Paracoccus zhejiangensis strain J6 plasmid pPZ04, complete sequence.
type: Entry
definition: Paracoccus zhejiangensis strain J6 plasmid pPZ04, complete sequence.
sequence version: NZ_CP025434.1
sequence date: 2023-01-01
sequence: sequence
division: CON
label: NZ_CP025434.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN08166682
keyword: RefSeq
source: Paracoccus zhejiangensis
organism: Paracoccus zhejiangensis
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Paracoccus.
reference: 1
references: 23653121
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP025434.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 09-NOV-2017\nAssembly Method :: RS HGAP Assembly v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 237.0x\nSequencing Technology :: PacBio; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 01/01/2023 02:50:49\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,516\nCDSs (total) :: 4,460\nGenes (coding) :: 4,382\nCDSs (with protein) :: 4,382\nGenes (RNA) :: 56\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 3\nPseudo Genes (total) :: 78\nCDSs (without protein) :: 78\nPseudo Genes (ambiguous residues) :: 0 of 78\nPseudo Genes (frameshifted) :: 33 of 78\nPseudo Genes (incomplete) :: 64 of 78\nPseudo Genes (internal stop) :: 17 of 78\nPseudo Genes (multiple problems) :: 28 of 78\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 20283
topology: circular
so has quality: SO_0000988
location: 1..20283
location: region:1-20283:1
RO_0002162: 1077935

NZ_CP025434
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN08166682
type: BioSample
SIO_000068: biosample

1
title: Paracoccus zhejiangensis sp. nov., isolated from activated sludge in wastewater-treatment system
author: Wu, Z.G.
author: Zhang, D.F.
author: Liu, Y.L.
author: Wang, F.
author: Jiang, X.
author: Li, C.
author: Li, S.P.
author: Hong, Q.
author: Li, W.J.
journal: Antonie Van Leeuwenhoek
volume: 104
issue: 1
pages: 123-128
year: 2013
pubmed: 23653121

23653121
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Lee, J.-Y.
journal: Submitted (16-DEC-2017) Dept. of biology, Kyung Hee University, 1 HoeGi-Dong, Dongdaemun-gu, Seoul 02447, Korea, Republic of

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20283:1
position: 20283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-20283:1:source
so part of: sequence
organism: Paracoccus zhejiangensis
mol type: genomic DNA
strain: J6
isolation source: sludge
type material: type strain of Paracoccus zhejiangensis
plasmid: pPZ04
country: South Korea
collection date: 2015-03-01

1077935
type: Taxonomy
SIO_000068: taxonomy

CX676_RS22320
type: Gene
subclass of: SO_0000704
RO_0002162: 1077935
locus tag: CX676_RS22320
old locus tag: CX676_22315
so part of: sequence
location: complement(join(19838..20283,1..1123))
location: region:1-20283:-1
so has part: feature:1-1123:-1:exon
so has part: feature:19838-20283:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20283:-1
position: 20283
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-1123:-1:exon

position:1123:-1
position: 1123
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:19838-20283:-1:exon

position:19838:-1
position: 19838
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CX676_RS22320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1077935
locus tag: CX676_RS22320
old locus tag: CX676_22315
EC number: 2.4.-.-
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: glycosyltransferase family 4 protein
translation: MASPDPARQRHVAVLVHNDVLKDARVLKEVETLGAAGYVVDVIGASPKPGTYPATVPGARSLTIVDIAPKSLQGRFYSLADKIYPLVLDYAILLVAVLPVFFLLALPQTPQGFARALVLVSPFVLLGIRSLKTNSSDRKRIARLAMAVFALTLIIVGGYGIVSGAIGLVLFMLVFSALFAVQRLELNLRRVLFRVVNGLRDRRLSSHRKERYHAIARALADRVDPTRHEIVHCHDIIALIAGTRLKKRHSKLFLIWDAHEFYEEVASGTEEDRLLMREVIGDAQGYVDGFVTISESFRDIYARDYPRLPPAQVVMNATRNAGAVEDDGRLHRAAGLSPDRKILLFQGGFSPHRGIGHLIEAAADLPQPWSIVMMGWGKLEPEISAAIDQLTDPDHPEKAPLAMIPAAPQDELPYWSAGAALGAIPYENVGMNHLYCTPNKLWEFPNAGVPILATGLVEMERIISEWGTGFLLPRDFGADDILKQLEVITPADLDQARANCRRFSDAMSWDRFEDALLRAYPA
SIO_010081: CX676_RS22320
subclass of: SO_0000673
so part of: CX676_RS22320
location: complement(join(19838..20283,1..1123))
location: region:1-20283:-1
so has part: feature:1-1123:-1:exon
so has part: feature:19838-20283:-1:exon

