Methylotuvimicrobium alcaliphilum 20Z plasmid MEALZ_p, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylotuvimicrobium.
Genome sequence of the haloalkaliphilic methanotrophic bacterium Methylomicrobium alcaliphilum 20Z
Submitted (14-OCT-2011) Genoscope - Centre National de Sequencage : BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr)
REFSEQ INFORMATION: The reference sequence is identical to\nFO082061.1.\n\nOn Jun 23, 2015 this sequence version replaced NZ_FO082061.1.\nAnnotation results relative to BLAST similarities, COG\nassignations, enzymatic function prediction (PRIAM software), TMHMM\nand SignalP predictions, and synteny conservation (Syntonizer\nsoftware) are available in the MicroScope annotation system\nhttp://www.genoscope.cns.fr/agc/microscope.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 01/03/2023 01:08:07\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,092\nCDSs (total) :: 4,035\nGenes (coding) :: 3,995\nCDSs (with protein) :: 3,995\nGenes (RNA) :: 57\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 44\nncRNAs :: 4\nPseudo Genes (total) :: 40\nCDSs (without protein) :: 40\nPseudo Genes (ambiguous residues) :: 0 of 40\nPseudo Genes (frameshifted) :: 7 of 40\nPseudo Genes (incomplete) :: 30 of 40\nPseudo Genes (internal stop) :: 7 of 40\nPseudo Genes (multiple problems) :: 4 of 40\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Methylomicrobium alcaliphilum
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_020475645.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003609949.1
COORDINATES: similar to AA sequence:RefSeq:WP_020157285.1
GO:0015093 - ferrous iron transmembrane transporter activity [Evidence IEA]; GO:0005525 - GTP binding [Evidence IEA]
GO:0006826 - iron ion transport [Evidence IEA]
Fe(2+) transporter permease subunit FeoB
COORDINATES: protein motif:HMM:TIGR01512.1
COORDINATES: similar to AA sequence:RefSeq:WP_019866326.1
COORDINATES: similar to AA sequence:RefSeq:WP_012500693.1
GO:0004619 - phosphoglycerate mutase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
2,3-diphosphoglycerate-dependent phosphoglycerate mutase
COORDINATES: similar to AA sequence:RefSeq:WP_011090283.1
COORDINATES: similar to AA sequence:RefSeq:WP_006098951.1
NifB/NifX family molybdenum-iron cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_005372236.1
COORDINATES: similar to AA sequence:RefSeq:WP_005372241.1
COORDINATES: similar to AA sequence:RefSeq:WP_012089436.1
COORDINATES: protein motif:HMM:NF012464.2
COORDINATES: protein motif:HMM:NF025079.2
COORDINATES: similar to AA sequence:RefSeq:WP_017841236.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018624883.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017838715.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: protein motif:HMM:NF013235.2
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
RepB family plasmid replication initiator protein
COORDINATES: similar to AA sequence:RefSeq:WP_014746722.1
COORDINATES: similar to AA sequence:RefSeq:WP_017842854.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017842853.1
COORDINATES: similar to AA sequence:RefSeq:WP_017842852.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_017842851.1
COORDINATES: similar to AA sequence:RefSeq:WP_017160890.1
COORDINATES: similar to AA sequence:RefSeq:WP_017842849.1
COORDINATES: similar to AA sequence:RefSeq:WP_017842848.1
COORDINATES: similar to AA sequence:RefSeq:WP_000283041.1
COORDINATES: similar to AA sequence:RefSeq:WP_017842846.1
COORDINATES: similar to AA sequence:RefSeq:WP_017842845.1
COORDINATES: similar to AA sequence:RefSeq:WP_010676131.1
COORDINATES: similar to AA sequence:RefSeq:WP_017842843.1
VirB4 family type IV secretion/conjugal transfer ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_017842842.1
COORDINATES: similar to AA sequence:RefSeq:WP_000753228.1
