Nilaparvata lugens mitochondrion, complete genome.
type: Entry
definition: Nilaparvata lugens mitochondrion, complete genome.
sequence version: NC_021748.1
sequence date: 2023-04-03
sequence: sequence
division: INV
label: NC_021748.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Nilaparvata lugens (brown planthopper)
organism: Nilaparvata lugens
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Auchenorrhyncha; Fulgoroidea; Delphacidae; Delphacinae; Nilaparvata.
reference: 1
reference: 2
reference: 3
comment: PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to JX880069.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 17619
topology: circular
so has quality: SO_0000988
location: 1..17619
location: region:1-17619:1
RO_0002162: 108931

NC_021748
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: The complete mitochondrial genome of the brown planthopper, Nilaparvata lugens
author: Zhang, K.-J.
author: Zhu, W.-C.
author: Rong, X.
author: Hong, X.-Y.
journal: Unpublished

2
title: Direct Submission
journal: Submitted (18-JUL-2013) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Zhang, K.-J.
author: Zhu, W.-C.
author: Rong, X.
author: Hong, X.-Y.
journal: Submitted (29-SEP-2012) Department of Entomology, Nanjing Agricultual University, Weigang 1, Nanjing, Jiangsu 210095, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17619:1
position: 17619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-17619:1:source
so part of: sequence
organism: Nilaparvata lugens
organelle: mitochondrion
mol type: genomic DNA

108931
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 108931
product: tRNA-Ile
anticodon: (pos:30..32,aa:Ile,seq:gat)
so part of: sequence
location: 1..69
location: region:1-69:1
so has part: feature:1-69:1:region

position:69:1
position: 69
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-69:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 108931
product: tRNA-Gln
anticodon: (pos:complement(108..110),aa:Gln,seq:ttg)
so part of: sequence
location: complement(73..139)
location: region:73-139:-1
so has part: feature:73-139:-1:region

position:73:-1
position: 73
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:139:-1
position: 139
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:73-139:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 108931
product: tRNA-Met
anticodon: (pos:171..173,aa:Met,seq:cat)
so part of: sequence
location: 139..202
location: region:139-202:1
so has part: feature:139-202:1:region

position:139:1
position: 139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:202:1
position: 202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:139-202:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 108931
gene: ND2
so part of: sequence
location: 203..1156
location: region:203-1156:1
so has part: feature:203-1156:1:exon
subclass of: SO_0000010

16216538
type: Gene
SIO_000068: ncbigene

position:203:1
position: 203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1156:1
position: 1156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:203-1156:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108931
gene: ND2
codon start: 1
transl table: 5
product: NADH dehydrogenase subunit 2
translation: MKLNMSKMIFISMIFVSSFISLSMNNWFSMWIIMEISLFMFIPLMSKNKISDQSMKYFIIQSISSYLFIFSIIINSMNEMYINNPLTLLSLMLKIGMPPFHIWKPEIMSKLPWMECLLLTTLIKIPPMILINKLISFKMLMIPLLITLIIGSLSGLNQLNLKKMMAFSSIFNLPWMSSAFLISEKIMLTFLIFYIMLNFKLMSLFKLNNLNYLNQLNFLPLKTKMTMNLNMLSLSGLPPLLGFFPKWMILNELTKTLMILPSIMILTSMISMFMYIQINYFSMNNFSFKKKNFKNNTAKSFSILNLMAFPMMLIFWM
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 203..1156
location: region:203-1156:1
so has part: feature:203-1156:1:exon

YP_008238907.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:203-1156:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 108931
product: tRNA-Cys
anticodon: (pos:complement(1188..1190),aa:Cys,seq:gca)
so part of: sequence
location: complement(1157..1219)
location: region:1157-1219:-1
so has part: feature:1157-1219:-1:region

position:1157:-1
position: 1157
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1219:-1
position: 1219
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1157-1219:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 108931
product: tRNA-Cys
anticodon: (pos:complement(1599..1601),aa:Cys,seq:gca)
so part of: sequence
location: complement(1568..1630)
location: region:1568-1630:-1
so has part: feature:1568-1630:-1:region

position:1568:-1
position: 1568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1630:-1
position: 1630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1568-1630:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 108931
product: tRNA-Cys
anticodon: (pos:complement(2010..2012),aa:Cys,seq:gca)
so part of: sequence
location: complement(1979..2041)
location: region:1979-2041:-1
so has part: feature:1979-2041:-1:region