WP_101754989.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-1123:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:19838-20283:-1:exon

CX676_RS22325
type: Gene
subclass of: SO_0000704
RO_0002162: 1077935
locus tag: CX676_RS22325
old locus tag: CX676_22320
so part of: sequence
location: complement(1123..2241)
location: region:1123-2241:-1
so has part: feature:1123-2241:-1:exon
subclass of: SO_0000010

position:2241:-1
position: 2241
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1123-2241:-1:exon

CX676_RS22325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1077935
locus tag: CX676_RS22325
old locus tag: CX676_22320
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010232994.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DegT/DnrJ/EryC1/StrS family aminotransferase
translation: MQFIDLGAQQARIKDRIDTRIQAVLAHGAYIMGPEVKQFEAGLTALSGVKHALGCANGTDALQLALMALKAGPGDAVFCPTFTFAATAEIVPLFGATPVFVDVQEESFNIDPASLERAIAAAKEAGLTPRGIIPVDLFGLPADYDAIEEIAEREGLWIVADSAQGYGATYRGRRTGSIGTIATTSFFPAKPLGCYGDGGAVFTDDDDLAKLMDSLRVHGKGGDKYDNVRIGLNSRLDTLQAAILLEKLAIYEDEIAARQRVAQRYQAGLSNVIATPHVPDDCQSVWAQYTLKARDGAERDRLMAALKDAGIPSVVYYPRPLHTQTAYASYPKDPAGLPVAEDLAGRVFSLPMHPYLSEADQDRVIDTIRKAI
SIO_010081: CX676_RS22325
subclass of: SO_0000673
so part of: CX676_RS22325
location: complement(1123..2241)
location: region:1123-2241:-1
so has part: feature:1123-2241:-1:exon

WP_101754976.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1123-2241:-1:exon

CX676_RS22330
type: Gene
subclass of: SO_0000704
RO_0002162: 1077935
locus tag: CX676_RS22330
old locus tag: CX676_22325
so part of: sequence
location: complement(2251..3156)
location: region:2251-3156:-1
so has part: feature:2251-3156:-1:exon
subclass of: SO_0000010

position:2251:-1
position: 2251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3156:-1
position: 3156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2251-3156:-1:exon

CX676_RS22330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1077935
locus tag: CX676_RS22330
old locus tag: CX676_22325
inference: COORDINATES: protein motif:HMM:NF012360.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFTGNRIALSELAPILGLDVRRDAEIACVGKVPTRLDGRLVPCGKQNHLDEAAGETGIAAFVVPADLADAVPGGAGVVIAEKPVVTAMAIHEHLAAMPGFLWTDFDSRIDPSAIIMPGAYVPERNVSIGAGSVIGPNAVIFERSIIGAGCQIGATCVIGMEAFEQKSGASPKALLRQAGGVRIGDHVTLLPGCTVARSTFGGFNQIGNETKIDAQTYIAHDCLIGQRVTICACCDISGRVVIGDDAYLGPNCTISNGLRIGTRSTVTLGAAVTRDVPDDSRVTGNFAMPHDRWLNILRDYR
SIO_010081: CX676_RS22330
subclass of: SO_0000673
so part of: CX676_RS22330
location: complement(2251..3156)
location: region:2251-3156:-1
so has part: feature:2251-3156:-1:exon

WP_101754977.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2251-3156:-1:exon

CX676_RS22335
type: Gene
subclass of: SO_0000704
RO_0002162: 1077935
locus tag: CX676_RS22335
old locus tag: CX676_22330
so part of: sequence
location: complement(3156..4124)
location: region:3156-4124:-1
so has part: feature:3156-4124:-1:exon
subclass of: SO_0000010

position:4124:-1
position: 4124
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3156-4124:-1:exon

