Acinetobacter schindleri strain HZE30-1 plasmid pHZE30-1-1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter.
Non-baumannii Acinetobacter spp. carrying blaNDM-1 isolated in China
Submitted (17-SEP-2019) College of Veterinary Medicine, South China Agricultural University, 483 Wushan Street, Guangzhou 510642, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP044484.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 04:48:06\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,228\nCDSs (total) :: 3,116\nGenes (coding) :: 3,050\nCDSs (with protein) :: 3,050\nGenes (RNA) :: 112\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 87\nncRNAs :: 4\nPseudo Genes (total) :: 66\nCDSs (without protein) :: 66\nPseudo Genes (ambiguous residues) :: 0 of 66\nPseudo Genes (frameshifted) :: 27 of 66\nPseudo Genes (incomplete) :: 43 of 66\nPseudo Genes (internal stop) :: 16 of 66\nPseudo Genes (multiple problems) :: 17 of 66\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_004882790.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004761033.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611467.1
GO:0015074 - DNA integration [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000742756.1
GO:0004803 - transposase activity [Evidence IEA]
IS5-like element IS17 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_010454852.1
COORDINATES: similar to AA sequence:RefSeq:WP_010236970.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010454848.1
four-carbon acid sugar kinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010454845.1
COORDINATES: similar to AA sequence:RefSeq:WP_011657206.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_076612089.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_006954076.1
IS21-like element ISAba8 family helper ATPase IstB
COORDINATES: similar to AA sequence:RefSeq:WP_016659752.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS21-like element ISAba8 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_001986494.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004974601.1
COORDINATES: similar to AA sequence:RefSeq:WP_004974600.1
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_002011209.1
COORDINATES: protein motif:HMM:NF017528.2
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_004694823.1
COORDINATES: similar to AA sequence:RefSeq:WP_032072965.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611584.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004778756.1
COORDINATES: similar to AA sequence:RefSeq:WP_000288001.1
COORDINATES: similar to AA sequence:RefSeq:WP_004999435.1
COORDINATES: similar to AA sequence:RefSeq:WP_004780012.1
COORDINATES: protein motif:HMM:NF015669.2
COORDINATES: similar to AA sequence:RefSeq:YP_005221000.1
COORDINATES: similar to AA sequence:RefSeq:WP_000422636.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611607.1
COORDINATES: similar to AA sequence:RefSeq:WP_032492661.1
subclass B1 metallo-beta-lactamase NDM-1
COORDINATES: similar to AA sequence:RefSeq:WP_004201167.1
COORDINATES: similar to AA sequence:RefSeq:WP_004201168.1
GO:0004640 - phosphoribosylanthranilate isomerase activity [Evidence IEA]
GO:0000162 - tryptophan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006399920.1
twin-arginine translocation (TAT) pathway signal sequence domain protein
COORDINATES: protein motif:HMM:NF022853.2
protein-disulfide reductase DsbD family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004993315.1
COORDINATES: similar to AA sequence:RefSeq:WP_005401805.1
COORDINATES: similar to AA sequence:RefSeq:WP_010116199.1
organic hydroperoxide resistance protein
COORDINATES: similar to AA sequence:RefSeq:WP_016658832.1
COORDINATES: similar to AA sequence:RefSeq:WP_005096948.1
COORDINATES: similar to AA sequence:RefSeq:WP_005020944.1
COORDINATES: similar to AA sequence:RefSeq:WP_019383542.1
COORDINATES: similar to AA sequence:RefSeq:WP_006582675.1
COORDINATES: similar to AA sequence:RefSeq:WP_000172759.1
COORDINATES: similar to AA sequence:RefSeq:WP_000286964.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_000985610.1
putative addiction module antidote protein
COORDINATES: similar to AA sequence:RefSeq:WP_001180106.1
COORDINATES: similar to AA sequence:RefSeq:WP_000897307.1
COORDINATES: similar to AA sequence:RefSeq:WP_000369784.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612069.1
IS4-like element ISAba1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_001043260.1