position:1979:-1
position: 1979
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2041:-1
position: 2041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1979-2041:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 108931
product: tRNA-Trp
anticodon: (pos:2082..2084,aa:Trp,seq:tca)
so part of: sequence
location: 2052..2116
location: region:2052-2116:1
so has part: feature:2052-2116:1:region

position:2052:1
position: 2052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2116:1
position: 2116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2052-2116:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 108931
product: tRNA-Tyr
anticodon: (pos:complement(2157..2159),aa:Tyr,seq:gta)
so part of: sequence
location: complement(2126..2188)
location: region:2126-2188:-1
so has part: feature:2126-2188:-1:region

position:2126:-1
position: 2126
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2188:-1
position: 2188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2126-2188:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 108931
gene: COX1
so part of: sequence
location: 2202..3735
location: region:2202-3735:1
so has part: feature:2202-3735:1:exon
subclass of: SO_0000010

16216526
type: Gene
SIO_000068: ncbigene

position:2202:1
position: 2202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3735:1
position: 3735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2202-3735:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108931
gene: COX1
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:3735,aa:TERM)
transl table: 5
product: cytochrome c oxidase subunit I
translation: MKKWLMSTNHKDIGTLYFILGIWSGFMGTMSSMIIRSELTQPGSLIKNDQIYNVLITSHAFIMIFFMVMPILIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLILLISSSLTGTGSGTGWTVYPPLSSVTSHSGPSVDLTIFSLHIAGVSSIMGAINFISTILNMRSKNISMEKLPLFCWSVLITAILLLLSLPVLAGAITMLLTDRNLNTSFFDPTGGGDPILYQHLFWFFGHPEVYILILPGFGLISHIIMQESGKSETFGSIGMIYAMIAIGILGFIVWAHHMFTVGMDIDTRAYFTSATMIIAVPTGIKIFSWIATIYGSKMNFSPQMIWSLGFILLFTIGGLTGVMLSNSSIDIILHDTYYVVAHFHYVLSMGAVFTIIASFIHWYPLFTGSNMNNKWLKIQFYSMFLGVNLTFFPQHFLGLTGMPRRYSDYPDMYTLWNLFSSMGSFISLISILMLMFIMWESLSFKRKMVFKTNQPQSIEWKMNLPPSEHSFNEIPMLIK
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 2202..3735
location: region:2202-3735:1
so has part: feature:2202-3735:1:exon

YP_008238908.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2202-3735:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 108931
product: tRNA-Leu
anticodon: (pos:3765..3767,aa:Leu,seq:taa)
so part of: sequence
location: 3736..3801
location: region:3736-3801:1
so has part: feature:3736-3801:1:region

position:3736:1
position: 3736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3801:1
position: 3801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3736-3801:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 108931
gene: COX2
so part of: sequence
location: 3802..4464
location: region:3802-4464:1
so has part: feature:3802-4464:1:exon
subclass of: SO_0000010

16216527
type: Gene
SIO_000068: ncbigene

position:3802:1
position: 3802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4464:1
position: 4464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3802-4464:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108931
gene: COX2
codon start: 1
transl table: 5
product: cytochrome c oxidase subunit II
translation: MSWTKLYLPDAYSPTMEQLTFFHDHTMSIIISITTMIVFLLNSLIYNKLIDLNINENQVIETWWTILPTIILFFVAIPSLKILYSMEELINPTISIKSMGHQWYWSYEYSDKLKKEFDSYMKYSKISDFRLIEVDNRMKAPFLTQLRMIFSSSDVLHSWTIPSLGVKMDAIPGRLNQSSMLIKKPGLFTGQCSEICGTNHSFMPIMLESVKLEKFVKWMK
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 3802..4464
location: region:3802-4464:1
so has part: feature:3802-4464:1:exon

