Acinetobacter schindleri strain HZE30-1 plasmid pHZE30-1-7, complete sequence.
type: Entry
definition: Acinetobacter schindleri strain HZE30-1 plasmid pHZE30-1-7, complete sequence.
sequence version: NZ_CP044490.1
sequence date: 2023-03-26
sequence: sequence
division: CON
label: NZ_CP044490.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN12478519
keyword: RefSeq
source: Acinetobacter schindleri
organism: Acinetobacter schindleri
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP044490.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 04:48:06\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,228\nCDSs (total) :: 3,116\nGenes (coding) :: 3,050\nCDSs (with protein) :: 3,050\nGenes (RNA) :: 112\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 87\nncRNAs :: 4\nPseudo Genes (total) :: 66\nCDSs (without protein) :: 66\nPseudo Genes (ambiguous residues) :: 0 of 66\nPseudo Genes (frameshifted) :: 27 of 66\nPseudo Genes (incomplete) :: 43 of 66\nPseudo Genes (internal stop) :: 16 of 66\nPseudo Genes (multiple problems) :: 17 of 66\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 6838
topology: circular
so has quality: SO_0000988
location: 1..6838
location: region:1-6838:1
RO_0002162: 108981

NZ_CP044490
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN12478519
type: BioSample
SIO_000068: biosample

1
title: Non-baumannii Acinetobacter spp. carrying blaNDM-1 isolated in China
author: Cui, C.
author: Chen, C.
author: Sun, J.
author: Liu, Y.
journal: Unpublished

2
title: Direct Submission
author: Cui, C.
author: Chen, C.
author: Sun, J.
author: Liu, Y.
journal: Submitted (17-SEP-2019) College of Veterinary Medicine, South China Agricultural University, 483 Wushan Street, Guangzhou 510642, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6838:1
position: 6838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-6838:1:source
so part of: sequence
organism: Acinetobacter schindleri
mol type: genomic DNA
strain: HZE30-1
isolation source: stool
host: goose
plasmid: pHZE30-1-7
country: China:Huizhou City, Guangdong Province
lat lon: 23.12 N 114.42 E
collection date: 2018-01-20
collected by: Chaoyuecui

108981
type: Taxonomy
SIO_000068: taxonomy

FSC11_RS16015
type: Gene
subclass of: SO_0000704
RO_0002162: 108981
locus tag: FSC11_RS16015
old locus tag: FSC11_16130
so part of: sequence
location: join(6467..6838,1..1197)
location: region:1-6838:1
so has part: feature:6467-6838:1:exon
so has part: feature:1-1197:1:exon
subclass of: SO_0000010

58164847
type: Gene
SIO_000068: ncbigene

urn:…
SIO_000300: 1
SIO_000628: feature:6467-6838:1:exon

position:6467:1
position: 6467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-1197:1:exon

position:1197:1
position: 1197
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

FSC11_RS16015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108981
locus tag: FSC11_RS16015
old locus tag: FSC11_16130
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005028853.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-binding cassette domain-containing protein
translation: MQHACIASNLNLEFSTQKMFDQLNITLLSGQVSALIGRNGLGKSLLFRILDQSQALDIHYSGQVSWNIQHDYLAQLERLNAENIAQALEVDHLHHAFRRIENNTASFDDYELVENTWDLPQKWQNILENADLPTDLNFPTEKLSEGQKTKLALCRLFLKKDHYLLLDEPSNHLDSTSRQWLIESILAHPSGVCLISHDRQLLNQVQHIYALTELGLQHYKGNYEHYIQQHQLHMDALTQSINNEKKELKQLKQRQHDSLMKANKRQSKGNELRDSNSQAKIFLDFKKENAGQSLGKLRAQQTRQTDDLKNSLINRQTIVEKIKAQKFEFHLQSTKQGEILRIHDLKLPHTATNKINFALKAGEKIHLKGANGIGKSTLLKLISTHQRDDIFFSGTCLYLDQNFSLLNNDLSVIENLALYNSNLTEVEWRNLLGQLRIRREKALLKLSELSGGEKLKVALLAMSHYPDGIDLLLLDEPENHLDIESRELLSQAISQYQGAVILVSHDHFFVEQCEISEEYLIE
SIO_010081: FSC11_RS16015
subclass of: SO_0000673
so part of: FSC11_RS16015
location: join(6467..6838,1..1197)
location: region:1-6838:1
so has part: feature:6467-6838:1:exon
so has part: feature:1-1197:1:exon

