4039_RS12955
type: Gene
subclass of: SO_0000704
RO_0002162: 109328
locus tag: JMUB4039_RS12955
old locus tag: JMUB3870_p1009
so part of: sequence
location: 7986..8156
location: region:7986-8156:1
so has part: feature:7986-8156:1:exon
subclass of: SO_0000010

position:7986:1
position: 7986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8156:1
position: 8156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7986-8156:1:exon

JMUB4039_RS12955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109328
locus tag: JMUB4039_RS12955
old locus tag: JMUB3870_p1009
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018498938.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTDEFFEDENVDNEESNLEYDRDVFDIEIEFDDKVIKRIERTETAREFEKLIESEE
SIO_010081: JMUB4039_RS12955
subclass of: SO_0000673
so part of: JMUB4039_RS12955
location: 7986..8156
location: region:7986-8156:1
so has part: feature:7986-8156:1:exon

WP_018450728.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7986-8156:1:exon

JMUB4039_RS12960
type: Gene
subclass of: SO_0000704
RO_0002162: 109328
locus tag: JMUB4039_RS12960
old locus tag: JMUB3870_p1010
so part of: sequence
location: 9382..9597
location: region:9382-9597:1
so has part: feature:9382-9597:1:exon
subclass of: SO_0000010

position:9382:1
position: 9382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9597:1
position: 9597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9382-9597:1:exon

JMUB4039_RS12960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109328
locus tag: JMUB4039_RS12960
old locus tag: JMUB3870_p1010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006806162.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF6290 family protein
translation: MASISLKVSDMEKKFLQSMAQFEGVTLSELIKSKVFDSLEDEYDAKIADLRLSEYESYLKNGGKVLKWEEL
SIO_010081: JMUB4039_RS12960
subclass of: SO_0000673
so part of: JMUB4039_RS12960
location: 9382..9597
location: region:9382-9597:1
so has part: feature:9382-9597:1:exon

WP_155283283.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9382-9597:1:exon

JMUB4039_RS12965
type: Gene
subclass of: SO_0000704
RO_0002162: 109328
locus tag: JMUB4039_RS12965
old locus tag: JMUB3870_p1011
so part of: sequence
location: 9582..9854
location: region:9582-9854:1
so has part: feature:9582-9854:1:exon
subclass of: SO_0000010

position:9582:1
position: 9582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9854:1
position: 9854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9582-9854:1:exon

JMUB4039_RS12965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109328
locus tag: JMUB4039_RS12965
old locus tag: JMUB3870_p1011
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018499565.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MGRTVKYKLIPTPHFAKDFSKLDEFVKKRIKIYLENIAEDPRSKGKMLKANRKGQWRYRIGNYRVIVNIQDENLVVLALEVGHRKNIYNS
SIO_010081: JMUB4039_RS12965
subclass of: SO_0000673
so part of: JMUB4039_RS12965
location: 9582..9854
location: region:9582-9854:1
so has part: feature:9582-9854:1:exon

WP_155283284.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9582-9854:1:exon

JMUB4039_RS12970
type: Gene
subclass of: SO_0000704
RO_0002162: 109328
locus tag: JMUB4039_RS12970
old locus tag: JMUB3870_p1012
so part of: sequence
location: complement(9988..10914)
location: region:9988-10914:-1
so has part: feature:9988-10914:-1:exon
subclass of: SO_0000010

position:9988:-1
position: 9988
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10914:-1
position: 10914
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9988-10914:-1:exon

JMUB4039_RS12970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109328
locus tag: JMUB4039_RS12970
old locus tag: JMUB3870_p1012
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018450725.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MNEIVKYRNELNKVALRNFKSKELDLFIAIISRMRDKEEEVTFSFDYLKNLIQYETSNSIETFHKELKSMYNKLIKCVYGWETEDEIVRFVLFTEYTIDKKNKTVKVGVNKKYSWVLNAITDGLFTRFELEEFVRLKSSYTKEFYRRMKQFRSTGFWSVNLDEFKRLMDIPVNYRMCDIDVKVLKPIQKELKEKYGLKIQKTYNTKGRGRPAVSGFIFTFLKEEPQSRKEIKEEKKEIKTPADFFIHRKVRMMDGVTGIFNTLTIKSINEQKNGMVVVKIQNVDDFYEQDFAFNSMEHFENWFRKYVI
SIO_010081: JMUB4039_RS12970
subclass of: SO_0000673
so part of: JMUB4039_RS12970
location: complement(9988..10914)
location: region:9988-10914:-1
so has part: feature:9988-10914:-1:exon