sulfonamide-resistant dihydropteroate synthase Sul2
COORDINATES: similar to AA sequence:RefSeq:WP_008891390.1
catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001120888.1
IS91-like element ISVsa3 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_001067784.1
IS6-like element IS1006 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_004811060.1
BREX system Lon protease-like protein BrxL
COORDINATES: similar to AA sequence:RefSeq:WP_001052669.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005244994.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
BREX-1 system adenine-specific DNA-methyltransferase PglX
COORDINATES: similar to AA sequence:RefSeq:WP_019383579.1
COORDINATES: similar to AA sequence:RefSeq:WP_004758930.1
COORDINATES: similar to AA sequence:RefSeq:WP_004781050.1
COORDINATES: similar to AA sequence:RefSeq:WP_005264236.1
COORDINATES: similar to AA sequence:RefSeq:WP_019836729.1
COORDINATES: similar to AA sequence:RefSeq:WP_005137497.1
COORDINATES: similar to AA sequence:RefSeq:WP_004761052.1
HNH endonuclease signature motif containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010890156.1
aminoglycoside O-phosphotransferase APH(3'')-Ib
COORDINATES: similar to AA sequence:RefSeq:WP_000480972.1
aminoglycoside O-phosphotransferase APH(6)-Id
APH(3')-VI family aminoglycoside O-phosphotransferase
COORDINATES: protein motif:HMM:NF016876.2
APH(3'') family aminoglycoside O-phosphotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_001253717.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000214125.1
chloramphenicol/florfenicol efflux MFS transporter FloR
COORDINATES: protein motif:HMM:NF023271.2
COORDINATES: protein motif:HMM:NF012616.2
rRNA adenine N(6)-methyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_000743213.1
COORDINATES: similar to AA sequence:RefSeq:WP_001370723.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015060600.1
tetracycline-inactivating monooxygenase Tet(X3)
COORDINATES: similar to AA sequence:RefSeq:WP_020252913.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
IS6-like element IS26 family transposase
transposase zinc-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002552500.1
COORDINATES: similar to AA sequence:RefSeq:WP_015268017.1
tetracycline-inactivating monooxygenase Tet(X)
COORDINATES: similar to AA sequence:RefSeq:WP_009090373.1
COORDINATES: similar to AA sequence:RefSeq:WP_002994913.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611942.1
COORDINATES: similar to AA sequence:RefSeq:WP_004232337.1
COORDINATES: similar to AA sequence:RefSeq:WP_016655059.1
COORDINATES: similar to AA sequence:RefSeq:WP_000627021.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004658363.1
COORDINATES: similar to AA sequence:RefSeq:WP_005403786.1
COORDINATES: similar to AA sequence:RefSeq:WP_010557527.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008109680.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_016899210.1
COORDINATES: similar to AA sequence:RefSeq:WP_002962247.1
Cd(II)/Pb(II)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_000059635.1
COORDINATES: similar to AA sequence:RefSeq:WP_016659756.1
IS200/IS605 family accessory protein TnpB-related protein
COORDINATES: similar to AA sequence:RefSeq:WP_000550046.1
COORDINATES: similar to AA sequence:RefSeq:WP_000097414.1
COORDINATES: similar to AA sequence:RefSeq:WP_019383568.1
COORDINATES: similar to AA sequence:RefSeq:WP_005245167.1
COORDINATES: similar to AA sequence:RefSeq:WP_000911012.1
COORDINATES: similar to AA sequence:RefSeq:WP_002125865.1
COORDINATES: similar to AA sequence:RefSeq:WP_004658347.1
putative adenosine monophosphate-protein transferase Fic
COORDINATES: similar to AA sequence:RefSeq:WP_004726728.1
COORDINATES: similar to AA sequence:RefSeq:WP_000366815.1
COORDINATES: similar to AA sequence:RefSeq:WP_005237543.1
type II toxin-antitoxin system HipA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004986464.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004758937.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013540.2
COORDINATES: similar to AA sequence:RefSeq:WP_076612155.1
COORDINATES: similar to AA sequence:RefSeq:WP_004828551.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: similar to AA sequence:RefSeq:WP_005080579.1
COORDINATES: similar to AA sequence:RefSeq:WP_004882792.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein