Acinetobacter schindleri strain HZE30-1 plasmid pHZE30-1-6, complete sequence.
type: Entry
definition: Acinetobacter schindleri strain HZE30-1 plasmid pHZE30-1-6, complete sequence.
sequence version: NZ_CP044489.1
sequence date: 2023-03-26
sequence: sequence
division: CON
label: NZ_CP044489.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN12478519
keyword: RefSeq
source: Acinetobacter schindleri
organism: Acinetobacter schindleri
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP044489.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 04:48:06\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,228\nCDSs (total) :: 3,116\nGenes (coding) :: 3,050\nCDSs (with protein) :: 3,050\nGenes (RNA) :: 112\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 87\nncRNAs :: 4\nPseudo Genes (total) :: 66\nCDSs (without protein) :: 66\nPseudo Genes (ambiguous residues) :: 0 of 66\nPseudo Genes (frameshifted) :: 27 of 66\nPseudo Genes (incomplete) :: 43 of 66\nPseudo Genes (internal stop) :: 16 of 66\nPseudo Genes (multiple problems) :: 17 of 66\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 7333
topology: circular
so has quality: SO_0000988
location: 1..7333
location: region:1-7333:1
RO_0002162: 108981

NZ_CP044489
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN12478519
type: BioSample
SIO_000068: biosample

1
title: Non-baumannii Acinetobacter spp. carrying blaNDM-1 isolated in China
author: Cui, C.
author: Chen, C.
author: Sun, J.
author: Liu, Y.
journal: Unpublished

2
title: Direct Submission
author: Cui, C.
author: Chen, C.
author: Sun, J.
author: Liu, Y.
journal: Submitted (17-SEP-2019) College of Veterinary Medicine, South China Agricultural University, 483 Wushan Street, Guangzhou 510642, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7333:1
position: 7333
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-7333:1:source
so part of: sequence
organism: Acinetobacter schindleri
mol type: genomic DNA
strain: HZE30-1
isolation source: stool
host: goose
plasmid: pHZE30-1-6
country: China:Huizhou City, Guangdong Province
lat lon: 23.12 N 114.42 E
collection date: 2018-01-20
collected by: Chaoyuecui

108981
type: Taxonomy
SIO_000068: taxonomy

FSC11_RS15975
type: Gene
subclass of: SO_0000704
RO_0002162: 108981
gene: msr(E)
locus tag: FSC11_RS15975
old locus tag: FSC11_16090
so part of: sequence
location: join(6135..7333,1..277)
location: region:1-7333:1
so has part: feature:6135-7333:1:exon
so has part: feature:1-277:1:exon
subclass of: SO_0000010

58164839
type: Gene
SIO_000068: ncbigene

urn:…
SIO_000300: 1
SIO_000628: feature:6135-7333:1:exon

position:6135:1
position: 6135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-277:1:exon

position:277:1
position: 277
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

FSC11_RS15975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108981
gene: msr(E)
locus tag: FSC11_RS15975
old locus tag: FSC11_16090
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000052512.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC-F type ribosomal protection protein Msr(E)
translation: MSLIIKARNIRLDYAGRDVLDIDELEIHSYDRIGLVGDNGAGKSSLLKVLNGEIVLAEATLQRFGDFAHISQLGGIEIETVEDRAMLSRLGVSNVQNDTMSGGEETRAKIAAAFSQQVHGILADEPTSHLDLNGIDLLIGQLKAFDGALLVISHDRYFLDMVVDKIWELKDGKITEYWGGYSDYLRQKEEERQHQAVEYELMMKERERLESAVQEKRQQANRLDNKKKGEKSKNSTESAGRLGHAKMTGTKQRKLYQAAKSMEKRLAALEDIQAPEHLRSIRFRQSSALELHNKFPITADGLSLKFGSRTIFDDANFIIPLGAKVAITGSNGTGKTSLLKMISERADGLTISPKAEIGYFTQTGYKFNTHKSVLSFMQEECEYTVAEIRAVLASMGIGANDIQKNLSDLSGGEIIKLLLSKMLLGKYNILLMDEPGNYLDLKSIAALETMMKSYAGTIIFVSHDKQLVDNIADIIYEIKDHKIIKTFERDC
SIO_010081: FSC11_RS15975
subclass of: SO_0000673
so part of: FSC11_RS15975
location: join(6135..7333,1..277)
location: region:1-7333:1
so has part: feature:6135-7333:1:exon
so has part: feature:1-277:1:exon

WP_000052512.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6135-7333:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-277:1:exon

