Acinetobacter schindleri strain HZE30-1 plasmid pHZE30-1-8, complete sequence.
type: Entry
definition: Acinetobacter schindleri strain HZE30-1 plasmid pHZE30-1-8, complete sequence.
sequence version: NZ_CP044491.1
sequence date: 2023-03-26
sequence: sequence
division: CON
label: NZ_CP044491.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN12478519
keyword: RefSeq
source: Acinetobacter schindleri
organism: Acinetobacter schindleri
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP044491.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 04:48:06\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,228\nCDSs (total) :: 3,116\nGenes (coding) :: 3,050\nCDSs (with protein) :: 3,050\nGenes (RNA) :: 112\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 87\nncRNAs :: 4\nPseudo Genes (total) :: 66\nCDSs (without protein) :: 66\nPseudo Genes (ambiguous residues) :: 0 of 66\nPseudo Genes (frameshifted) :: 27 of 66\nPseudo Genes (incomplete) :: 43 of 66\nPseudo Genes (internal stop) :: 16 of 66\nPseudo Genes (multiple problems) :: 17 of 66\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 6317
topology: circular
so has quality: SO_0000988
location: 1..6317
location: region:1-6317:1
RO_0002162: 108981

NZ_CP044491
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN12478519
type: BioSample
SIO_000068: biosample

1
title: Non-baumannii Acinetobacter spp. carrying blaNDM-1 isolated in China
author: Cui, C.
author: Chen, C.
author: Sun, J.
author: Liu, Y.
journal: Unpublished

2
title: Direct Submission
author: Cui, C.
author: Chen, C.
author: Sun, J.
author: Liu, Y.
journal: Submitted (17-SEP-2019) College of Veterinary Medicine, South China Agricultural University, 483 Wushan Street, Guangzhou 510642, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6317:1
position: 6317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-6317:1:source
so part of: sequence
organism: Acinetobacter schindleri
mol type: genomic DNA
strain: HZE30-1
isolation source: stool
host: goose
plasmid: pHZE30-1-8
country: China:Huizhou City, Guangdong Province
lat lon: 23.12 N 114.42 E
collection date: 2018-01-20
collected by: Chaoyuecui

108981
type: Taxonomy
SIO_000068: taxonomy

FSC11_RS16050
type: Gene
subclass of: SO_0000704
RO_0002162: 108981
locus tag: FSC11_RS16050
old locus tag: FSC11_16165
so part of: sequence
location: 494..1006
location: region:494-1006:1
so has part: feature:494-1006:1:exon
subclass of: SO_0000010

58164854
type: Gene
SIO_000068: ncbigene

position:494:1
position: 494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1006:1
position: 1006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:494-1006:1:exon

FSC11_RS16050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108981
locus tag: FSC11_RS16050
old locus tag: FSC11_16165
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005328304.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: pilin
translation: MNNQKGFTLIELMIVVAIIGILAAISIPAYQNYIARSQATEAINLLSGLKTRMVDIASTSGIQKACSTDTAKGAEGTPNTPDYKPAITEGALSSGNGFTLAGKYVAGIAGKYVAPDSCEMTATFRPAGEGLNDKIASKTVTFIYNANSGAWECKSNLVDAVRPNTCEFKQ
SIO_010081: FSC11_RS16050
subclass of: SO_0000673
so part of: FSC11_RS16050
location: 494..1006
location: region:494-1006:1
so has part: feature:494-1006:1:exon

WP_163167920.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:494-1006:1:exon

FSC11_RS16055
type: Gene
subclass of: SO_0000704
RO_0002162: 108981
locus tag: FSC11_RS16055
old locus tag: FSC11_16170
so part of: sequence
location: complement(1053..1550)
location: region:1053-1550:-1
so has part: feature:1053-1550:-1:exon
subclass of: SO_0000010

58164855
type: Gene
SIO_000068: ncbigene

position:1053:-1
position: 1053
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1550:-1
position: 1550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1053-1550:-1:exon

FSC11_RS16055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108981
locus tag: FSC11_RS16055
old locus tag: FSC11_16170
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004969149.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSNQNDLDDQLYILLASMKEYREAIADDNKRLETFYNQVASGVLDKAEKSLENANKKHTSALNNSIQALNEATNRLNLKFILIFASTFVAVMMVLILAIFLYVPSKDEIDERRADMAVLKKYPLQIRESDGEMLVRIMTKKCYSFEPNNVKNKTYDWCQIDPKKY
SIO_010081: FSC11_RS16055
subclass of: SO_0000673
so part of: FSC11_RS16055
location: complement(1053..1550)
location: region:1053-1550:-1
so has part: feature:1053-1550:-1:exon

