Acinetobacter schindleri strain HZE30-1 plasmid pHZE30-1-2, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter.
Non-baumannii Acinetobacter spp. carrying blaNDM-1 isolated in China
Submitted (17-SEP-2019) College of Veterinary Medicine, South China Agricultural University, 483 Wushan Street, Guangzhou 510642, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP044485.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 04:48:06\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,228\nCDSs (total) :: 3,116\nGenes (coding) :: 3,050\nCDSs (with protein) :: 3,050\nGenes (RNA) :: 112\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 87\nncRNAs :: 4\nPseudo Genes (total) :: 66\nCDSs (without protein) :: 66\nPseudo Genes (ambiguous residues) :: 0 of 66\nPseudo Genes (frameshifted) :: 27 of 66\nPseudo Genes (incomplete) :: 43 of 66\nPseudo Genes (internal stop) :: 16 of 66\nPseudo Genes (multiple problems) :: 17 of 66\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
GO:0003677 - DNA binding [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_005253288.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005248725.1
COORDINATES: protein motif:HMM:NF016957.2
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_004828551.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: similar to AA sequence:RefSeq:WP_005407444.1
VirB4 family type IV secretion/conjugal transfer ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_005248721.1
COORDINATES: similar to AA sequence:RefSeq:WP_005253285.1
COORDINATES: similar to AA sequence:RefSeq:WP_005248718.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005248715.1
COORDINATES: similar to AA sequence:RefSeq:WP_004644762.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_004644761.1
COORDINATES: similar to AA sequence:RefSeq:WP_004644760.1
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005248703.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005248700.1
COORDINATES: similar to AA sequence:RefSeq:WP_005253246.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612155.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005080579.1
GO:0004803 - transposase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF017528.2
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_005100737.1
COORDINATES: similar to AA sequence:RefSeq:WP_048608579.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1
COORDINATES: similar to AA sequence:RefSeq:WP_000704156.1
COORDINATES: similar to AA sequence:RefSeq:WP_001355915.1
trimethoprim-resistant dihydrofolate reductase DfrA1
COORDINATES: similar to AA sequence:RefSeq:WP_023994230.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF020425.2
COORDINATES: similar to AA sequence:RefSeq:WP_004644755.1
COORDINATES: similar to AA sequence:RefSeq:WP_001067856.1
IS6-like element IS26 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_004671744.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_000119670.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004782021.1
COORDINATES: similar to AA sequence:RefSeq:WP_004920414.1
thin pilus assembly outer membrane usher AcuC
COORDINATES: similar to AA sequence:RefSeq:WP_004920417.1
thin pilus assembly periplasmic chaperone AcuD
COORDINATES: similar to AA sequence:RefSeq:WP_005020913.1
COORDINATES: similar to AA sequence:RefSeq:WP_008759401.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004282172.1
COORDINATES: similar to AA sequence:RefSeq:WP_005176773.1
COORDINATES: similar to AA sequence:RefSeq:WP_010326910.1
COORDINATES: similar to AA sequence:RefSeq:WP_004733159.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010116195.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611584.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004637187.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612015.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019837317.1
COORDINATES: similar to AA sequence:RefSeq:WP_004830812.1
COORDINATES: similar to AA sequence:RefSeq:WP_007635327.1
GO:0015074 - DNA integration [Evidence IEA]
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_042893601.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612089.1
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_000214125.1
chloramphenicol/florfenicol efflux MFS transporter FloR
COORDINATES: similar to AA sequence:RefSeq:WP_001253717.1
COORDINATES: similar to AA sequence:RefSeq:WP_011117014.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
tetracycline resistance ribosomal protection protein Tet(M)
COORDINATES: similar to AA sequence:RefSeq:WP_001814923.1
tetracycline resistance determinant leader peptide
COORDINATES: similar to AA sequence:RefSeq:WP_004676048.1
COORDINATES: similar to AA sequence:RefSeq:WP_005407463.1
COORDINATES: similar to AA sequence:RefSeq:WP_004644785.1
COORDINATES: similar to AA sequence:RefSeq:WP_005407471.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_005253314.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_004644782.1
COORDINATES: similar to AA sequence:RefSeq:WP_004644781.1
COORDINATES: similar to AA sequence:RefSeq:WP_005253311.1
COORDINATES: similar to AA sequence:RefSeq:WP_005248647.1
COORDINATES: similar to AA sequence:RefSeq:WP_004644779.1
COORDINATES: similar to AA sequence:RefSeq:WP_005253307.1
COORDINATES: similar to AA sequence:RefSeq:WP_005253305.1
COORDINATES: similar to AA sequence:RefSeq:WP_004644774.1
COORDINATES: similar to AA sequence:RefSeq:WP_005253294.1
COORDINATES: similar to AA sequence:RefSeq:WP_005253292.1