CX676_RS22335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1077935
locus tag: CX676_RS22335
old locus tag: CX676_22330
inference: COORDINATES: protein motif:HMM:NF013567.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Gfo/Idh/MocA family oxidoreductase
translation: MAEIRIAQVGCGHWGKNLTRNFAQIGALGAIVDPHAPTAEKMSAEFGVPARTLDQVLADPAIQGVAFATPAETHAAGAIAALQAGKHVYVEKPLALTMADCRAMIDTARDTGRILMVGHLLQYHPIFAALRDLVGAGDIGTLRYVYSNRLSLGKFRTEEDVLWSFAPHDISMLLALANSPVSHVSAQGAAFVTPNIADMATVQIGFENGLRGHVFTSWCHPFKEQRLVAVGDAGMAVFDDTLPDWGQKLAIYRHRIDTAGPVPVPHKAEAEFIDVPQGEPLRTECEHFVAAIRDGRQPRTDGAEGLAVVEVLERASAAMSAG
SIO_010081: CX676_RS22335
subclass of: SO_0000673
so part of: CX676_RS22335
location: complement(3156..4124)
location: region:3156-4124:-1
so has part: feature:3156-4124:-1:exon

WP_101754978.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3156-4124:-1:exon

CX676_RS22340
type: Gene
subclass of: SO_0000704
RO_0002162: 1077935
locus tag: CX676_RS22340
old locus tag: CX676_22335
so part of: sequence
location: complement(4143..5450)
location: region:4143-5450:-1
so has part: feature:4143-5450:-1:exon
subclass of: SO_0000010

position:4143:-1
position: 4143
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5450:-1
position: 5450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4143-5450:-1:exon

CX676_RS22340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1077935
locus tag: CX676_RS22340
old locus tag: CX676_22335
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018115366.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: nucleotide sugar dehydrogenase
translation: MPADFVARVTTKQARVGILGLGYVGIPLALRIVETGLPVLGFDIDAGRVEELNAGRSPIKHISNASIAGMRAGGFEATTDFSRAGECDALIICVPTPLNKYREPDLSFIVATMDQIAPSLRAGQLLSLESTTWPGTTDEVLAPYVEKAGLTPGQDFFLVYSPEREDPGNPNFDTRTIPKVVGGMTPGCLTAGLALYGHFIDKVVSVSSTRAAEMVKLLENIHRAVNIGLVNELKLVTDRMGMDIFEIVDAAATKPFGFTAFYPGPGIGGHCIPIDPFYLTWKAREYGLHTRFIELAGEINAGMPDYVVSRLVSALNARGKSLSGARVLALGIAYKRDVDDMRESPSVFVMERLRDWGADVSYSDSNVPVFPKMREHHFDLGSVDLTPEVVAGFDAVVLLTDHSDFDYDMIRDNAQLLIDTRGKFRGQSAENLARA
SIO_010081: CX676_RS22340
subclass of: SO_0000673
so part of: CX676_RS22340
location: complement(4143..5450)
location: region:4143-5450:-1
so has part: feature:4143-5450:-1:exon

WP_101754979.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4143-5450:-1:exon

CX676_RS22345
type: Gene
subclass of: SO_0000704
RO_0002162: 1077935
gene: repC
locus tag: CX676_RS22345
old locus tag: CX676_22340
so part of: sequence
location: complement(5995..7155)
location: region:5995-7155:-1
so has part: feature:5995-7155:-1:exon
subclass of: SO_0000010

position:5995:-1
position: 5995
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7155:-1
position: 7155
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5995-7155:-1:exon

