Saccharomyces eubayanus strain FM1318 plasmid 2 micron, whole genome shotgun sequence.
type: Entry
definition: Saccharomyces eubayanus strain FM1318 plasmid 2 micron, whole genome shotgun sequence.
sequence version: NW_017264705.1
sequence date: 2017-09-27
sequence: sequence
division: CON
label: NW_017264705.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA342694
dblink: SAMN02716114
keyword: WGS
keyword: RefSeq
source: Saccharomyces eubayanus
organism: Saccharomyces eubayanus
taxonomy: Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces.
reference: 1
references: 26269586
reference: 2
reference: 3
comment: PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CM003592.\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2014\nAssembly Method :: AllPaths v. r44837\nAssembly Name :: SEUB3.0\nGenome Coverage :: 681.6x\nSequencing Technology :: Illumina HiSeq; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 6161
topology: circular
so has quality: SO_0000988
location: 1..6161
location: region:1-6161:1
RO_0002162: 1080349

NW_017264705
type: RefSeq
SIO_000068: refseq

PRJNA342694
type: BioProject
SIO_000068: bioproject

SAMN02716114
type: BioSample
SIO_000068: biosample

1
title: The Genome Sequence of Saccharomyces eubayanus and the Domestication of Lager-Brewing Yeasts
author: Baker, E.
author: Wang, B.
author: Bellora, N.
author: Peris, D.
author: Hulfachor, A.B.
author: Koshalek, J.A.
author: Adams, M.
author: Libkind, D.
author: Hittinger, C.T.
journal: Mol. Biol. Evol.
volume: 32
issue: 11
pages: 2818-2831
year: 2015
pubmed: 26269586

26269586
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (27-SEP-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Wang, B.
author: Baker, E.
author: Libkind, D.
author: Goncalves, P.
author: Sampaio, J.P.
author: Hittinger, C.T.
journal: Submitted (05-MAY-2015) Laboratory of Genetics, University of Wisconsin-Madison, 425-G Henry Mall, 2434 Genetics/Biotechnology Center, Madison, WI 53706-1580, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6161:1
position: 6161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-6161:1:source
so part of: sequence
organism: Saccharomyces eubayanus
mol type: genomic DNA
strain: FM1318
isolation source: Nothofagus dombeyi infected by Cyttaria hariotii
host: Cyttaria hariotii
plasmid: 2 micron
country: Argentina: Nahuel Huapi, Patagonia
lat lon: 41.3569 S 71.5157 W
altitude: 906 m
collection date: 2006
collected by: R. Ulloa, Diego Libkind
identified by: R. Ulloa, Diego Libkind

1080349
type: Taxonomy
SIO_000068: taxonomy

DI49_5675
type: Gene
subclass of: SO_0000704
RO_0002162: 1080349
locus tag: DI49_5675
note: SEUB0R0010
so part of: sequence
location: <315..>1586
location: region:315-1586:1
so has part: feature:315-1586:1:exon
subclass of: SO_0000010

28934811
type: Gene
SIO_000068: ncbigene

position:315:1
position: 315
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:1586:1
position: 1586
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:315-1586:1:exon

DI49_5675
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 1080349
locus tag: DI49_5675
product: hypothetical protein
SIO_010081: DI49_5675
subclass of: SO_0000673
so part of: DI49_5675
location: <315..>1586
location: region:315-1586:1
so has part: feature:315-1586:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:315-1586:1:exon

DI49_5675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1080349
locus tag: DI49_5675
note: saccharomyces cerevisiae ortholog: R0010W
codon start: 1
product: hypothetical protein
translation: MSKFDILYKTPPKVLVSQFIARFGEPSGEKLASCAAELTYLCWMITHNGAAIKRATFLSYNTIISKSLQYDVVKKTLQFKYKTQKAAILQASLQKLIPGWEFTIIPYYGQKEQSDVTDIVSNLQLQFESPEEVEKGNSHSKKMLKALLNEDESVWNIAEKILDSFEYTSRYTKTKAQYQFLFLATFVNCARFSDIKNVDPQSFKLIQNEYLGVIIQCLVTETKTGVSRHIYFFSAKGRLDSLVYLDEFLRYSEPVPKRINKTSSSSGNKQQYQLLKDNLVRSYNKALKSNAPYSILAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKRASVVARTTYTHQVTAIPDHYFALVSGYYGYDQISKEMIPWKDETNPIEEWRHIEQLKGSTGGSTRYAAWNGIIAQEVLDYLSSYISRRI
SIO_010081: DI49_5675
subclass of: SO_0000673
so part of: DI49_5675
location: 315..1586
location: region:315-1586:1
so has part: feature:315-1586:1:exon

XP_022467367.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:315-1586:1:exon

DI49_5676
type: Gene
subclass of: SO_0000704
RO_0002162: 1080349
locus tag: DI49_5676
note: SEUB0R0020
so part of: sequence
location: complement(<1958..>3103)
location: region:1958-3103:-1
so has part: feature:1958-3103:-1:exon
subclass of: SO_0000010

28934812
type: Gene
SIO_000068: ncbigene

position:1958:-1
position: 1958
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:3103:-1
position: 3103
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1958-3103:-1:exon

