Mesorhizobium amorphae CCNWGS0123 plasmid pM0123b.
type: Entry
definition: Mesorhizobium amorphae CCNWGS0123 plasmid pM0123b.
sequence version: NZ_CP015320.1
sequence date: 2023-04-27
sequence: sequence
division: CON
label: NZ_CP015320.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN04853078
keyword: RefSeq
source: Mesorhizobium amorphae CCNWGS0123
organism: Mesorhizobium amorphae CCNWGS0123
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Phyllobacteriaceae; Mesorhizobium.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP015320.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Celera Assembler v. 8.1\nGenome Coverage :: 134.86X\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/27/2023 03:22:01\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,961\nCDSs (total) :: 6,899\nGenes (coding) :: 6,671\nCDSs (with protein) :: 6,671\nGenes (RNA) :: 62\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 4\nPseudo Genes (total) :: 228\nCDSs (without protein) :: 228\nPseudo Genes (ambiguous residues) :: 0 of 228\nPseudo Genes (frameshifted) :: 146 of 228\nPseudo Genes (incomplete) :: 159 of 228\nPseudo Genes (internal stop) :: 39 of 228\nPseudo Genes (multiple problems) :: 96 of 228\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000155
sequence length: 17414
topology: linear
so has quality: SO_0000987
location: 1..17414
location: region:1-17414:1
RO_0002162: 1082933

NZ_CP015320
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN04853078
type: BioSample
SIO_000068: biosample

1
title: Resequencineg of Mesorhizobium amorphae CCNWGS0123 and comparative plasmidome of 23 symbiotic plasmids from Rhizobia
author: Wang, X.
author: Liu, D.
author: Luo, Y.
author: Huo, H.
author: Wei, G.
journal: Unpublished

2
title: Direct Submission
author: Wang, X.
author: Liu, D.
author: Luo, Y.
author: Huo, H.
author: Wei, G.
journal: Submitted (20-APR-2016) College of Life Science, Northwest A&F University, State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, 22 Xinong Road, Yangling 712100, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17414:1
position: 17414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-17414:1:source
so part of: sequence
organism: Mesorhizobium amorphae CCNWGS0123
mol type: genomic DNA
strain: CCNWGS0123
host: Robinia pseudoacacia
plasmid: pM0123b
country: China: Gansu
collection date: 2006-07-24

1082933
type: Taxonomy
SIO_000068: taxonomy

A6B35_RS29960
type: Gene
subclass of: SO_0000704
RO_0002162: 1082933
locus tag: A6B35_RS29960
old locus tag: A6B35_29900
pseudo: true
so part of: sequence
location: complement(<1..382)
location: region:1-382:-1
so has part: feature:1-382:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:382:-1
position: 382
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-382:-1:exon

A6B35_RS29960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1082933
locus tag: A6B35_RS29960
old locus tag: A6B35_29900
inference: COORDINATES: protein motif:HMM:NF012607.2
note: incomplete; too short partial abutting assembly gap; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: A6B35_RS29960
subclass of: SO_0000673
so part of: A6B35_RS29960
location: complement(<1..382)
location: region:1-382:-1
so has part: feature:1-382:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1-382:-1:exon

A6B35_RS29965
type: Gene
subclass of: SO_0000704
RO_0002162: 1082933
locus tag: A6B35_RS29965
old locus tag: A6B35_29905
so part of: sequence
location: complement(375..1139)
location: region:375-1139:-1
so has part: feature:375-1139:-1:exon
subclass of: SO_0000010

position:375:-1
position: 375
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1139:-1
position: 1139
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:375-1139:-1:exon