WP_159124549.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6467-6838:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-1197:1:exon

FSC11_RS16020
type: Gene
subclass of: SO_0000704
RO_0002162: 108981
locus tag: FSC11_RS16020
old locus tag: FSC11_16135
so part of: sequence
location: complement(1412..1699)
location: region:1412-1699:-1
so has part: feature:1412-1699:-1:exon
subclass of: SO_0000010

58164848
type: Gene
SIO_000068: ncbigene

position:1412:-1
position: 1412
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1699:-1
position: 1699
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1412-1699:-1:exon

FSC11_RS16020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108981
locus tag: FSC11_RS16020
old locus tag: FSC11_16135
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000857160.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKTRAELDAMSHQELKDYEQILLALWTPRMAIESDIERLSTNRNELLEIFNQLKNPDAPENERLKNSILSLKYKIEDLEDKLDDLIQDNRLNRAD
SIO_010081: FSC11_RS16020
subclass of: SO_0000673
so part of: FSC11_RS16020
location: complement(1412..1699)
location: region:1412-1699:-1
so has part: feature:1412-1699:-1:exon

WP_000857160.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1412-1699:-1:exon

FSC11_RS16025
type: Gene
subclass of: SO_0000704
RO_0002162: 108981
locus tag: FSC11_RS16025
old locus tag: FSC11_16140
so part of: sequence
location: complement(1696..2646)
location: region:1696-2646:-1
so has part: feature:1696-2646:-1:exon
subclass of: SO_0000010

58164849
type: Gene
SIO_000068: ncbigene

position:1696:-1
position: 1696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2646:-1
position: 2646
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1696-2646:-1:exon

FSC11_RS16025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108981
locus tag: FSC11_RS16025
old locus tag: FSC11_16140
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001031297.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MNKENSYDKSYPVTTMAIQNKVTECFKSMSVDEKRILIMASPIARNVDASEQDQILISAQQFADDCGIKVNSAYKQIENASKKLVDRSFSYVNDRGKKVYSNWVIDATYEDAGISLRFTSIVLVMLKILDKYNPYTRYKKDVVLKLKKDYSIDFYHLAKKNQAKNGFELTLDEMFTEFGLPESYRDLRNLKRRVLKSSLDEINEFTDVTVDYSPVKKGRSVVGFKFTVKEKSKPKLIAPERDPKTIDMFCNLSDAQINKYSAILSKLSELSDLSNFQDYPSFALWISGILRDPKSVREETAKRIFKALHSKTDFKP
SIO_010081: FSC11_RS16025
subclass of: SO_0000673
so part of: FSC11_RS16025
location: complement(1696..2646)
location: region:1696-2646:-1
so has part: feature:1696-2646:-1:exon

WP_001031297.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1696-2646:-1:exon

FSC11_RS16030
type: Gene
subclass of: SO_0000704
RO_0002162: 108981
gene: mobQ
locus tag: FSC11_RS16030
old locus tag: FSC11_16145
so part of: sequence
location: complement(3330..4982)
location: region:3330-4982:-1
so has part: feature:3330-4982:-1:exon
subclass of: SO_0000010

58164850
type: Gene
SIO_000068: ncbigene

position:3330:-1
position: 3330
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4982:-1
position: 4982
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3330-4982:-1:exon

FSC11_RS16030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108981
gene: mobQ
locus tag: FSC11_RS16030
old locus tag: FSC11_16145
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005199240.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobQ family relaxase
translation: MAIYHFSVKTISRGNGRSAVACAAYRSGEKLVCNFYGKEQDYTKKTGVEFTEIYAPENTNTELLNRQTLWNKVEKAERRKDALLAREFEIAFPGELNAEQRKNMLNELCQNLVKKYGVIVDAAIHAPHTDSGSDERNYHAHIMFTTRSINEHGDFSAKKYRDFSRDNGTETVSHWRESFAELCNHHLKQNGFDERVDHRSYEDQESDLEATQHEGPQATYLRRRGIFTEISLKNDEIKLRNLKIKKVIALDENIKVSEDLVQKVRSELQFQYSQAEYSEKTSQKLYEFQNEELSKLTTKLDTMSSAISELRKKEPLFFKTKWINQINDLIDQHNTQLDIQKHISGLSEIEKKERYSDHLNKWTEENQLLQPKKSFAKFDEPNITVKQRKLNDQISNIDHQISEISRRETEYQEYVRDQRLEIINSYIFEEDNYGNKYFSPQNGEKQKRLYAEEMEDLKIQELHAAFTKKIETEAQQEFSQKRAIQLENDRKDRESREQRYAQEREQQEQRYAQEREQQEHLAFVRRQEQEKQQRNEPKKPENDNNHDYTP
SIO_010081: FSC11_RS16030
subclass of: SO_0000673
so part of: FSC11_RS16030
location: complement(3330..4982)
location: region:3330-4982:-1
so has part: feature:3330-4982:-1:exon

WP_163167918.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3330-4982:-1:exon

FSC11_RS16035
type: Gene
subclass of: SO_0000704
RO_0002162: 108981
locus tag: FSC11_RS16035
old locus tag: FSC11_16150
so part of: sequence
location: 5193..5495
location: region:5193-5495:1
so has part: feature:5193-5495:1:exon
subclass of: SO_0000010

58164851
type: Gene
SIO_000068: ncbigene

position:5193:1
position: 5193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5495:1
position: 5495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5193-5495:1:exon

FSC11_RS16035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108981
locus tag: FSC11_RS16035
old locus tag: FSC11_16150
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000110201.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSVETLEQKIAKQEERLRQLKAQKQAIAAREKKKNSDRQRKDDTRRKILLGAWVLNKLKNDESFKGQLTDFEKFLSTESKTEENRQKDKDLFNGVIWNNT
SIO_010081: FSC11_RS16035
subclass of: SO_0000673
so part of: FSC11_RS16035
location: 5193..5495
location: region:5193-5495:1
so has part: feature:5193-5495:1:exon

WP_000110201.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5193-5495:1:exon

FSC11_RS16040
type: Gene
subclass of: SO_0000704
RO_0002162: 108981
locus tag: FSC11_RS16040
old locus tag: FSC11_16155
so part of: sequence
location: complement(5557..5820)
location: region:5557-5820:-1
so has part: feature:5557-5820:-1:exon
subclass of: SO_0000010

58164852
type: Gene
SIO_000068: ncbigene

position:5557:-1
position: 5557
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5820:-1
position: 5820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5557-5820:-1:exon

FSC11_RS16040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108981
locus tag: FSC11_RS16040
old locus tag: FSC11_16155
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004674113.1
GO process: GO:0008219 - cell death [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Txe/YoeB family addiction module toxin
translation: MTNRNVEWTDNAWDEYIYWQTQDKKILKRINTLIKECQRTPFEGTGKPEPLKANLSGFWSRRIDEKHRLVYEVTDERISIIQCRFHY
SIO_010081: FSC11_RS16040
subclass of: SO_0000673
so part of: FSC11_RS16040
location: complement(5557..5820)
location: region:5557-5820:-1
so has part: feature:5557-5820:-1:exon

WP_000184943.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5557-5820:-1:exon

FSC11_RS16045
type: Gene
subclass of: SO_0000704
RO_0002162: 108981
locus tag: FSC11_RS16045
old locus tag: FSC11_16160
so part of: sequence
location: complement(5807..6070)
location: region:5807-6070:-1
so has part: feature:5807-6070:-1:exon
subclass of: SO_0000010

58164853
type: Gene
SIO_000068: ncbigene

position:5807:-1
position: 5807
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6070:-1
position: 6070
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5807-6070:-1:exon

FSC11_RS16045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108981
locus tag: FSC11_RS16045
old locus tag: FSC11_16160
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016658858.1
GO process: GO:0008219 - cell death [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system prevent-host-death family antitoxin
translation: MHVFTYTDARNNLKSVLDKVIDDVDVAFITRKEGGHAVVMGQDHYDSLMETLYLLSSPNNASRLNESIAQLRAGKTKHRELIEDDES
SIO_010081: FSC11_RS16045
subclass of: SO_0000673
so part of: FSC11_RS16045
location: complement(5807..6070)
location: region:5807-6070:-1
so has part: feature:5807-6070:-1:exon

WP_000557944.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5807-6070:-1:exon