GO:0009291 - unidirectional conjugation [Evidence IEA]
P-type conjugative transfer protein TrbG
COORDINATES: similar to AA sequence:RefSeq:WP_011798704.1
COORDINATES: similar to AA sequence:RefSeq:WP_011114050.1
COORDINATES: similar to AA sequence:RefSeq:WP_011255075.1
P-type conjugative transfer protein TrbJ
COORDINATES: similar to AA sequence:RefSeq:WP_010676138.1
P-type conjugative transfer protein TrbL
COORDINATES: similar to AA sequence:RefSeq:WP_017842835.1
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017841429.1
COORDINATES: similar to AA sequence:RefSeq:WP_013819374.1
COORDINATES: protein motif:HMM:NF016232.2
COORDINATES: similar to AA sequence:RefSeq:WP_009207754.1
COORDINATES: similar to AA sequence:RefSeq:WP_017842829.1
COORDINATES: similar to AA sequence:RefSeq:WP_013818665.1
COORDINATES: similar to AA sequence:RefSeq:WP_005375209.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017842538.1
COORDINATES: similar to AA sequence:RefSeq:WP_020878634.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007869706.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0140658 - ATP-dependent chromatin remodeler activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011579888.1
COORDINATES: similar to AA sequence:RefSeq:WP_000413174.1
COORDINATES: similar to AA sequence:RefSeq:WP_011579890.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001027810.1
COORDINATES: similar to AA sequence:RefSeq:WP_008250483.1
COORDINATES: similar to AA sequence:RefSeq:WP_014808498.1
COORDINATES: similar to AA sequence:RefSeq:WP_017841052.1
COORDINATES: similar to AA sequence:RefSeq:WP_017841051.1
COORDINATES: similar to AA sequence:RefSeq:WP_017842797.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004086710.1
COORDINATES: similar to AA sequence:RefSeq:WP_017841219.1
COORDINATES: similar to AA sequence:RefSeq:WP_020565925.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_017183371.1
COORDINATES: similar to AA sequence:RefSeq:WP_013819886.1
COORDINATES: similar to AA sequence:RefSeq:WP_017841215.1
COORDINATES: similar to AA sequence:RefSeq:WP_017841269.1
COORDINATES: protein motif:HMM:NF015858.2
COORDINATES: similar to AA sequence:RefSeq:WP_005375229.1
COORDINATES: similar to AA sequence:RefSeq:WP_017279408.1
COORDINATES: similar to AA sequence:RefSeq:WP_019564015.1
COORDINATES: similar to AA sequence:RefSeq:WP_018990404.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012806702.1
COORDINATES: similar to AA sequence:RefSeq:WP_012806703.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025241.2
COORDINATES: similar to AA sequence:RefSeq:WP_011255050.1
COORDINATES: similar to AA sequence:RefSeq:WP_017842783.1
COORDINATES: similar to AA sequence:RefSeq:WP_017842782.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0008233 - peptidase activity [Evidence IEA]
conjugative transfer signal peptidase TraF
COORDINATES: similar to AA sequence:RefSeq:WP_012478237.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011137971.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017842779.1
conjugal transfer transcriptional regulator TraJ
COORDINATES: similar to AA sequence:RefSeq:WP_017842778.1
COORDINATES: similar to AA sequence:RefSeq:WP_011304098.1
COORDINATES: similar to AA sequence:RefSeq:WP_017842776.1
COORDINATES: similar to AA sequence:RefSeq:WP_017842775.1
COORDINATES: similar to AA sequence:RefSeq:WP_017842774.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611851.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011801851.1
COORDINATES: similar to AA sequence:RefSeq:WP_012806741.1
COORDINATES: similar to AA sequence:RefSeq:WP_007348139.1
COORDINATES: similar to AA sequence:RefSeq:WP_020161000.1
COORDINATES: similar to AA sequence:RefSeq:WP_016876028.1
GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IEA]