Acinetobacter schindleri strain HZE30-1 plasmid pHZE30-1-5, complete sequence.
type: Entry
definition: Acinetobacter schindleri strain HZE30-1 plasmid pHZE30-1-5, complete sequence.
sequence version: NZ_CP044488.1
sequence date: 2023-03-26
sequence: sequence
division: CON
label: NZ_CP044488.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN12478519
keyword: RefSeq
source: Acinetobacter schindleri
organism: Acinetobacter schindleri
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP044488.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 04:48:06\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,228\nCDSs (total) :: 3,116\nGenes (coding) :: 3,050\nCDSs (with protein) :: 3,050\nGenes (RNA) :: 112\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 87\nncRNAs :: 4\nPseudo Genes (total) :: 66\nCDSs (without protein) :: 66\nPseudo Genes (ambiguous residues) :: 0 of 66\nPseudo Genes (frameshifted) :: 27 of 66\nPseudo Genes (incomplete) :: 43 of 66\nPseudo Genes (internal stop) :: 16 of 66\nPseudo Genes (multiple problems) :: 17 of 66\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 8408
topology: circular
so has quality: SO_0000988
location: 1..8408
location: region:1-8408:1
RO_0002162: 108981

NZ_CP044488
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN12478519
type: BioSample
SIO_000068: biosample

1
title: Non-baumannii Acinetobacter spp. carrying blaNDM-1 isolated in China
author: Cui, C.
author: Chen, C.
author: Sun, J.
author: Liu, Y.
journal: Unpublished

2
title: Direct Submission
author: Cui, C.
author: Chen, C.
author: Sun, J.
author: Liu, Y.
journal: Submitted (17-SEP-2019) College of Veterinary Medicine, South China Agricultural University, 483 Wushan Street, Guangzhou 510642, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8408:1
position: 8408
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-8408:1:source
so part of: sequence
organism: Acinetobacter schindleri
mol type: genomic DNA
strain: HZE30-1
isolation source: stool
host: goose
plasmid: pHZE30-1-5
country: China:Huizhou City, Guangdong Province
lat lon: 23.12 N 114.42 E
collection date: 2018-01-20
collected by: Chaoyuecui

108981
type: Taxonomy
SIO_000068: taxonomy

FSC11_RS15925
type: Gene
subclass of: SO_0000704
RO_0002162: 108981
locus tag: FSC11_RS15925
old locus tag: FSC11_16040
so part of: sequence
location: 471..1604
location: region:471-1604:1
so has part: feature:471-1604:1:exon
subclass of: SO_0000010

58164829
type: Gene
SIO_000068: ncbigene

position:471:1
position: 471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1604:1
position: 1604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:471-1604:1:exon

FSC11_RS15925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108981
locus tag: FSC11_RS15925
old locus tag: FSC11_16040
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005020928.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MLQTKGGGVADKKISSLTSIKGGDIKQIRTPFMKIKIVSKTAKKSSINDFTEQDKVLYPLVSPEKKYPEYLAVLQNAFWLLQHEKPPKDDMLKLLMFFSPKVRLSDDLPTEQTVFSITAKEYAELTGLNIKGAYAALDRVVDALYNHSVIFHNEERGNVRTRLVTSTAYKEGRFTVSFTHYALHIMYVFNQQHPFTRLQIKSISGLHGHGLKLYPLLVQNEYRFNFDIAISDLKEALNIDLQSYSDYKEFKKFVLKPHIDLINLKTELSIQYKAEKKEGRKASHVNFTVTKKRTVKAEEPKKEVPDEPQKEQPKITAAIVYKELIKRPELLPRFQESGEAINEMIDRIKEDFKNGNQERWLNKLQEFGITFEEPAPF
SIO_010081: FSC11_RS15925
subclass of: SO_0000673
so part of: FSC11_RS15925
location: 471..1604
location: region:471-1604:1
so has part: feature:471-1604:1:exon

WP_227591034.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:471-1604:1:exon