A6B35_RS29965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1082933
locus tag: A6B35_RS29965
old locus tag: A6B35_29905
inference: COORDINATES: protein motif:HMM:NF015962.2
GO function: GO:0050532 - 2-phosphosulfolactate phosphatase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 2-phosphosulfolactate phosphatase
translation: MKIKVAFLPTGPLAIAGDVCIVVDVIRATTALVGLFDAGSDRVFVGGFRSDVAKARAAVGENGIICAELDDGSTPLGFDHEPSPSLLSRLNLSGRSAMLATANGTPAILAAVREGAALILIGSLRNLDAVARRAFAEASSRNADITIICSGQLRNSRVAIEDSYCAGLIVAQFCELAKDDAVDLEDSASLAHGFTISQDSPVKVLLSSMTGRRFIGNCRQNDVEFCALINESTIVPVVAAQGEDSNHPVYLLDA
SIO_010081: A6B35_RS29965
subclass of: SO_0000673
so part of: A6B35_RS29965
location: complement(375..1139)
location: region:375-1139:-1
so has part: feature:375-1139:-1:exon

WP_006201725.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:375-1139:-1:exon

A6B35_RS29970
type: Gene
subclass of: SO_0000704
RO_0002162: 1082933
locus tag: A6B35_RS29970
old locus tag: A6B35_29910
so part of: sequence
location: complement(1136..2071)
location: region:1136-2071:-1
so has part: feature:1136-2071:-1:exon
subclass of: SO_0000010

position:1136:-1
position: 1136
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2071:-1
position: 2071
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1136-2071:-1:exon

A6B35_RS29970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1082933
locus tag: A6B35_RS29970
old locus tag: A6B35_29910
EC number: 2.7.1.15
inference: COORDINATES: protein motif:HMM:NF012515.2
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0019200 - carbohydrate kinase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribokinase
translation: MMPNCEVYVVGSYGVAFWIVGEVPAPGETLLGSGFAFGNGGKGSNQAIGAARLGARCKLLAGVGDDKFGDEALQLWRAEGVECSAVMQIVETPTMAGIIILDAAGENRIITDPGANARLTATDVESFAATWKSPGILLTQLEIPVETAARALAIGKARGLTTILNPAPGRALPKEVFADVDILTPNQSEARILLGLDADDRHADADLAARLRGLGVGHVVMTLGTDGALIAGPEGLTKIASYPVDVVDTTGAGDAFNGALAAGLASGLTLADAVRRGTAAGALAVTKKLVVPALPDESQISELMKTRTACA
SIO_010081: A6B35_RS29970
subclass of: SO_0000673
so part of: A6B35_RS29970
location: complement(1136..2071)
location: region:1136-2071:-1
so has part: feature:1136-2071:-1:exon

WP_006201724.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1136-2071:-1:exon

A6B35_RS29975
type: Gene
subclass of: SO_0000704
RO_0002162: 1082933
locus tag: A6B35_RS29975
old locus tag: A6B35_29915
so part of: sequence
location: complement(2068..2838)
location: region:2068-2838:-1
so has part: feature:2068-2838:-1:exon
subclass of: SO_0000010

position:2068:-1
position: 2068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2838:-1
position: 2838
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2068-2838:-1:exon

A6B35_RS29975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1082933
locus tag: A6B35_RS29975
old locus tag: A6B35_29915
inference: COORDINATES: protein motif:HMM:NF019322.2
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GntR family transcriptional regulator
translation: MIRPGRTPLHIQLADIIRSQIESGVFNAGDQLPTETELMKRHELSSSTVRQAVLALVGEGLLYRRAGKGTFVAKRHIGRDLLTFSGFSEEAEARGFRPGTRHVTVDWRPADASVATALDVPTDESVLTIERVRTIDDEVVAVETVSFVAAIGRHMEKLDLADTSFTKILEQHLGVSLARAKQEIRAGTARARLAKTLDVPSGTAVLQIDRIAFDATDQVIYFSSSSYRADRYIYTGWIERKSALIAEPRQLVSRMR
SIO_010081: A6B35_RS29975
subclass of: SO_0000673
so part of: A6B35_RS29975
location: complement(2068..2838)
location: region:2068-2838:-1
so has part: feature:2068-2838:-1:exon

WP_006201723.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2068-2838:-1:exon

A6B35_RS29980
type: Gene
subclass of: SO_0000704
RO_0002162: 1082933
locus tag: A6B35_RS29980
old locus tag: A6B35_29920
so part of: sequence
location: 3002..4285
location: region:3002-4285:1
so has part: feature:3002-4285:1:exon
subclass of: SO_0000010

position:3002:1
position: 3002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4285:1
position: 4285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3002-4285:1:exon