CX676_RS22345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1077935
gene: repC
locus tag: CX676_RS22345
old locus tag: CX676_22340
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002724985.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid replication protein RepC
translation: MRHISMTPFGRQPVTAGLLATQALAEAPALQAEPDKWALLRDLTTARASFAVSDRDLVVLSALLSFHPGKVLADDEKLIVFPSNAALSDRAHGMAESTLRRHLAALTAAGLILRRDSPNGKRYATRDRSGVLDRAFGFDLRPLLVLSPRIAAAAETARRDALALRRLREMVVVRLRDASKLIVWAEETGGRVPDGLLQAVASLQRALRRKLDIGIMAQFAAEADILLDRARALIKTEKMGGSDADNERHQQNSNPDSSESDPCCEQQKATPTQRAEPAIPLALVLKAAPDIRDYATEGIHDWRALVAVANFVRPMLGISADAWTQARQSMGDAVAAVTLACILQRAETIACPGGYLRALTEKAGQGAFSPGPMVMALLRAENERAV
SIO_010081: CX676_RS22345
subclass of: SO_0000673
so part of: CX676_RS22345
location: complement(5995..7155)
location: region:5995-7155:-1
so has part: feature:5995-7155:-1:exon

WP_101754980.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5995-7155:-1:exon

CX676_RS22350
type: Gene
subclass of: SO_0000704
RO_0002162: 1077935
gene: repB
locus tag: CX676_RS22350
old locus tag: CX676_22345
so part of: sequence
location: complement(7343..8257)
location: region:7343-8257:-1
so has part: feature:7343-8257:-1:exon
subclass of: SO_0000010

position:7343:-1
position: 7343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8257:-1
position: 8257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7343-8257:-1:exon

CX676_RS22350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1077935
gene: repB
locus tag: CX676_RS22350
old locus tag: CX676_22345
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009804006.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid partitioning protein RepB
translation: MARKNLLQGLMDSAPAAPDEDTPALPRYERGAIGAVSKSIDDLKRRAIIDVAPDMIDNAGLKDRLDEDPEGLAALTKSIRDYGQQVPVLLRHSPNYEGRYDVVYGRRRVAALKALRQPVKAMVRTLNDRDLVIAQGQENTARKDLSFIEKALFAQQMVKAGYDRKIVCDALSIDKTVISRMLTVADTLPVKLIQAIGSAPSVGRDRWLSLVKRARGGDLAALARAARGDSSDQRFEAVFAAAAPARSVLPGPRKLTGLSGQVLGETRRGKTKTVIELSGEGREFGEWLVDHLEEVHRNWLESNG
SIO_010081: CX676_RS22350
subclass of: SO_0000673
so part of: CX676_RS22350
location: complement(7343..8257)
location: region:7343-8257:-1
so has part: feature:7343-8257:-1:exon

WP_101754991.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7343-8257:-1:exon

CX676_RS22355
type: Gene
subclass of: SO_0000704
RO_0002162: 1077935
gene: repA
locus tag: CX676_RS22355
old locus tag: CX676_22350
so part of: sequence
location: complement(8257..9444)
location: region:8257-9444:-1
so has part: feature:8257-9444:-1:exon
subclass of: SO_0000010

position:9444:-1
position: 9444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8257-9444:-1:exon

CX676_RS22355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1077935
gene: repA
locus tag: CX676_RS22355
old locus tag: CX676_22350
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011331263.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid partitioning protein RepA
translation: MQPKMRIDKLVGGHALALSERLQAHRAQLFPPDARRELRKFTSGEVADLLGVKDAYLRKLDLEGKGPSPETRAGGRRYYSPGDILALRQTLEKGAKTPGTYLPGRREGDHLQVITVINFKGGSGKTTTAAHLAQKLALDGYRVLAIDLDPQASLSALHGVQPEFDLGDGGTIYDAIRYNDPLPIRGMIQKTYFTNLDLIPGNLELMEFEHDTPRALAERSGKFFFTRIGDALAEVESDYDVVVIDCPPQLGFLTMSALSAATAILVTVHPQMLDVMSMCQFLLMTSNLLGVVAEAGGDMDYDWMRYVITRYEPGDGPQNQMVSFMRSMFGDHVLNHSVLKSTAISDAGITKQTLYEVEKSAFTRATYERALESLNAVNGEIEGLVQAAWGRKGTS
SIO_010081: CX676_RS22355
subclass of: SO_0000673
so part of: CX676_RS22355
location: complement(8257..9444)
location: region:8257-9444:-1
so has part: feature:8257-9444:-1:exon

WP_101754990.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8257-9444:-1:exon