FSC11_RS15930
type: Gene
subclass of: SO_0000704
RO_0002162: 108981
locus tag: FSC11_RS15930
old locus tag: FSC11_16045
so part of: sequence
location: complement(1673..2116)
location: region:1673-2116:-1
so has part: feature:1673-2116:-1:exon
subclass of: SO_0000010

58164830
type: Gene
SIO_000068: ncbigene

position:1673:-1
position: 1673
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2116:-1
position: 2116
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1673-2116:-1:exon

FSC11_RS15930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108981
locus tag: FSC11_RS15930
old locus tag: FSC11_16045
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTEQDNTPIFDSKEYAKQVSDLVNKIQGRKLTKEQLKDAKKSLADIQKLASEAIEKFSEMLPDLTPVEKKIVDAQKFGIADSVINQIFDNSNKHLNEVEQTQFIELLDKVLKSAPKREQNKIFKGSDNLKEALYLHNDDARREKLKK
SIO_010081: FSC11_RS15930
subclass of: SO_0000673
so part of: FSC11_RS15930
location: complement(1673..2116)
location: region:1673-2116:-1
so has part: feature:1673-2116:-1:exon

WP_163167903.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1673-2116:-1:exon

FSC11_RS15935
type: Gene
subclass of: SO_0000704
RO_0002162: 108981
locus tag: FSC11_RS15935
old locus tag: FSC11_16050
so part of: sequence
location: 2495..3772
location: region:2495-3772:1
so has part: feature:2495-3772:1:exon
subclass of: SO_0000010

58164831
type: Gene
SIO_000068: ncbigene

position:2495:1
position: 2495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3772:1
position: 3772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2495-3772:1:exon

FSC11_RS15935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108981
locus tag: FSC11_RS15935
old locus tag: FSC11_16050
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005102330.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobA/MobL family protein
translation: MSDKIVIRNSYSHRVSTVKKSNGHSILRIIAYIMARKLENNLTGSEHNFSHKSGVINTGFFMPYGIKTEMNEEQFYNHIENNSHASTNIIGYSSILALPPELSQEEQIKVVEKFCEDFTEQYGTCISYAIHEADNLKRKKARLEEIEKYNLPEDKEDLQLQIQNNHVHFVIPYCKIEALTEQDLKSKRKKKSHGDTFKIGSQVKDFNPIKYGSEIKKDKPDLMNIEQNFLQYMRQKPCDLFNSALEKNNRIERYTHKSYKDLGLQISATVHEGEMVKSRVAQGKKMDVHEYNKQQKAKQQTESDYLNFINVPLPKDLAYKILNGEKLAEKELLDSLKPNPKSDYEQAQELLNQINNAQQLIDNELADHKPEPTNLREKLERLKESNIPPNATAEPTETLSQKLERLKQKKAEKPKPQSDNDYSPF
SIO_010081: FSC11_RS15935
subclass of: SO_0000673
so part of: FSC11_RS15935
location: 2495..3772
location: region:2495-3772:1
so has part: feature:2495-3772:1:exon

WP_163167905.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2495-3772:1:exon

FSC11_RS15940
type: Gene
subclass of: SO_0000704
RO_0002162: 108981
locus tag: FSC11_RS15940
old locus tag: FSC11_16055
so part of: sequence
location: 3794..4936
location: region:3794-4936:1
so has part: feature:3794-4936:1:exon
subclass of: SO_0000010

58164832
type: Gene
SIO_000068: ncbigene

position:3794:1
position: 3794
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4936:1
position: 4936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3794-4936:1:exon