WP_155283285.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9988-10914:-1:exon

JMUB4039_RS12975
type: Gene
subclass of: SO_0000704
RO_0002162: 109328
locus tag: JMUB4039_RS12975
old locus tag: JMUB3870_p1013
so part of: sequence
location: 11547..11888
location: region:11547-11888:1
so has part: feature:11547-11888:1:exon
subclass of: SO_0000010

position:11547:1
position: 11547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11888:1
position: 11888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11547-11888:1:exon

JMUB4039_RS12975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109328
locus tag: JMUB4039_RS12975
old locus tag: JMUB3870_p1013
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEEKSNLKSKKFNQKSYLYGMYKNKFYPIINFEELLNFEEELTLKKQYFEFEKQFKLEEKNIKTFSSGKENPVTKIMESATRLSGIQKEVKDYFLSKEFNEKVKDLISKFLER
SIO_010081: JMUB4039_RS12975
subclass of: SO_0000673
so part of: JMUB4039_RS12975
location: 11547..11888
location: region:11547-11888:1
so has part: feature:11547-11888:1:exon

WP_026748886.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11547-11888:1:exon

JMUB4039_RS12980
type: Gene
subclass of: SO_0000704
RO_0002162: 109328
locus tag: JMUB4039_RS12980
old locus tag: JMUB3870_p1014
so part of: sequence
location: complement(12107..12280)
location: region:12107-12280:-1
so has part: feature:12107-12280:-1:exon
subclass of: SO_0000010

position:12107:-1
position: 12107
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12280:-1
position: 12280
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12107-12280:-1:exon

JMUB4039_RS12980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109328
locus tag: JMUB4039_RS12980
old locus tag: JMUB3870_p1014
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEMLPLYQLIFSQPGLPLLVKDKWGLTVIEFARRFNRPIAVKMMEDYVKKYNLKEDS
SIO_010081: JMUB4039_RS12980
subclass of: SO_0000673
so part of: JMUB4039_RS12980
location: complement(12107..12280)
location: region:12107-12280:-1
so has part: feature:12107-12280:-1:exon

WP_232056222.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12107-12280:-1:exon

JMUB4039_RS12985
type: Gene
subclass of: SO_0000704
RO_0002162: 109328
locus tag: JMUB4039_RS12985
old locus tag: JMUB3870_p1015
so part of: sequence
location: complement(12623..13705)
location: region:12623-13705:-1
so has part: feature:12623-13705:-1:exon
subclass of: SO_0000010

position:12623:-1
position: 12623
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13705:-1
position: 13705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12623-13705:-1:exon

JMUB4039_RS12985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109328
locus tag: JMUB4039_RS12985
old locus tag: JMUB3870_p1015
inference: COORDINATES: protein motif:HMM:NF025919.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SMI1/KNR4 family protein
translation: MNERFMDMLKEYLKKNERKAIGYSEEEITKIEKLYDIEVKGDFREFLKYAGRCDGDLLGDDPVILYRQTWSIQSYLRKNYFNFIDEDYTVLHGDLQKKPFIFSIEMETYYFYIRTADDDLKVYCFDENEEILKDTGMNFNEYMVDLVERYNPELKPTLDFSTVGELMVQCDTSEKRIIGLKEIREYVSSERKETSEIFILFEKYLEKSKKKFTGYNDDEIRGIEELYDIEVKGDFREYLSIAGKSLGGLLGKKEFLLYSDIGVRERILLQFSLEKELRENELYDIVDEKFFILDYKNNSEYIFITTKNNGKIYYYNKDRKILKEVENNFNDYIVKLIKKYNRSLVEIKNDITSGNILNII
SIO_010081: JMUB4039_RS12985
subclass of: SO_0000673
so part of: JMUB4039_RS12985
location: complement(12623..13705)
location: region:12623-13705:-1
so has part: feature:12623-13705:-1:exon