A6B35_RS29980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1082933
locus tag: A6B35_RS29980
old locus tag: A6B35_29920
inference: COORDINATES: protein motif:HMM:NF024808.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: extracellular solute-binding protein
translation: MGYRLGRRGFLTGMLGVSSLPLLGPLTAAAQAQTLRFFGWGDGTYYKGLFDAFEKVSGEKIAFEGVPFSDLQNTILQRFRTGDSGIDVFLVDPTYVPTFSKLGILGDLTSAFGEKSKGKLFPSDIQGANYIGKMLTMPMEESTQVLFFNKGLLAKAGVEAPGVSPDARMTWDKVIELAKKVQAAGAETGFGFEQVDRYYQLQVLPESLGGGPGVKGEDLLTVDVANDAWLQAGKWYGSIFADGVASRAPTKSQEMRDLFKAGRLAFLVGGPWNIAEFSKVEGLDYGAAPHPYFAGGKAVTPSESFHLGMAADTKNVDKALNFLNYAGLDKDGAVVAAGGSGLSANIGATQEILSRIPQQNPNLKGIDALMQYELANTAIRRPRTLGYLQLEELVTRAWSDIRNGNGAAETFAQLQSELERSFKRIPH
SIO_010081: A6B35_RS29980
subclass of: SO_0000673
so part of: A6B35_RS29980
location: 3002..4285
location: region:3002-4285:1
so has part: feature:3002-4285:1:exon

WP_167361634.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3002-4285:1:exon

A6B35_RS29985
type: Gene
subclass of: SO_0000704
RO_0002162: 1082933
locus tag: A6B35_RS29985
old locus tag: A6B35_29925
so part of: sequence
location: 4372..5205
location: region:4372-5205:1
so has part: feature:4372-5205:1:exon
subclass of: SO_0000010

position:4372:1
position: 4372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5205:1
position: 5205
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4372-5205:1:exon

A6B35_RS29985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1082933
locus tag: A6B35_RS29985
old locus tag: A6B35_29925
inference: COORDINATES: protein motif:HMM:NF012738.2
GO function: GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sugar ABC transporter permease
translation: MAPLPFLAPALFALLAFRLLPAGWLVQQSLSGPQGEFAGLDNFEFLFTAPSFANTLQATLTFVAVTVPLQTAIAFGLALLFAENSRIFSPLRVLVFLPVFVPSSVAAILWGAAYRPQGLANALLGSLGVSAQPFLSSPSQALMSITVMASWIGCGYWMMFLIGGLKDIPRDLYEAAAIDGAGKLSSLWHITIPLMRRPLAFVIVADTVAAFLLFAPIAILTRGGPGGSTQLVMFDVYQQAYFFNDVSLAAAEGLTLMVIMMVIVLIQFRLLSREKQL
SIO_010081: A6B35_RS29985
subclass of: SO_0000673
so part of: A6B35_RS29985
location: 4372..5205
location: region:4372-5205:1
so has part: feature:4372-5205:1:exon

WP_167361635.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4372-5205:1:exon

A6B35_RS29990
type: Gene
subclass of: SO_0000704
RO_0002162: 1082933
locus tag: A6B35_RS29990
old locus tag: A6B35_29930
so part of: sequence
location: 5202..6053
location: region:5202-6053:1
so has part: feature:5202-6053:1:exon
subclass of: SO_0000010

position:5202:1
position: 5202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6053:1
position: 6053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5202-6053:1:exon