YP_008238909.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3802-4464:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 108931
product: tRNA-Lys
anticodon: (pos:4506..4508,aa:Lys,seq:ctt)
so part of: sequence
location: 4476..4546
location: region:4476-4546:1
so has part: feature:4476-4546:1:region

position:4476:1
position: 4476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4546:1
position: 4546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4476-4546:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 108931
product: tRNA-Asp
anticodon: (pos:4578..4580,aa:Asp,seq:gtc)
so part of: sequence
location: 4547..4610
location: region:4547-4610:1
so has part: feature:4547-4610:1:region

position:4547:1
position: 4547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4610:1
position: 4610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4547-4610:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 108931
gene: ATP8
so part of: sequence
location: 4611..4709
location: region:4611-4709:1
so has part: feature:4611-4709:1:exon
subclass of: SO_0000010

16216528
type: Gene
SIO_000068: ncbigene

position:4611:1
position: 4611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4709:1
position: 4709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4611-4709:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108931
gene: ATP8
codon start: 1
transl table: 5
product: ATP synthase F0 subunit 8
translation: MPQMSPCSWMSILFMTNLTLKLIKMNLFFEKK
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 4611..4709
location: region:4611-4709:1
so has part: feature:4611-4709:1:exon

YP_008238910.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4611-4709:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 108931
gene: ATP6
so part of: sequence
location: 4709..5360
location: region:4709-5360:1
so has part: feature:4709-5360:1:exon
subclass of: SO_0000010

16216529
type: Gene
SIO_000068: ncbigene

position:5360:1
position: 5360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4709-5360:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108931
gene: ATP6
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:5360,aa:TERM)
transl table: 5
product: ATP synthase F0 subunit 6
translation: MSNLFSSFDPSTPSPLWTNWISLMLILLFMPNKFWMSESRNSMTKLILKNFILKEMSFIYFNKQFMLNLQTIFIFILTINLMGISPYTFTPTSHLSVSIAIGLPIWISLMTYSWLNFTNLMFSHLLPMSTPPTMAPFMIMVESISNLIRPISLSVRLSANMIAGHLLMTLLGNINEMKTIMLIGLMQFFLMLFEISVALIQAYVFSILMTMYSSEVP
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 4709..5360
location: region:4709-5360:1
so has part: feature:4709-5360:1:exon

YP_008238911.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4709-5360:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 108931
gene: COX3
so part of: sequence
location: 5361..6138
location: region:5361-6138:1
so has part: feature:5361-6138:1:exon
subclass of: SO_0000010

16216530
type: Gene
SIO_000068: ncbigene

position:5361:1
position: 5361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6138:1
position: 6138
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5361-6138:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108931
gene: COX3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:6138,aa:TERM)
transl table: 5
product: cytochrome c oxidase subunit III
translation: MKKNHPFHLVTKSPWPILVSFSMLNFLIGFINLMNESPLLFYLSSLTMMINLTQWWRDVKRESSIKGDHTKIVKEMIKMGMIMFIMSEIMFFLSFFWSFLHSSLAPSIEIGMKWPPKGVTPFNPMEIPLLNTIILVSSGASITWAHHSLLSNKLNQTIKSMIITITMGLYFSILQWWEYKNAPFTISDSIFGSSFFMTTGFHGIHVIMGTIFILTALESILMMKSNYLNHISFELSAWYWHFVDVIWLFLYIILYWWNK
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 5361..6138
location: region:5361-6138:1
so has part: feature:5361-6138:1:exon

YP_008238912.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5361-6138:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 108931
product: tRNA-Gly
anticodon: (pos:6169..6171,aa:Gly,seq:tcc)
so part of: sequence
location: 6139..6200
location: region:6139-6200:1
so has part: feature:6139-6200:1:region

position:6139:1
position: 6139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6200:1
position: 6200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6139-6200:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 108931
gene: ND3
so part of: sequence
location: 6201..6551
location: region:6201-6551:1
so has part: feature:6201-6551:1:exon
subclass of: SO_0000010

16216531
type: Gene
SIO_000068: ncbigene

position:6201:1
position: 6201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6551:1
position: 6551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6201-6551:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108931
gene: ND3
codon start: 1
transl table: 5
product: NADH dehydrogenase subunit 3
translation: MKMFMSLLMIMFLLILLMSTSFLISKKSIMDINKSSPFECGFSNFSSSRISFSIHFFMIAIIFIMFDIEMAIMLPIFISMKLMTVKKWFTLSMLICMLILYGLYHEWMNGIIEWSK
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 6201..6551
location: region:6201-6551:1
so has part: feature:6201-6551:1:exon