WP_051354435.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12623-13705:-1:exon

JMUB4039_RS12990
type: Gene
subclass of: SO_0000704
RO_0002162: 109328
locus tag: JMUB4039_RS12990
old locus tag: JMUB3870_p1016
so part of: sequence
location: complement(13721..23635)
location: region:13721-23635:-1
so has part: feature:13721-23635:-1:exon
subclass of: SO_0000010

position:13721:-1
position: 13721
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23635:-1
position: 23635
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13721-23635:-1:exon

JMUB4039_RS12990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109328
locus tag: JMUB4039_RS12990
old locus tag: JMUB3870_p1016
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006806157.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hemagglutination protein
translation: MRGKSKILRKLTAALLLNVFSFNILADGLQVDPNSRYNTSLDRAQNGVPVVNISTPNGRGVSINEFLEYNVGREGQVLNNADNIGRSHLAGIINANPNLGPNQAANLILLQVNGANRSQIEGYIEALSRQKVNVILSNENGIYLNGAGTINIKNFIPTTGRVKLKDGDVIGIDVEKGRVVIGANGFDATNTDYVNVIAKAMELQGNLVGNKVDVTLGENTVDSSGTVTSKNGINSVAIDASNLGSMYAGQIKIVSTDKGAGVNSSGLIYSRDTKLEITADGKINVAKIKGNGIEINGTEYAQSELASSDKGININASKIKLSGETQANGDINLNGNVENKSNIYTGGNLNTLDMINSGNINASGNITAKDFRNSLATVLSGGNFNVKNLDNSGNIQVSGITDINGKFDNTGALTSVKRISVLGNVASTGNILTNEDLTARNTVTSGTVAAKNLKVDNLTNDGKISANGNLLAKDIKNTGEILAVGKISGNSFVTSGKVQTNEALDINGFLDNIGTVGAAKDITVAGNVLNSGEILTNGDFTSKNMDTSGTVVSNNLRTGNLKNDGKIVANKDLTAKNVSSTGDITVVGKISADSLKSSGALRTNEDLSINGRFDNGGTVETSKNVIVSGDINNTGKILAGGNLSGKNTVSDGTVAAKNISVDDLKNDGKVTAGENITAKKVTNTGDIAAAGTVSSDDMKTSGTVKANKTITVAGKLENDGTIETAEDVKVSGNIRNTGRIASNGDLTGKDTVSSGTIASRNVKVDNLSNDGVIVANGNLNAKNVKNAKDITAVGTVSSDDLVTSGNVRANRKITVSGKLENSGAVETSKNISVAGNIKNDGRIAANDDLAGKNTENNGNIYVKNLEVNNLRNTGKVEGVNLKTDDIANSGDITAIGKISSGNIDNSGKLLANDTINAKNIKNINKVAAGKGITGERIDNSGTFATNGDIKAINSLVNSGTVDGKGIDVAGAEFTNSGKINGENIKANVVNARNDGFIYSGNDVDLTTNTLINTKEITAVNNINAANAAVTNNGKIASNNRVLLDNSAITNTGEILSGEVFMRNAQRFDNTGTIKGNNVELGINQDINLTGNLHGQQRLKISGNNITNNGNTTGTGLIEINSNDFTNNRELASDTVVVNGRGEVVNNSMITGNNGKVSGRNITNNDLIAFENYLEMNAQGKVQNNKGKAIYGGQTLIIKGNEIMNDEAEILGGNMDLNAAKITNNVATIQSTGDIVITSNDFQNIGRVTGLGNYEKYYETWDGRRLSEAEVLNGWIVNEPDFQHRSRDRGSVKRHQRSWLESMIAKHSGNSLLFSRYPDFARSKLGQKGITIYTNIPEVPGNTLTGKIDSRATTEYGKVLASGNITINSGNFKNRDSIISGGGLVNINATNFENSVTLGNAVQLKNGQEKLYLTYRHGSRRSSANGTYSRYLENGGIGYESGQPSIIEGAVVNVNAPNIIKNPIEAGNGKVLNNGGATGRALISSTSVGMNKGTSSANGQVQAAGNTLLSKVNSSFNGNSQVNGSTGLNNPINNTFDRAVQIAGNNSGIRDIKNTGRISVNPILSSAMFTANMNPSSKYLMETRSKYINLGRYLGSDYFTSRVGYSEVWDRTKRLGDAYYEDQLITRALAEKLGTAFINGKSNEELIQAMMDNAATEGARLGLTVGQELTQEQINNLNEDIVWYVTKNVNGVEVLTPQVYLSSKTRESISDDTRNRVGGINGTYVKTKDFVNDGTKWGNGGVTYVEANTVRNETTNNLLSEISGDKTYIRTVGNIENIGGRINGEEAVALISEKGNVINNTTKRTVGFNYGEYDKSQREEIASIGGITSKGTTFIKADSYNSVGGMLKTDHLALDVNSFNTSALSLSGQSTLGISGSNYSKYAETTHFGGGAVANSAEGRIGNLNLRGSSFIAEDTTGLAVGNVRAESVINTYDIESRQSNKSTFASSSSHVKSHQEENVASNLQLGKNAVITGNVEGIGSNIVLGENTFVGGKVTTDSRE…
SIO_010081: JMUB4039_RS12990
subclass of: SO_0000673
so part of: JMUB4039_RS12990
location: complement(13721..23635)
location: region:13721-23635:-1
so has part: feature:13721-23635:-1:exon