WP_163167922.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1053-1550:-1:exon

FSC11_RS16060
type: Gene
subclass of: SO_0000704
RO_0002162: 108981
gene: mobQ
locus tag: FSC11_RS16060
old locus tag: FSC11_16175
so part of: sequence
location: complement(1547..2518)
location: region:1547-2518:-1
so has part: feature:1547-2518:-1:exon
subclass of: SO_0000010

58164856
type: Gene
SIO_000068: ncbigene

position:1547:-1
position: 1547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2518:-1
position: 2518
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1547-2518:-1:exon

FSC11_RS16060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108981
gene: mobQ
locus tag: FSC11_RS16060
old locus tag: FSC11_16175
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005265044.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobQ family relaxase
translation: MAIYHCSTKTVNRSSGRTAVASSAYRAGEKLEDERTGLTHDFTRKDGVAHAEILSNLDIEIDRGELWNLAEKTENRKDARTAREWVIALPDELDADQRKDLAKDFARSLVDRYDVIADLAIHEPSKGGNDKNHHAHIMLTTRKAELDADNKLTLTTKTDIELSNAKRKSLGMGTTQEDIKQIRETWADLANKALERAGYREKIDHRSYADQNNGLQATIHEGTKVTQLRRQGIDTEISRFNDNVKQQNTQQLDQQKQQKESILQRGLNRVDQGFDQWQKNQETKRLELERQAEMKRQQELDKQRAEQALRKASQKLNRGGMSL
SIO_010081: FSC11_RS16060
subclass of: SO_0000673
so part of: FSC11_RS16060
location: complement(1547..2518)
location: region:1547-2518:-1
so has part: feature:1547-2518:-1:exon

WP_163167924.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1547-2518:-1:exon

FSC11_RS16065
type: Gene
subclass of: SO_0000704
RO_0002162: 108981
locus tag: FSC11_RS16065
old locus tag: FSC11_16180
so part of: sequence
location: 2727..3011
location: region:2727-3011:1
so has part: feature:2727-3011:1:exon
subclass of: SO_0000010

58164857
type: Gene
SIO_000068: ncbigene

position:2727:1
position: 2727
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3011:1
position: 3011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2727-3011:1:exon

FSC11_RS16065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108981
locus tag: FSC11_RS16065
old locus tag: FSC11_16180
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004871868.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTKSAENIEKKIEAQLEKLKQLKAQKQAIEARERTKKKEQERKDDTRRKILLGSYLIKKMQANEANKEKILAELNEYLTENRDRQLFDLPDIEA
SIO_010081: FSC11_RS16065
subclass of: SO_0000673
so part of: FSC11_RS16065
location: 2727..3011
location: region:2727-3011:1
so has part: feature:2727-3011:1:exon

WP_004871868.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2727-3011:1:exon

FSC11_RS16070
type: Gene
subclass of: SO_0000704
RO_0002162: 108981
locus tag: FSC11_RS16070
old locus tag: FSC11_16185
so part of: sequence
location: complement(3008..3304)
location: region:3008-3304:-1
so has part: feature:3008-3304:-1:exon
subclass of: SO_0000010

58164858
type: Gene
SIO_000068: ncbigene

position:3008:-1
position: 3008
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3304:-1
position: 3304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3008-3304:-1:exon

FSC11_RS16070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108981
locus tag: FSC11_RS16070
old locus tag: FSC11_16185
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004856442.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIKLNNLSTDLKHVTVEYLDIVNYEIARENICGYIFLLSRLSKDAEPTEKMQMESKIQNLIYYRDNLQIEDKDNIQKVLNTLIPEYQAEQKNQTAKKN
SIO_010081: FSC11_RS16070
subclass of: SO_0000673
so part of: FSC11_RS16070
location: complement(3008..3304)
location: region:3008-3304:-1
so has part: feature:3008-3304:-1:exon

WP_163167926.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3008-3304:-1:exon

FSC11_RS16075
type: Gene
subclass of: SO_0000704
RO_0002162: 108981
gene: repM
locus tag: FSC11_RS16075
old locus tag: FSC11_16190
so part of: sequence
location: complement(3301..4233)
location: region:3301-4233:-1
so has part: feature:3301-4233:-1:exon
subclass of: SO_0000010

