Anabaenopsis circularis NIES-21 plasmid plasmid3 DNA, complete genome.
Bacteria; Cyanobacteriota; Cyanophyceae; Nostocales; Aphanizomenonaceae; Anabaenopsis.
Genome sequencing of cyanobaciteial culture collection at National Institute for Environmental Studies (NIES)
Submitted (23-JUN-2017) Contact:Yuu Hirose Toyohashi University of Technology, Department of Environmental and Life Sciences; Hibarigaoka-1-1 Tenpakucho, Toyohashi, Aichi 441-8122, Japan URL :http://mcc.nies.go.jp/ strainList.do?strainId=18&strainNumberEn=NIES-21
REFSEQ INFORMATION: The reference sequence was derived from\nAP018177.\nNBRP Genome Information Upgrading Program.: Genome sequencing of\ncyanobaciteial culture collection at National Institute for\nEnvironmental Studies (NIES).\n\nAnnotated using prokka 1.11 from http://www.vicbioinformatics.com.\nAnnotated at D-FAST https://dfast.nig.ac.jp\n\nAnnotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (released 2013). Information about the Pipeline can be\nfound here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: GS De Novo Assembler v. 2.9\nGenome Coverage :: 43x\nSequencing Technology :: Ilumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 09/28/2017 12:16:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS+\nAnnotation Software revision :: 4.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 6,068\nCDS (total) :: 5,955\nGenes (coding) :: 5,747\nCDS (coding) :: 5,747\nGenes (RNA) :: 113\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 97\nncRNAs :: 4\nPseudo Genes (total) :: 208\nPseudo Genes (ambiguous residues) :: 1 of 208\nPseudo Genes (frameshifted) :: 49 of 208\nPseudo Genes (incomplete) :: 144 of 208\nPseudo Genes (internal stop) :: 40 of 208\nPseudo Genes (multiple problems) :: 22 of 208\nCRISPR Arrays :: 6\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS+
Derived by automated computational analysis using gene prediction method: GeneMarkS+.
COORDINATES: similar to AA sequence:RefSeq:WP_002656206.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006625655.1
incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:PF13245.4,HMM:PF13361.4
COORDINATES: protein motif:HMM:PF00656.20
COORDINATES: protein motif:HMM:PF05419.10
COORDINATES: similar to AA sequence:RefSeq:WP_002737772.1
COORDINATES: similar to AA sequence:RefSeq:WP_015191290.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413367.1
COORDINATES: protein motif:HMM:PF00400.30,HMM:PF07676.10,HMM:PF08662.9
COORDINATES: similar to AA sequence:RefSeq:WP_017314558.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217779.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217784.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217786.1
COORDINATES: similar to AA sequence:RefSeq:WP_015083742.1
COORDINATES: similar to AA sequence:RefSeq:WP_009456239.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012408730.1
COORDINATES: similar to AA sequence:RefSeq:WP_017741662.1
COORDINATES: protein motif:HMM:PF14200.4
incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015179521.1
4a-hydroxytetrahydrobiopterin dehydratase
COORDINATES: similar to AA sequence:RefSeq:WP_015179522.1