A6B35_RS29990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1082933
locus tag: A6B35_RS29990
old locus tag: A6B35_29930
inference: COORDINATES: protein motif:HMM:NF012738.2
GO process: GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: carbohydrate ABC transporter permease
translation: MSAGETNSAGAGRIVQLLFGIAVAAGFLLPIVWLVAGSLRPGSEIFTSLDPLSIGTFIPPRPTLANFSSALGGAFRTGLINSIVVAASTVVMGLFVCAAAAFALSAMQWRGREVVFAMFVFSFLIPEEVVALPLSAIFTKIGLQNTYIALIIPFVGNGIVIFLLRQFFLAIPRSLIEAAQVDGAGWLRIFLQIFLPLSRPALIAAGLILFNTQWQAYLWPLLVTTREDMLVAPITLGLMAGHYSSDYGQIFAASTILSLIPAVILLGFQRFFTDSVAMSGVKE
SIO_010081: A6B35_RS29990
subclass of: SO_0000673
so part of: A6B35_RS29990
location: 5202..6053
location: region:5202-6053:1
so has part: feature:5202-6053:1:exon

WP_006203686.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5202-6053:1:exon

A6B35_RS36315
type: Gene
subclass of: SO_0000704
RO_0002162: 1082933
locus tag: A6B35_RS36315
so part of: sequence
location: 6261..6728
location: region:6261-6728:1
so has part: feature:6261-6728:1:exon
subclass of: SO_0000010

position:6261:1
position: 6261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6728:1
position: 6728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6261-6728:1:exon

A6B35_RS36315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1082933
locus tag: A6B35_RS36315
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSVKGARRRCLASIERGDEGDGAAAGRIGDFEAFGGLARRPPPVDIGEFVQQPMVGQAVDCVMAVRAGKVWDMVEASRVGLMRKTFVAVTVLRSRYALSLAGAHSSATHFALRATDTKATATSKISRRRLDTRTGPPFLGGDPCRCLARIVPSIS
SIO_010081: A6B35_RS36315
subclass of: SO_0000673
so part of: A6B35_RS36315
location: 6261..6728
location: region:6261-6728:1
so has part: feature:6261-6728:1:exon

WP_006203684.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6261-6728:1:exon

A6B35_RS30000
type: Gene
subclass of: SO_0000704
RO_0002162: 1082933
locus tag: A6B35_RS30000
old locus tag: A6B35_29940
so part of: sequence
location: 7461..7664
location: region:7461-7664:1
so has part: feature:7461-7664:1:exon
subclass of: SO_0000010

position:7461:1
position: 7461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7664:1
position: 7664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7461-7664:1:exon

A6B35_RS30000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1082933
locus tag: A6B35_RS30000
old locus tag: A6B35_29940
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010910596.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKRVEKARPFVPTEIHVGTVADEKGTLGILSIRTTEGLLDIALDRQAADTIMKAIGKIRAKLDPRGC
SIO_010081: A6B35_RS30000
subclass of: SO_0000673
so part of: A6B35_RS30000
location: 7461..7664
location: region:7461-7664:1
so has part: feature:7461-7664:1:exon

WP_006203682.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7461-7664:1:exon

A6B35_RS30005
type: Gene
subclass of: SO_0000704
RO_0002162: 1082933
locus tag: A6B35_RS30005
old locus tag: A6B35_29945
so part of: sequence
location: complement(7705..7929)
location: region:7705-7929:-1
so has part: feature:7705-7929:-1:exon
subclass of: SO_0000010

position:7705:-1
position: 7705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7929:-1
position: 7929
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7705-7929:-1:exon

A6B35_RS30005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1082933
locus tag: A6B35_RS30005
old locus tag: A6B35_29945
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDEQQAQSDAYRLERMDNGRATPLALFYTAAEALAVLGCMVDGYRLMLGSRQVWPASGGHDATSQVRHADRLAI
SIO_010081: A6B35_RS30005
subclass of: SO_0000673
so part of: A6B35_RS30005
location: complement(7705..7929)
location: region:7705-7929:-1
so has part: feature:7705-7929:-1:exon

WP_139032230.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7705-7929:-1:exon

A6B35_RS30010
type: Gene
subclass of: SO_0000704
RO_0002162: 1082933
locus tag: A6B35_RS30010
old locus tag: A6B35_29950
so part of: sequence
location: 8045..8590
location: region:8045-8590:1
so has part: feature:8045-8590:1:exon
subclass of: SO_0000010

position:8045:1
position: 8045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8590:1
position: 8590
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8045-8590:1:exon