DI49_5676
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 1080349
locus tag: DI49_5676
product: hypothetical protein
SIO_010081: DI49_5676
subclass of: SO_0000673
so part of: DI49_5676
location: complement(<1958..>3103)
location: region:1958-3103:-1
so has part: feature:1958-3103:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1958-3103:-1:exon

DI49_5676
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1080349
locus tag: DI49_5676
note: saccharomyces cerevisiae ortholog: R0020C
codon start: 1
product: hypothetical protein
translation: MNGERLLACIKQCIMPSFQPMIYNDATDVIETPRGKFSVPSDYREHKPLAFAFVGHLLNTDSTPLIEKGVDWPDPAVVYNTIVDRIINHPELAHFVSVGFMSVLKDAIGQGLDPSVKDTLGRRGKGIRRPKGVYFKYMESSYVNNKVTAFFSFLRDYQKIVAEYHNNTKFVLQFSCKAYWPSGPNFAALKNVIRNSIVHEYISRYVEDKQDKNHIEEPADNLEEGQEVPVEEQPSNGVSDVQDESNSLTEQDVKADEELWSDVDLLCMAWQSETEDEAEAKELAERIVGKNQRIASLKLRRAKFKNILYHILKELIQSQGTVKVYRGSSFTHHSIKVSLHYEEAHITAVWVYLTVKFGDNWEPIDVEVEFRCKFKEQKSNK
SIO_010081: DI49_5676
subclass of: SO_0000673
so part of: DI49_5676
location: complement(1958..3103)
location: region:1958-3103:-1
so has part: feature:1958-3103:-1:exon

XP_022467368.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1958-3103:-1:exon

DI49_5677
type: Gene
subclass of: SO_0000704
RO_0002162: 1080349
locus tag: DI49_5677
note: SEUB0R0030
so part of: sequence
location: <3363..>3896
location: region:3363-3896:1
so has part: feature:3363-3896:1:exon
subclass of: SO_0000010

28934813
type: Gene
SIO_000068: ncbigene

position:3363:1
position: 3363
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

position:3896:1
position: 3896
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3363-3896:1:exon

DI49_5677
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 1080349
locus tag: DI49_5677
product: hypothetical protein
SIO_010081: DI49_5677
subclass of: SO_0000673
so part of: DI49_5677
location: <3363..>3896
location: region:3363-3896:1
so has part: feature:3363-3896:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3363-3896:1:exon

DI49_5677
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1080349
locus tag: DI49_5677
note: saccharomyces cerevisiae ortholog: R0030W
codon start: 1
product: hypothetical protein
translation: MPIETPIDCIELLATQCFLPKLTDSEVSNFKDACSKENDIIKLALKVPYAVNYNDILHILYDTLPFKSQSFSETLPLFYYSTDSVRQRQCDLRFYLRDAINLATPRKRSEMRNALTQWLPSLLSDVTLQELNDIRMSVEEIQPNIRQVVLENYPHTRYPSLNFERPDLGLQPEVDKV
SIO_010081: DI49_5677
subclass of: SO_0000673
so part of: DI49_5677
location: 3363..3896
location: region:3363-3896:1
so has part: feature:3363-3896:1:exon

XP_022467369.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3363-3896:1:exon

DI49_5678
type: Gene
subclass of: SO_0000704
RO_0002162: 1080349
locus tag: DI49_5678
note: SEUB0R0040
so part of: sequence
location: complement(<5224..>6108)
location: region:5224-6108:-1
so has part: feature:5224-6108:-1:exon
subclass of: SO_0000010

28934814
type: Gene
SIO_000068: ncbigene

position:5224:-1
position: 5224
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

position:6108:-1
position: 6108
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5224-6108:-1:exon

DI49_5678
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 1080349
locus tag: DI49_5678
product: hypothetical protein
SIO_010081: DI49_5678
subclass of: SO_0000673
so part of: DI49_5678
location: complement(<5224..>6108)
location: region:5224-6108:-1
so has part: feature:5224-6108:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5224-6108:-1:exon

DI49_5678
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1080349
locus tag: DI49_5678
note: saccharomyces cerevisiae ortholog: R0040C
codon start: 1
product: hypothetical protein
translation: MEDIEAAKNLTVKVQTAYSVWDVCRLLVNLIAPDVDIDIESKRMSDQLLFPGYIVKPMESLTSGRPIGVDPGSQSAPNTLDSSTEVTMPASEIVKSRFDILGNSMLSSQAASEAALQLMLQNNTLLSDRKQLRSSIATIMKSLPNEAKKTAMEIVMKTVDCAELLVPPVPTNEEVMNLLSVVTELLTLVEPDRRAALMQDLPIPKSLRGVFNSVNTLVVQQHLRQGKDSEDRSVEVSSTNQVNEVPSKRTRSKDANARQTYKAATEGARGTPAKSRGAAKRGRGRKPRKSLRTA
SIO_010081: DI49_5678
subclass of: SO_0000673
so part of: DI49_5678
location: complement(5224..6108)
location: region:5224-6108:-1
so has part: feature:5224-6108:-1:exon

XP_022467370.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5224-6108:-1:exon