CX676_RS22360
type: Gene
subclass of: SO_0000704
RO_0002162: 1077935
locus tag: CX676_RS22360
old locus tag: CX676_22355
so part of: sequence
location: complement(9670..10389)
location: region:9670-10389:-1
so has part: feature:9670-10389:-1:exon
subclass of: SO_0000010

position:9670:-1
position: 9670
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10389:-1
position: 10389
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9670-10389:-1:exon

CX676_RS22360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1077935
locus tag: CX676_RS22360
old locus tag: CX676_22355
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011386858.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MLFVAYLRVSTDRQGKSGLGLEAQRAAVLDHVAGKGKIAAEYVEIESGKKNDRPQLARALAEAKRIGAVLLIAKLDRLARNVAFIANLLEAGVEIAAADMPEANRFLLHVMAAVAEHEAQAISDRTRAALAAAKARGVALGWSMPGRAGEQRQAARKGAECNARKADQHAANVLPVIRQIAARGASLRQIAAELNMRGIRTARGGLWYAATVRNAMARENGIAAQAGCAGAAKWVCSSP
SIO_010081: CX676_RS22360
subclass of: SO_0000673
so part of: CX676_RS22360
location: complement(9670..10389)
location: region:9670-10389:-1
so has part: feature:9670-10389:-1:exon

WP_101754981.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9670-10389:-1:exon

CX676_RS22365
type: Gene
subclass of: SO_0000704
RO_0002162: 1077935
locus tag: CX676_RS22365
old locus tag: CX676_22360
so part of: sequence
location: 10318..11538
location: region:10318-11538:1
so has part: feature:10318-11538:1:exon
subclass of: SO_0000010

position:10318:1
position: 10318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11538:1
position: 11538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10318-11538:1:exon

CX676_RS22365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1077935
locus tag: CX676_RS22365
old locus tag: CX676_22360
EC number: 2.4.-.-
inference: COORDINATES: protein motif:HMM:NF012745.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyltransferase family 2 protein
translation: MGFQAEAALALAIRANPQIGDKEHERPSLNISPRRSESIRCINTLRPLCFYTSLRISVILRSRHRTTHMALPCETEARGLALGEARTHPNPSPGPTEAQILLTSILIPVFNEADHLADCLGSIRAMPDCEIEVILVDDHSTDATYQIACDIAAARGDLPITVLRNRGQGKAAALNLAYRHAKGDGFVLLAGDDLLVSEVLPARIAAVAGPQPTVALCRYRSFSDIPAHDGTLFPRPGREDHLAGGATSFNRAFAELYFPIPEELPNEDSWLRAIAILFCLPVTFIDRIGLHYRIHDRNSTGPSLDFALTNEGLARRHAAFSLALERFDGATAAGRDRLATLVQAEARRSAGDWLGVLRLKHLPAGDRSIFLANSTPWLFWIKGQLLQILNRRNRRSRSAGRNVTPR
SIO_010081: CX676_RS22365
subclass of: SO_0000673
so part of: CX676_RS22365
location: 10318..11538
location: region:10318-11538:1
so has part: feature:10318-11538:1:exon

WP_157936057.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10318-11538:1:exon

CX676_RS22370
type: Gene
subclass of: SO_0000704
RO_0002162: 1077935
locus tag: CX676_RS22370
old locus tag: CX676_22365
so part of: sequence
location: 11894..13039
location: region:11894-13039:1
so has part: feature:11894-13039:1:exon
subclass of: SO_0000010

position:11894:1
position: 11894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13039:1
position: 13039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11894-13039:1:exon

CX676_RS22370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1077935
locus tag: CX676_RS22370
old locus tag: CX676_22365
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQMIGTPVVADKAPKSRRRRYLALAPALLVVGVILPVAALAAYLYLIAADQYDSKAAFSIRSEQSGGVAQGFLGAIASVGGTGSAQDTDLLFDYIQSQAIVKTVDAKLDLRHLYREREGDWAFSLAPDAPIEDVVHYWNRMVSVSNESRDGILRVEVRAFDPEDAQQILKEILAASSDLINQLSQDARADSLRLSGDLVTETRADLQEIRRKLTDFRRENKIITPELEAESRSTLIATLQGKIAEAVIERDSILAYSNENDPRVQNIDIRLDSLRAQMEQERIDLSQSDKTADLDVYGVYESLLLEQEMLNVAYGQALANQASAHAETRRQARYVTVHVPPSFAEVPLYPQRLKILLITTVILLLIWSIVTVFYKNTRDKF
SIO_010081: CX676_RS22370
subclass of: SO_0000673
so part of: CX676_RS22370
location: 11894..13039
location: region:11894-13039:1
so has part: feature:11894-13039:1:exon