FSC11_RS15940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108981
locus tag: FSC11_RS15940
old locus tag: FSC11_16055
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTDNSEIIDLLTAIVSTIESQDIQAQKAKSELVEQLKVIASKTDTVSTNFPKLIETLSNFDSKIASSFDDIQNVSKQLNSVVQQISVAQKALEIVRLQASNLNIEQTTTHIKNADAQAKQLTEHLENNSQRYQNNMRAATNIAIQQVEILKKQVSTISDSFSDIVSNRISEEIIGQVSSKLTQQISDQLKSEIEVSAKDTAEKLVSSTFNKLDFAFNNAEQRLKENSTAFHNQIITTYNADLKTVKEISTELQATAQRSAELYQQREKAYQDHVLEEKKEQKLSLLKKFGIGWAIVTITGLTFGLLSQTMVESGIEKALNYRMIEARLKGLGLQMLSPDICKNYIPKQTFSQIPAIQTCFQFRNSQKIQTQYGELHVIYK
SIO_010081: FSC11_RS15940
subclass of: SO_0000673
so part of: FSC11_RS15940
location: 3794..4936
location: region:3794-4936:1
so has part: feature:3794-4936:1:exon

WP_163167907.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3794-4936:1:exon

FSC11_RS15945
type: Gene
subclass of: SO_0000704
RO_0002162: 108981
locus tag: FSC11_RS15945
old locus tag: FSC11_16060
so part of: sequence
location: 4991..5542
location: region:4991-5542:1
so has part: feature:4991-5542:1:exon
subclass of: SO_0000010

58164833
type: Gene
SIO_000068: ncbigene

position:4991:1
position: 4991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5542:1
position: 5542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4991-5542:1:exon

FSC11_RS15945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108981
locus tag: FSC11_RS15945
old locus tag: FSC11_16060
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005108696.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid replication DNA-binding protein
translation: MPKFTVAELAKQYGIARTSIYDRMKNGSISYEIDAKNRKVIDFSEMQRVYGMPNSQADSKPDSKETDNTTVELYKQLIEELRHDKSVAEERERRMYKEIEQLKDKIDNLTLALGYTPKNIQPDSQAYSTNEQTRTTTDLQEIVQPEQVTAIENKPIQQAATITPEPKKRGLFGRVLHAVLSDD
SIO_010081: FSC11_RS15945
subclass of: SO_0000673
so part of: FSC11_RS15945
location: 4991..5542
location: region:4991-5542:1
so has part: feature:4991-5542:1:exon

WP_163167909.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4991-5542:1:exon

FSC11_RS15950
type: Gene
subclass of: SO_0000704
RO_0002162: 108981
locus tag: FSC11_RS15950
old locus tag: FSC11_16065
so part of: sequence
location: complement(5724..6161)
location: region:5724-6161:-1
so has part: feature:5724-6161:-1:exon
subclass of: SO_0000010

58164834
type: Gene
SIO_000068: ncbigene

position:5724:-1
position: 5724
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6161:-1
position: 6161
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5724-6161:-1:exon

FSC11_RS15950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108981
locus tag: FSC11_RS15950
old locus tag: FSC11_16065
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004829436.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF600 family protein
translation: MNDQEIYQKIGELLWSVMPKEAVEIHFIGCIYSDYSAGGTEWLTVKNTIDSFEMGERPYLIEDQLMDHILNLNSLDIFKEKWTHFRFKLTDQGRFNAEFGYIPREDSWVNLYMKGISDLSEEELDKDYPYIPKELWEERVRVKNS
SIO_010081: FSC11_RS15950
subclass of: SO_0000673
so part of: FSC11_RS15950
location: complement(5724..6161)
location: region:5724-6161:-1
so has part: feature:5724-6161:-1:exon

WP_163167911.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5724-6161:-1:exon

FSC11_RS15955
type: Gene
subclass of: SO_0000704
RO_0002162: 108981
locus tag: FSC11_RS15955
old locus tag: FSC11_16070
so part of: sequence
location: 6458..6745
location: region:6458-6745:1
so has part: feature:6458-6745:1:exon
subclass of: SO_0000010

58164835
type: Gene
SIO_000068: ncbigene

position:6458:1
position: 6458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6745:1
position: 6745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6458-6745:1:exon