YP_008238913.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6201-6551:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 108931
product: tRNA-Ala
anticodon: (pos:6582..6584,aa:Ala,seq:tgc)
so part of: sequence
location: 6553..6613
location: region:6553-6613:1
so has part: feature:6553-6613:1:region

position:6553:1
position: 6553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6613:1
position: 6613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6553-6613:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 108931
product: tRNA-Arg
anticodon: (pos:6645..6647,aa:Arg,seq:tcg)
so part of: sequence
location: 6618..6677
location: region:6618-6677:1
so has part: feature:6618-6677:1:region

position:6618:1
position: 6618
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6677:1
position: 6677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6618-6677:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 108931
product: tRNA-Asn
anticodon: (pos:6707..6709,aa:Asn,seq:gtt)
so part of: sequence
location: 6677..6740
location: region:6677-6740:1
so has part: feature:6677-6740:1:region

position:6740:1
position: 6740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6677-6740:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 108931
product: tRNA-Ser
anticodon: (pos:6761..6763,aa:Ser,seq:gct)
so part of: sequence
location: 6741..6797
location: region:6741-6797:1
so has part: feature:6741-6797:1:region

position:6741:1
position: 6741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6797:1
position: 6797
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6741-6797:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 108931
product: tRNA-Glu
anticodon: (pos:6829..6831,aa:Glu,seq:ttc)
so part of: sequence
location: 6798..6862
location: region:6798-6862:1
so has part: feature:6798-6862:1:region

position:6798:1
position: 6798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6862:1
position: 6862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6798-6862:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 108931
product: tRNA-Phe
anticodon: (pos:complement(6894..6896),aa:Phe,seq:gaa)
so part of: sequence
location: complement(6863..6928)
location: region:6863-6928:-1
so has part: feature:6863-6928:-1:region

position:6863:-1
position: 6863
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6928:-1
position: 6928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6863-6928:-1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 108931
gene: ND5
so part of: sequence
location: complement(6929..8603)
location: region:6929-8603:-1
so has part: feature:6929-8603:-1:exon
subclass of: SO_0000010

16216532
type: Gene
SIO_000068: ncbigene

position:6929:-1
position: 6929
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8603:-1
position: 8603
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6929-8603:-1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108931
gene: ND5
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:complement(6929),aa:TERM)
transl table: 5
product: NADH dehydrogenase subunit 5
translation: MLFVLNVNFFFFFLFLLFFFLGVYFHMLNLSLILTYNFFSFNSCIYSFIFLFDWLSLIFLSVVFMISGCVFLYSLGYMSGDNFIIRFYFLVFMFILSMFFLIIMPDIVCLMLGWDGLGLVSYCLVIYYQNLNSLSSGYLTLFINRLGDMFLILCICCGFNYGCWHYLYFFSFNSLNYYMFIFLVLSCLTSSAQFPFSSWLPAAMAAPTPVSSLVHSSTLVTAGVYLLIRFNKFISIELNLILLNLSLLTILLSGMGALYENDLKKIIAFSTMGQLSFMIFSILMGSHYLSFLHLLIHAVFKSLLFLCSGIFISGFMGMQDIRYMGNLGFQSPLISSSFLISLFSLCGLPFYSGFFSSDFIIEMVILTEINFIYFILFFLSIYLTLIYSLRLFFYLYMNSVKMNLFNFENDFYMSSSCLILLILSIFFGSSLFWLLDLSYINVFDEIYKYLILFFFVYFFILTDIFSLFNKNVYNFLGFFMGHMWFLPFFSSKFIVSKFFNLSHLIFLITDLCWTEYLVSLNLINKLRFVNIYLNKLLLNSFKVYLVFFILMLFLMMIM
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: complement(6929..8603)
location: region:6929-8603:-1
so has part: feature:6929-8603:-1:exon

YP_008238914.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6929-8603:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 108931
product: tRNA-His
anticodon: (pos:complement(8631..8633),aa:His,seq:gtg)
so part of: sequence
location: complement(8604..8664)
location: region:8604-8664:-1
so has part: feature:8604-8664:-1:region

position:8604:-1
position: 8604
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8664:-1
position: 8664
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8604-8664:-1:region

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 108931
gene: ND4
so part of: sequence
location: complement(8665..9980)
location: region:8665-9980:-1
so has part: feature:8665-9980:-1:exon
subclass of: SO_0000010