FSC11_RS15980
type: Gene
subclass of: SO_0000704
RO_0002162: 108981
locus tag: FSC11_RS15980
old locus tag: FSC11_16095
so part of: sequence
location: 333..1217
location: region:333-1217:1
so has part: feature:333-1217:1:exon
subclass of: SO_0000010

58164840
type: Gene
SIO_000068: ncbigene

position:333:1
position: 333
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1217:1
position: 1217
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:333-1217:1:exon

FSC11_RS15980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108981
locus tag: FSC11_RS15980
old locus tag: FSC11_16095
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014325835.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Mph(E) family macrolide 2'-phosphotransferase
translation: MTIQDIQSLAEAHGLLLTDKMNFNEMGIDFKVVFALDTKGQQWLLRIPRRDGMREQIKKEKRILELVKKHLSVEVPDWRISSTELVAYPILKDNPVLNLDAETYEIIWNMDKDSPKYITSLAKTLFEIHSIPEKEVRENDLKIMKPSDLRPEIANNLQLVKSEIGISEQLETRYRKWLDNDVLWADFTQFIHGDLYAGHVLASKDGAVSGVIDWSTAHIDDPAIDFAGHVTLFGEESLKTLIIEYEKLGGKVWNKLYEQTLERAAASPLMYGLFALETQNESLIVGAKAQLGVI
SIO_010081: FSC11_RS15980
subclass of: SO_0000673
so part of: FSC11_RS15980
location: 333..1217
location: region:333-1217:1
so has part: feature:333-1217:1:exon

WP_000155092.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:333-1217:1:exon

FSC11_RS15985
type: Gene
subclass of: SO_0000704
RO_0002162: 108981
locus tag: FSC11_RS15985
old locus tag: FSC11_16100
so part of: sequence
location: complement(1467..1964)
location: region:1467-1964:-1
so has part: feature:1467-1964:-1:exon
subclass of: SO_0000010

58164841
type: Gene
SIO_000068: ncbigene

position:1467:-1
position: 1467
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1964:-1
position: 1964
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1467-1964:-1:exon

FSC11_RS15985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108981
locus tag: FSC11_RS15985
old locus tag: FSC11_16100
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004969149.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSNQNDLDDQLYILLASMKEYREAIADDKKRLEQFYNQVASGVLDKAEKSLENTNKKHTGALNNSIQALNEATNRLNLKLIFIFASTFVAVMMVFILAIFLYIPSKDEIDERRADMAVLKKYPLQIRESDGETLVRIMRKNCYSFEPSSVKEKTYDWCQIDPKKY
SIO_010081: FSC11_RS15985
subclass of: SO_0000673
so part of: FSC11_RS15985
location: complement(1467..1964)
location: region:1467-1964:-1
so has part: feature:1467-1964:-1:exon

WP_004856450.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1467-1964:-1:exon

FSC11_RS15990
type: Gene
subclass of: SO_0000704
RO_0002162: 108981
gene: mobQ
locus tag: FSC11_RS15990
old locus tag: FSC11_16105
so part of: sequence
location: complement(1961..2932)
location: region:1961-2932:-1
so has part: feature:1961-2932:-1:exon
subclass of: SO_0000010

58164842
type: Gene
SIO_000068: ncbigene

position:1961:-1
position: 1961
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2932:-1
position: 2932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1961-2932:-1:exon

FSC11_RS15990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108981
gene: mobQ
locus tag: FSC11_RS15990
old locus tag: FSC11_16105
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005265044.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobQ family relaxase
translation: MAIYHCSTKTVNRSSGRTAVASSAYRAGEKLEDERTGLTHDFTRKDGVAHAEILSNLDIEIDRGELWNLAEKTENRKDARTAREWVIALPDELDADQRKDLAKDFARSLVDRYDVIADLAIHEPSKGGNDKNHHAHIMLTTRKAELDADNKLTLATKTDIELSNAKRKSLGMGTTQDEIKQIRETWANLANHALERAGYREKIDHRSYADQNNGLQATIHEGTKVTQLRRQGIDTEISRFNDNVKQQNAQQLDQQKQQKESVLQRGLNRVDQGFDQWQKNQETKRLELERQAEMKRQQELDKQRAEQALRKAYQKLSRGGMSL
SIO_010081: FSC11_RS15990
subclass of: SO_0000673
so part of: FSC11_RS15990
location: complement(1961..2932)
location: region:1961-2932:-1
so has part: feature:1961-2932:-1:exon

WP_065995591.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1961-2932:-1:exon

FSC11_RS15995
type: Gene
subclass of: SO_0000704
RO_0002162: 108981
locus tag: FSC11_RS15995
old locus tag: FSC11_16110
so part of: sequence
location: 3141..3428
location: region:3141-3428:1
so has part: feature:3141-3428:1:exon
subclass of: SO_0000010

58164843
type: Gene
SIO_000068: ncbigene

position:3141:1
position: 3141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3428:1
position: 3428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3141-3428:1:exon

FSC11_RS15995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108981
locus tag: FSC11_RS15995
old locus tag: FSC11_16110
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004647572.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: mobilization protein
translation: MTKSAENIEKKIEAQLEKLKQLKAQKQAIEARERTKKKEQERKDDTRRKILLGSYLIKKMQANEANKEKILAELNEYLTENRDRQLFDLPNIEDN
SIO_010081: FSC11_RS15995
subclass of: SO_0000673
so part of: FSC11_RS15995
location: 3141..3428
location: region:3141-3428:1
so has part: feature:3141-3428:1:exon

WP_159516831.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3141-3428:1:exon

FSC11_RS16000
type: Gene
subclass of: SO_0000704
RO_0002162: 108981
locus tag: FSC11_RS16000
old locus tag: FSC11_16115
so part of: sequence
location: 3431..3742
location: region:3431-3742:1
so has part: feature:3431-3742:1:exon
subclass of: SO_0000010

58164844
type: Gene
SIO_000068: ncbigene

position:3431:1
position: 3431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3742:1
position: 3742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3431-3742:1:exon

FSC11_RS16000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108981
locus tag: FSC11_RS16000
old locus tag: FSC11_16115
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004647573.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HU family DNA-binding protein
translation: MNKADLIAKLAPKLNINQDEARVVLNSVLEVITEALVEDKNVRLVDFGTFEVKQRAERMGHNPKTGEKLKIEAKEIVTFKQGKALGEQFTVKPKQKSKVKKKA
SIO_010081: FSC11_RS16000
subclass of: SO_0000673
so part of: FSC11_RS16000
location: 3431..3742
location: region:3431-3742:1
so has part: feature:3431-3742:1:exon

WP_159516832.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3431-3742:1:exon

FSC11_RS16005
type: Gene
subclass of: SO_0000704
RO_0002162: 108981
locus tag: FSC11_RS16005
old locus tag: FSC11_16120
so part of: sequence
location: complement(3739..4035)
location: region:3739-4035:-1
so has part: feature:3739-4035:-1:exon
subclass of: SO_0000010

58164845
type: Gene
SIO_000068: ncbigene

position:3739:-1
position: 3739
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4035:-1
position: 4035
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3739-4035:-1:exon

FSC11_RS16005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108981
locus tag: FSC11_RS16005
old locus tag: FSC11_16120
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004856442.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMQLENLTANFQGVQIEYTDIVNYEIARENICGYIFLLSRISQNAEPTEKMQMESKIEDLIYYRDNLQIKDKVNIQKVLNELIPEYKAEQEKQRAKKN
SIO_010081: FSC11_RS16005
subclass of: SO_0000673
so part of: FSC11_RS16005
location: complement(3739..4035)
location: region:3739-4035:-1
so has part: feature:3739-4035:-1:exon

WP_159516833.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3739-4035:-1:exon

FSC11_RS16010
type: Gene
subclass of: SO_0000704
RO_0002162: 108981
gene: repM
locus tag: FSC11_RS16010
old locus tag: FSC11_16125
so part of: sequence
location: complement(4032..4973)
location: region:4032-4973:-1
so has part: feature:4032-4973:-1:exon
subclass of: SO_0000010

58164846
type: Gene
SIO_000068: ncbigene

position:4032:-1
position: 4032
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4973:-1
position: 4973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4032-4973:-1:exon

FSC11_RS16010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108981
gene: repM
locus tag: FSC11_RS16010
old locus tag: FSC11_16125
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004779686.1
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein RepM
translation: MKNDLVIKSNTLVEACFNLSLTEYRILHVAFTELAEYESDKGLFHTREFRVYAKDYSKLFNTDESDAYKVLRDASERLFNRYFTYDRVYQKPDFIECVKSRWVQKISYADTQGYIKFQLADDVFSMIGQLKDCFTRYRLSKTAQLTSVYAIRLYEMMIQWQSTKVVPVIELNTLRERLAIEEHEYPRVYDFKNRVLDPAIKQINKYTDITVSYEQHKQGRIISGFSFKFKQKKDDKPKINTKRDPNTPDFFIKMTDAQRHLFANKMSEMPEMSKYSKGTESYQQFAIRIADMLLEPEKFRELYPFLEKAGFKS
SIO_010081: FSC11_RS16010
subclass of: SO_0000673
so part of: FSC11_RS16010
location: complement(4032..4973)
location: region:4032-4973:-1
so has part: feature:4032-4973:-1:exon

WP_087554602.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4032-4973:-1:exon