FSC11_RS15955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108981
locus tag: FSC11_RS15955
old locus tag: FSC11_16070
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019383542.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: BrnT family toxin
translation: MEQYFEWDEAKNRKNQKKHDVSFETASLVFEDPLRISIQDRHTDGEERWQTIGKVKGVLMLLVAHTIFDEDDCEIIRIISARQVTKAEQDRYEHG
SIO_010081: FSC11_RS15955
subclass of: SO_0000673
so part of: FSC11_RS15955
location: 6458..6745
location: region:6458-6745:1
so has part: feature:6458-6745:1:exon

WP_163167913.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6458-6745:1:exon

FSC11_RS15960
type: Gene
subclass of: SO_0000704
RO_0002162: 108981
locus tag: FSC11_RS15960
old locus tag: FSC11_16075
so part of: sequence
location: 6732..7046
location: region:6732-7046:1
so has part: feature:6732-7046:1:exon
subclass of: SO_0000010

58164836
type: Gene
SIO_000068: ncbigene

position:6732:1
position: 6732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7046:1
position: 7046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6732-7046:1:exon

FSC11_RS15960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108981
locus tag: FSC11_RS15960
old locus tag: FSC11_16075
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006582675.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: BrnA antitoxin family protein
translation: MSMVRYSRKELNEKFSDKQDAEIQRLLAKGTVADDQLDLSDIPEITDWSNAVRHNQFYRPVKQQTSIRLDADVLAWFKAQGKGYQTRMNEILRDAMLKELKNHQ
SIO_010081: FSC11_RS15960
subclass of: SO_0000673
so part of: FSC11_RS15960
location: 6732..7046
location: region:6732-7046:1
so has part: feature:6732-7046:1:exon

WP_120403538.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6732-7046:1:exon

FSC11_RS15965
type: Gene
subclass of: SO_0000704
RO_0002162: 108981
locus tag: FSC11_RS15965
old locus tag: FSC11_16080
so part of: sequence
location: 7139..7363
location: region:7139-7363:1
so has part: feature:7139-7363:1:exon
subclass of: SO_0000010

58164837
type: Gene
SIO_000068: ncbigene

position:7139:1
position: 7139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7363:1
position: 7363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7139-7363:1:exon

FSC11_RS15965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108981
locus tag: FSC11_RS15965
old locus tag: FSC11_16080
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004683441.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKTIIGALAVSTLLISACSTSQPMWRKAGITPHDANSALAKCRYDIGLAKVNQNEKAEMIQDCMMAQGFRYTY
SIO_010081: FSC11_RS15965
subclass of: SO_0000673
so part of: FSC11_RS15965
location: 7139..7363
location: region:7139-7363:1
so has part: feature:7139-7363:1:exon

WP_071852195.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7139-7363:1:exon

FSC11_RS15970
type: Gene
subclass of: SO_0000704
RO_0002162: 108981
locus tag: FSC11_RS15970
old locus tag: FSC11_16085
so part of: sequence
location: 7396..7998
location: region:7396-7998:1
so has part: feature:7396-7998:1:exon
subclass of: SO_0000010

58164838
type: Gene
SIO_000068: ncbigene

position:7396:1
position: 7396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7998:1
position: 7998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7396-7998:1:exon

FSC11_RS15970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108981
locus tag: FSC11_RS15970
old locus tag: FSC11_16085
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKLIGFAAIAVFCTNSLAEIPVKNNSIPFNKLPIEIKEVVQSEYIDTCQGISEDEEMQVKNPKITFNKGFLVNIDFNNDGLKDYIIRSSDVTCEGAYSIFTGNSDGFIDIYFQNEAGKYDHVLNYWLGREGLELKKIKDGYRFTSEYNDSYLAWDKSINKFISYYGPEKRKDILDINDENSTTSQTSTEKGEVLRQAFQ
SIO_010081: FSC11_RS15970
subclass of: SO_0000673
so part of: FSC11_RS15970
location: 7396..7998
location: region:7396-7998:1
so has part: feature:7396-7998:1:exon

WP_071852196.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7396-7998:1:exon