16216533
type: Gene
SIO_000068: ncbigene

position:8665:-1
position: 8665
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9980:-1
position: 9980
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8665-9980:-1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108931
gene: ND4
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:complement(8665..8666),aa:TERM)
transl table: 5
product: NADH dehydrogenase subunit 4
translation: MLSLIFFTFFLTLISLKIDFYMIMYMFFFLFMVFMSKYEFYDFFSFVSFSLGMDKYSYFLMFLTFWLFILSLFSLLNLKSLYFSYLKFIMLIMVLFLFLCFLSLSFFNFYFYFECSVIPVFLVIYGWGYQPERVFSSLYFFFYTLFSSLPLLLLILSLNNLFGYFYLGMHLELLNLYCFFFFIFSFLVKLPLFFFHLWLPKAHVEAPSTGSMILAGVMLKLGGYGLIRVLYLFKDLVFIYSYFFISVSILGALYVSFFCLLQSDLSVLVAYSSVSHMGLVISGIFTCSYYGYMGSLCLMISHGLISSGLFYFVGCLFDRFSSRSLFLMSGMINYCPSFMMFFFFLIVSNMSCPPSLNLISEVFICFSLLMWHPVSLLYIFFSLFFSACAMICLFSFISHGGYSYLFMNMDSGLVREYYVIFLHIFPVYMFVFSLNYFI
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: complement(8665..9980)
location: region:8665-9980:-1
so has part: feature:8665-9980:-1:exon

YP_008238915.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8665-9980:-1:exon

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 108931
gene: ND4L
so part of: sequence
location: complement(9974..10243)
location: region:9974-10243:-1
so has part: feature:9974-10243:-1:exon
subclass of: SO_0000010

16216534
type: Gene
SIO_000068: ncbigene

position:9974:-1
position: 9974
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10243:-1
position: 10243
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9974-10243:-1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108931
gene: ND4L
codon start: 1
transl table: 5
product: NADH dehydrogenase subunit 4L
translation: MVFNFMILFNLISLMVVRKHYLMTLIVIEIIFITLMNLFYYYLNFYYFENSLGLVYLIMGVVDSSLGLSLLVYLVRSVNLPYISSFSLC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: complement(9974..10243)
location: region:9974-10243:-1
so has part: feature:9974-10243:-1:exon

YP_008238916.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9974-10243:-1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 108931
gene: ND6
so part of: sequence
location: 10277..10816
location: region:10277-10816:1
so has part: feature:10277-10816:1:exon
subclass of: SO_0000010

16216535
type: Gene
SIO_000068: ncbigene

position:10277:1
position: 10277
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10816:1
position: 10816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10277-10816:1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108931
gene: ND6
codon start: 1
transl table: 5
product: NADH dehydrogenase subunit 6
translation: MSNCIKFIQVSLILNSIMSMFMNHPISLGTTLMIQSISTSLFMNLLTKNSWNSMILFITFSSGLMIMFMYMASISSNEKFKWSLKLFLMIMCLMLTSTVMKEFMIMNKFNMNEQSLFIQDNEEKKSIMKIIGSNKILLFILVTLIILMVLFSISNLINSFEGPLKKTYEKLKILYRMIN
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: 10277..10816
location: region:10277-10816:1
so has part: feature:10277-10816:1:exon

YP_008238917.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10277-10816:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 108931
product: tRNA-Pro
anticodon: (pos:complement(10894..10896),aa:Pro,seq:tgg)
so part of: sequence
location: complement(10865..10926)
location: region:10865-10926:-1
so has part: feature:10865-10926:-1:region

position:10865:-1
position: 10865
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10926:-1
position: 10926
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10865-10926:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 108931
product: tRNA-Thr
anticodon: (pos:10959..10961,aa:Thr,seq:tgt)
so part of: sequence
location: 10927..10990
location: region:10927-10990:1
so has part: feature:10927-10990:1:region

position:10927:1
position: 10927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10990:1
position: 10990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10927-10990:1:region

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 108931
gene: CYTB
so part of: sequence
location: 10998..12101
location: region:10998-12101:1
so has part: feature:10998-12101:1:exon
subclass of: SO_0000010