A6B35_RS30010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1082933
locus tag: A6B35_RS30010
old locus tag: A6B35_29950
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006339565.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF309 domain-containing protein
translation: MSRPRLLPEKNFPGYAYLPGKNPHPVRDPLGHSYQSDAVTVVTVEESLSSNVFRWGIDLFNHGYYWEAHEAWEPLWHAAKCSAQHRLFFKGLILLAAAGVKIREGKRVAAARHATRAAALFRQVGLLPSRPFEAAIGMTPAALAVEAETATTFPAVLREPAAGQLPEPVYDFLLAPKSESG
SIO_010081: A6B35_RS30010
subclass of: SO_0000673
so part of: A6B35_RS30010
location: 8045..8590
location: region:8045-8590:1
so has part: feature:8045-8590:1:exon

WP_081482206.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8045-8590:1:exon

A6B35_RS30015
type: Gene
subclass of: SO_0000704
RO_0002162: 1082933
locus tag: A6B35_RS30015
old locus tag: A6B35_29955
so part of: sequence
location: 9099..9566
location: region:9099-9566:1
so has part: feature:9099-9566:1:exon
subclass of: SO_0000010

position:9099:1
position: 9099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9566:1
position: 9566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9099-9566:1:exon

A6B35_RS30015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1082933
locus tag: A6B35_RS30015
old locus tag: A6B35_29955
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019863481.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MucR family transcriptional regulator
translation: MAEGETSNAFVELTAEIVSAYVSNNPVPMGELASVIDRVYRSLNSLPSGAQSQPEAEPLRPAVPIRKSVTPDFIISLEDGKKFKSLKRHLATSYGMTPADYRARWSLPSDYPMVAPNYAATRSALAKKAGLGRKPPQQAAKGSSVQKSGKRKPKA
SIO_010081: A6B35_RS30015
subclass of: SO_0000673
so part of: A6B35_RS30015
location: 9099..9566
location: region:9099-9566:1
so has part: feature:9099-9566:1:exon

WP_006203678.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9099-9566:1:exon

A6B35_RS36320
type: Gene
subclass of: SO_0000704
RO_0002162: 1082933
locus tag: A6B35_RS36320
old locus tag: A6B35_29960
so part of: sequence
location: 9699..10397
location: region:9699-10397:1
so has part: feature:9699-10397:1:exon
subclass of: SO_0000010

position:9699:1
position: 9699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10397:1
position: 10397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9699-10397:1:exon

A6B35_RS36320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1082933
locus tag: A6B35_RS36320
old locus tag: A6B35_29960
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006329030.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MRRQTRPFIVEVKQRRGYQKRDNSIWGDMDLSAAFAETTRQLEEMDTSNRKFVDYNIVTFNAERLDQAKVEHHMAETEHTEPLNAATKGAANIEAPETKKKNRPPRNTKTDLKSPAPKNGASSEANKGVGSARLGRKMYSEEERVKKLSQIEKLLGGGATLKSAVTQAGTTEQTYYQWKKKAAVTAVAAVAAPASDDLKDLLALEEENKQLKNLLAERLRAENAELKRRLGL
SIO_010081: A6B35_RS36320
subclass of: SO_0000673
so part of: A6B35_RS36320
location: 9699..10397
location: region:9699-10397:1
so has part: feature:9699-10397:1:exon

WP_006203676.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9699-10397:1:exon

A6B35_RS30025
type: Gene
subclass of: SO_0000704
RO_0002162: 1082933
locus tag: A6B35_RS30025
old locus tag: A6B35_29965
pseudo: true
so part of: sequence
location: <10795..11085
location: region:10795-11085:1
so has part: feature:10795-11085:1:exon
subclass of: SO_0000010

position:10795:1
position: 10795
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:11085:1
position: 11085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10795-11085:1:exon

A6B35_RS30025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1082933
locus tag: A6B35_RS30025
old locus tag: A6B35_29965
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010915871.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: EAL domain-containing protein
SIO_010081: A6B35_RS30025
subclass of: SO_0000673
so part of: A6B35_RS30025
location: <10795..11085
location: region:10795-11085:1
so has part: feature:10795-11085:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10795-11085:1:exon