58164859
type: Gene
SIO_000068: ncbigene

position:3301:-1
position: 3301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4233:-1
position: 4233
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3301-4233:-1:exon

FSC11_RS16075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108981
gene: repM
locus tag: FSC11_RS16075
old locus tag: FSC11_16190
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004871874.1
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein RepM
translation: MKNGLVVKDNALINASYNLELTEQRLVMLAIINARELGRGITADSKLEIHASDYAKLFNVSPDASYKALKDAVNNLFNRQFSYTAEYKKTGKVGIVRSRWVSRIFYVDDLALLEITFAPDVVPLITRLEEHFTKYEAKQVAHLTSKYATRLYELLIAWREVGKTPVFELQQLRKNLGVEDDEYQRMHHFKSRVLETAITQINEHTDIKATYEQHKKGRTITGFSFKFKQKQQPKKLDSKRDPNTPDFFIKMTDAQRHLFAKKMSEMPEMGKYSQGTESYQQFAIRIADMLLEPEKFRELYPILEKSGFQP
SIO_010081: FSC11_RS16075
subclass of: SO_0000673
so part of: FSC11_RS16075
location: complement(3301..4233)
location: region:3301-4233:-1
so has part: feature:3301-4233:-1:exon

WP_026438545.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3301-4233:-1:exon

FSC11_RS16360
type: Gene
subclass of: SO_0000704
RO_0002162: 108981
locus tag: FSC11_RS16360
old locus tag: FSC11_16195
so part of: sequence
location: complement(4957..5160)
location: region:4957-5160:-1
so has part: feature:4957-5160:-1:exon
subclass of: SO_0000010

68605070
type: Gene
SIO_000068: ncbigene

position:4957:-1
position: 4957
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5160:-1
position: 5160
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4957-5160:-1:exon

FSC11_RS16360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108981
locus tag: FSC11_RS16360
old locus tag: FSC11_16195
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004896916.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFNLNIFNRISSEVLTIKNDLELNSENQLITKYKTSTSEDYKKAIILIFKERGYTRLEIGQLLEGQL
SIO_010081: FSC11_RS16360
subclass of: SO_0000673
so part of: FSC11_RS16360
location: complement(4957..5160)
location: region:4957-5160:-1
so has part: feature:4957-5160:-1:exon

WP_057979931.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4957-5160:-1:exon

FSC11_RS16085
type: Gene
subclass of: SO_0000704
RO_0002162: 108981
locus tag: FSC11_RS16085
old locus tag: FSC11_16200
so part of: sequence
location: 5438..5731
location: region:5438-5731:1
so has part: feature:5438-5731:1:exon
subclass of: SO_0000010

58164860
type: Gene
SIO_000068: ncbigene

position:5438:1
position: 5438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5731:1
position: 5731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5438-5731:1:exon

FSC11_RS16085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108981
locus tag: FSC11_RS16085
old locus tag: FSC11_16200
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004973743.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelB/DinJ family antitoxin
translation: MSAVNFNMRLEAELKEQVTPILEDYGLTMPQAFKLFLNQIVKTKAIPLSFDYARETALTPKAAAKLLQSLKEIESGEYTEYETVEEAIKAMSEEAHG
SIO_010081: FSC11_RS16085
subclass of: SO_0000673
so part of: FSC11_RS16085
location: 5438..5731
location: region:5438-5731:1
so has part: feature:5438-5731:1:exon

WP_163167928.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5438-5731:1:exon

FSC11_RS16090
type: Gene
subclass of: SO_0000704
RO_0002162: 108981
locus tag: FSC11_RS16090
old locus tag: FSC11_16205
so part of: sequence
location: 5724..6005
location: region:5724-6005:1
so has part: feature:5724-6005:1:exon
subclass of: SO_0000010

58164861
type: Gene
SIO_000068: ncbigene

position:5724:1
position: 5724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6005:1
position: 6005
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5724-6005:1:exon

FSC11_RS16090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108981
locus tag: FSC11_RS16090
old locus tag: FSC11_16205
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001129137.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system YafQ family toxin
translation: MAKRKIIVTSSFKRDIKRRYLELVTAEWAEVLDCLVANNPLPEKYLDHPLKGGAEFKNCRDCHVKPDLVLIYRLVGDDILELHQLDSHSEIFG
SIO_010081: FSC11_RS16090
subclass of: SO_0000673
so part of: FSC11_RS16090
location: 5724..6005
location: region:5724-6005:1
so has part: feature:5724-6005:1:exon

WP_001129137.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5724-6005:1:exon