WP_232056220.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13721-23635:-1:exon

JMUB4039_RS12995
type: Gene
subclass of: SO_0000704
RO_0002162: 109328
locus tag: JMUB4039_RS12995
old locus tag: JMUB3870_p1017
so part of: sequence
location: complement(23779..25581)
location: region:23779-25581:-1
so has part: feature:23779-25581:-1:exon
subclass of: SO_0000010

position:23779:-1
position: 23779
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25581:-1
position: 25581
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23779-25581:-1:exon

JMUB4039_RS12995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 109328
locus tag: JMUB4039_RS12995
old locus tag: JMUB3870_p1017
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005910013.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ShlB/FhaC/HecB family hemolysin secretion/activation protein
translation: MKKIVSCCVFLLVNLAFPAPVNEANRIIDIQQRQLEQERIRQQQEKMQKEFENTKFDNPKPQIDKDIENSNLNSNKFLIKSVNIKDNDKLLSQRERNKIIGKYVYLELSSNDIRNLLTDLTNKLISKGYTTSTVNFDKNNDLTTGTLNLEIVAGRIEDIRINSGNGLDKYKEFFMFSKNKGKIFNIRDIDTATDNFNSINANNMTMEVLPGRKENYSRIEVKNRLKNKYTVGILANNYGDSKQNGIWRRGINLNIDSPLGIGDNFYFTYMTVPKKDPNRSWKKTVEQLQPGEILPIGPTGYDPLKGDTLPYKRRLDMFNFGYTMKFRTYTLKLNSSKSIQESSFYSANTVYDMYSGSHTLSADLEKILFRNQKSKVSLDLGIKRKHNQSYLEKSVLSDRKLAVGTLSLNATTSLFGGIFGSSFGYERGLKIFHAERDSGKIDTTPKAQFHKYSMNLSYYKPITNKLVYRANVNGSYSNDVLYGSERQTIGGVGSVGGYHTRESIQGDKAIEVSNELAYNIPVKKFAVVSPYVNYGYGAAKYNRDKSKYRTGYVTGMTAGIRFDTKIFDFDFGYARPMSHSDYLSPKKQEMYFSGSLKVSF
SIO_010081: JMUB4039_RS12995
subclass of: SO_0000673
so part of: JMUB4039_RS12995
location: complement(23779..25581)
location: region:23779-25581:-1
so has part: feature:23779-25581:-1:exon

WP_155283286.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23779-25581:-1:exon