A6B35_RS30030
type: Gene
subclass of: SO_0000704
RO_0002162: 1082933
locus tag: A6B35_RS30030
old locus tag: A6B35_29970
so part of: sequence
location: complement(11234..11740)
location: region:11234-11740:-1
so has part: feature:11234-11740:-1:exon
subclass of: SO_0000010

position:11234:-1
position: 11234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11740:-1
position: 11740
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11234-11740:-1:exon

A6B35_RS30030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1082933
locus tag: A6B35_RS30030
old locus tag: A6B35_29970
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006339866.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MDNPLRVNIATVLEAERRQRRLRHQDMAQLFHTSPGKGLAYRTYIKTARRRNNVTLRTLDMMARSLRISIATLLTAKTDIEPWIHELGDQSIRRRLGAIINSERERRNLLCYQMAELIGVSEITFAKLERGAGNISVDTIAGIAKSLCLDPTTFLFQDQIACDPSPQT
SIO_010081: A6B35_RS30030
subclass of: SO_0000673
so part of: A6B35_RS30030
location: complement(11234..11740)
location: region:11234-11740:-1
so has part: feature:11234-11740:-1:exon

WP_006203674.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11234-11740:-1:exon

A6B35_RS30035
type: Gene
subclass of: SO_0000704
RO_0002162: 1082933
locus tag: A6B35_RS30035
old locus tag: A6B35_29975
so part of: sequence
location: 12134..12718
location: region:12134-12718:1
so has part: feature:12134-12718:1:exon
subclass of: SO_0000010

position:12134:1
position: 12134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12718:1
position: 12718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12134-12718:1:exon

A6B35_RS30035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1082933
locus tag: A6B35_RS30035
old locus tag: A6B35_29975
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006473455.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MMIGYARVSTQGQDLDQQRAALGLAGCIRLFEEKVSGAKRDRPELVKLLDHLCPGDVVTVTRLDRLARSTRDLLDIAERIGEAEAGLRSLAEPWADTTMPAGRMVLTVFAGVADFERSLIVERTSAGRIAARARGVRFGPSPALSADQITHARQLIAQDKPVTEVARLLKVHRATLYRALNSVEGCPAAPLSGE
SIO_010081: A6B35_RS30035
subclass of: SO_0000673
so part of: A6B35_RS30035
location: 12134..12718
location: region:12134-12718:1
so has part: feature:12134-12718:1:exon

WP_006203672.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12134-12718:1:exon

A6B35_RS30040
type: Gene
subclass of: SO_0000704
RO_0002162: 1082933
locus tag: A6B35_RS30040
old locus tag: A6B35_29980
so part of: sequence
location: 12787..13815
location: region:12787-13815:1
so has part: feature:12787-13815:1:exon
subclass of: SO_0000010

position:12787:1
position: 12787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13815:1
position: 13815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12787-13815:1:exon

A6B35_RS30040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1082933
locus tag: A6B35_RS30040
old locus tag: A6B35_29980
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012881261.1
GO function: GO:0016787 - hydrolase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dienelactone hydrolase family protein
translation: MFRYLARRYDRKHILRSLERQRRIHDKAIPFSCDGSDELAFNKISEGEAFFAPILPATPLGEEADSVIFQSDISTEDQANNTFECIVTDSGLKQHALVVFHHWYARSRYPAFSKYFAGKGITIIEATLPYHFGRASNDYSEEKLFNANLGRTVQSMRQAVLDGRKIVRWLYSQGYQKISVVGMCLGGTVAGLVAAQEQKVDKAVLMVSPGSPADLVWTAETMTALRGRIEPSMSLEGLRTAWGLIDLEKHLFGLTRPRLDLMFLLGKDDTVARPGASERLIELLAKCNLPPEVVRLNCGHSSIGMFPYNLIAARKVLRFLKETPTLSELWEVRGFRYDFSEV
SIO_010081: A6B35_RS30040
subclass of: SO_0000673
so part of: A6B35_RS30040
location: 12787..13815
location: region:12787-13815:1
so has part: feature:12787-13815:1:exon