16216536
type: Gene
SIO_000068: ncbigene

position:10998:1
position: 10998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12101:1
position: 12101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10998-12101:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108931
gene: CYTB
codon start: 1
transl table: 5
product: cytochrome b
translation: MKKNFKTLNSFLINLPTPSNISYWWNLGSILGVCLMIQIVSGIFLSMHYTPNISLAFNSMIHITRDVNFGWLLRIIHANGASLFFFFMFIHTGRGIYYGSFLKKKVWISGTLIMLILMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGNSLVTWIWGGFSVENPTLNRFFSFHFILPFILCVIIMFHLIFLHEKGSSNPLGLINKVDKISFHPYFTIKDIFGFMIMMLFFFFINMKTPFMFNDPENFMPANPMVTPPHIQPEWYFLFAYAILRSIPNKLGGVVALFLSIVIITTLPFTSNLKFKSSSMYPIKKILFIMFCMTFMLLTWIGAKPVETPFIFIGQLLTLIYFMFFLINPILYKFNE
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 10998..12101
location: region:10998-12101:1
so has part: feature:10998-12101:1:exon

YP_008238918.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10998-12101:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 108931
product: tRNA-Ser
anticodon: (pos:12121..12123,aa:Ser,seq:tga)
so part of: sequence
location: 12092..12153
location: region:12092-12153:1
so has part: feature:12092-12153:1:region

position:12092:1
position: 12092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12153:1
position: 12153
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12092-12153:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 108931
gene: ND1
so part of: sequence
location: complement(12174..13091)
location: region:12174-13091:-1
so has part: feature:12174-13091:-1:exon
subclass of: SO_0000010

16216537
type: Gene
SIO_000068: ncbigene

position:12174:-1
position: 12174
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13091:-1
position: 13091
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12174-13091:-1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 108931
gene: ND1
codon start: 1
transl table: 5
product: NADH dehydrogenase subunit 1
translation: MFLLSFMVLLILILISVAFYVLLERKVLGYIQARSGPSKVGYMGILQPFSDAIKLFSSESYYLYFGNLTIYYLMPLLGLLISLNLWCLYPLSFNFLSFPLGLLFFIACSSFMVYSILLSSWSSNSSYSLLGCMRSVAQSISYEVCMFLIMFNFIFFFYGFNLMKFFYSQQLNWFLIMGYPLFLILFACVLAETNRSPFDFSEGESELVSGFNTEYSSFNFSFIFLSEYTNMIFMSLILVMIFFGADFFSLIFFLKVMFMNFIFIWIRGSFPRLRYDKLMMICWKIYLPVALHYFFFFLNVMILIY
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: complement(12174..13091)
location: region:12174-13091:-1
so has part: feature:12174-13091:-1:exon

YP_008238919.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12174-13091:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 108931
product: tRNA-Leu
anticodon: (pos:complement(13123..13125),aa:Leu,seq:tag)
so part of: sequence
location: complement(13093..13154)
location: region:13093-13154:-1
so has part: feature:13093-13154:-1:region

position:13093:-1
position: 13093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13154:-1
position: 13154
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13093-13154:-1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 108931
product: l-rRNA
note: 16S ribosomal RNA
so part of: sequence
location: complement(13155..14373)
location: region:13155-14373:-1
so has part: feature:13155-14373:-1:region

position:13155:-1
position: 13155
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14373:-1
position: 14373
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13155-14373:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 108931
product: tRNA-Val
anticodon: (pos:complement(14412..14414),aa:Val,seq:tac)
so part of: sequence
location: complement(14373..14443)
location: region:14373-14443:-1
so has part: feature:14373-14443:-1:region

position:14443:-1
position: 14443
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14373-14443:-1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 108931
product: s-rRNA
note: 12S ribosomal RNA
so part of: sequence
location: complement(14443..15190)
location: region:14443-15190:-1
so has part: feature:14443-15190:-1:region

position:15190:-1
position: 15190
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14443-15190:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 108931
note: putative control region
so part of: sequence
location: 15191..17619
location: region:15191-17619:1
so has part: feature:15191-17619:1:region

position:15191:1
position: 15191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15191-17619:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 108931
so part of: sequence
location: 16244..17398
location: region:16244-17398:1
so has part: feature:16244-17398:1:region

position:16244:1
position: 16244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17398:1
position: 17398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16244-17398:1:region