WP_006203670.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12787-13815:1:exon

A6B35_RS36810
type: Gene
subclass of: SO_0000704
RO_0002162: 1082933
locus tag: A6B35_RS36810
pseudo: true
so part of: sequence
location: <13836..14069
location: region:13836-14069:1
so has part: feature:13836-14069:1:exon
subclass of: SO_0000010

position:13836:1
position: 13836
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:14069:1
position: 14069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13836-14069:1:exon

A6B35_RS36810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1082933
locus tag: A6B35_RS36810
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010399276.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: A6B35_RS36810
subclass of: SO_0000673
so part of: A6B35_RS36810
location: <13836..14069
location: region:13836-14069:1
so has part: feature:13836-14069:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13836-14069:1:exon

A6B35_RS30045
type: Gene
subclass of: SO_0000704
RO_0002162: 1082933
locus tag: A6B35_RS30045
old locus tag: A6B35_29985
so part of: sequence
location: complement(14174..17413)
location: region:14174-17413:-1
so has part: feature:14174-17413:-1:exon
subclass of: SO_0000010

position:14174:-1
position: 14174
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17413:-1
position: 17413
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14174-17413:-1:exon

A6B35_RS30045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1082933
locus tag: A6B35_RS30045
old locus tag: A6B35_29985
inference: COORDINATES: protein motif:HMM:NF024991.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MWNAAEAMEKRKDAQLARELVLALPANEELGHDDRVELARSFALEHFVSKGLAVQLDVHAPHGAESEGERANHHAHLLITTRRLDENGFAAKKARDLDPVIKRGGGRAIVAEGEAWGQLWRDHQNRYFAEQGLSIRVDATSAMPQEHIGPIRMRTPGAEANVRAEQIRRANEEAARDPEHVLAVLTRNQASFSEYDLDRHLKKHIQDEGERADVKGKVLGLDDVLALHDRETGERAGRWTTRAVRDQEILALADGRRVAGGGHRAIGVGDRDRVMSARELRADQLAAFDHATGSGGLKIIEGRAGTGKSFALGSIREAHEAAGYRVVGLAPTNAVAQTMKEDGFAHSSTVHAELFRLKNGRAQWDRRTLVVVDEAAMMDAKVTGEVLREARLSGAKVVLAGDDRQLGSIERGGLFTELKKDHGSAEITQITRQKVDWQREAAHDLSDGRFEDALRAFARNKAVVWTSKQDELREKLVERWAKDAASNPSASRFVFAYTNKDVDALNKDLRAVRRERGELGEDFVFTTKHGEAAFAVGDRVQFTDTLKGAGIYNGNAGTITGIERNFGRISVALDAAAGREGRKVEWYASEFSGFRHGYAGTIYKGQGKTLDHTYLMHTHHWRAASSYVALTRQRESATIFVATQTARDLRQLARQIGRNEIKAASVAYATRDELSAEQRAKLDEGRAAENARPALHVGQVQDGREKEERQMASVVEEARAGTLRTDPRTPEMQAGAIAGDAENQRQGTEHQGATPEPVVAQKSKKAGDSDRRGPADDRAVAGKTETRQSVPGARNEEGSPGTTADRPADVRVLIAAFQDVNAGGNRRDSLGRALDERSIAAAVSRDADVQRERDARPIYLETAYRDPIAAARRLDEIIARDGPTSAARRLSADTSLVGELRGREGLFASARAREEREAAHRATAAIGPNIVRTAEFENRAAQAYRGDVEKQMKADAVEVRDVSDRAKAALGKIAMAKDDRERAEAFKAVSADQQVSREIAAFRKSIEARFGEDGAREIARATASNKPFEHSSVPKSEQARLGEAAKLYSAARSGEVASRQQAETERLAARESQSTRLKQ
SIO_010081: A6B35_RS30045
subclass of: SO_0000673
so part of: A6B35_RS30045
location: complement(14174..17413)
location: region:14174-17413:-1
so has part: feature:14174-17413:-1:exon

WP_280517387.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14174-17413:-1:exon