WP_157936058.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11894-13039:1:exon

CX676_RS23170
type: Gene
subclass of: SO_0000704
RO_0002162: 1077935
locus tag: CX676_RS23170
pseudo: true
so part of: sequence
location: 13057..>13713
location: region:13057-13713:1
so has part: feature:13057-13713:1:exon
subclass of: SO_0000010

position:13057:1
position: 13057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13713:1
position: 13713
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13057-13713:1:exon

CX676_RS23170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1077935
locus tag: CX676_RS23170
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017929931.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ABC transporter ATP-binding protein
SIO_010081: CX676_RS23170
subclass of: SO_0000673
so part of: CX676_RS23170
location: 13057..>13713
location: region:13057-13713:1
so has part: feature:13057-13713:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13057-13713:1:exon

CX676_RS23175
type: Gene
subclass of: SO_0000704
RO_0002162: 1077935
locus tag: CX676_RS23175
so part of: sequence
location: 13702..14391
location: region:13702-14391:1
so has part: feature:13702-14391:1:exon
subclass of: SO_0000010

position:13702:1
position: 13702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14391:1
position: 14391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13702-14391:1:exon

CX676_RS23175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1077935
locus tag: CX676_RS23175
inference: COORDINATES: protein motif:HMM:NF025910.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tetratricopeptide repeat protein
translation: MDNAFVAEIEGGEGNAELLYREAKKRYQNADYLRAEEFLSRALAEQPERADWHALLAEISRRLGVNDAAIDSYRRAVDLQNEPRHRVGLAQVLAAAGRVEEAEQEFQQVLRVDPNNSAATYALGRHRYRQGQFDEAERLLMLTLASDPENAGAHRVLAQLYDARGNHPQALSHHAAVARLLPENTSFLLGYARSQRRNADTFGAEATYRRILSLDPDNSAARTDLERLK
SIO_010081: CX676_RS23175
subclass of: SO_0000673
so part of: CX676_RS23175
location: 13702..14391
location: region:13702-14391:1
so has part: feature:13702-14391:1:exon

WP_232816742.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13702-14391:1:exon

CX676_RS22380
type: Gene
subclass of: SO_0000704
RO_0002162: 1077935
locus tag: CX676_RS22380
old locus tag: CX676_22375
so part of: sequence
location: 14388..15794
location: region:14388-15794:1
so has part: feature:14388-15794:1:exon
subclass of: SO_0000010

position:14388:1
position: 14388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15794:1
position: 15794
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14388-15794:1:exon

CX676_RS22380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1077935
locus tag: CX676_RS22380
old locus tag: CX676_22375
inference: COORDINATES: protein motif:HMM:NF018378.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: D-glucuronyl C5-epimerase family protein
translation: MIGHSIRKRIGLVRRPAAIRRSFPSSLPPLPEARQAVYEYYRLDFDANGCPMRRMPDGRLVFHPILIPYLVADYLNLYRTTKDPACLDYARQVMDMALSRAEPGRDELLFYYEPEGGLTAMPHRFYSALTQSWYVKSLAQLEKICPGAYREQLARAFASLLIPIDQGGVLVRRDFGWLVEEYPHEPPLYTLNGWLTAIRWVLEALPELEQCNLDCREFLRRNLDAVEHLLPLYDAAFCWNTRYQLTGFTRLKIVTDRRAGMTCGSFGIDIPGETPLQADLSPPAQSPRWHSHLERQDGRLLQFNIVQSMISYPLANRYRAEIRCDQDCTATVFVADGDYDPALTAMPTTRWREIGRHDLRTGSNQIDGDIPFDDRNIFAYPTNFKKKIAGRFYNAYHIVHVIDLAVMYAGTGRQMFADTARKWLSYMDHWPEMQVLADPQTSKTSHVYGDDLSAVVERYLSRPVIRTL
SIO_010081: CX676_RS22380
subclass of: SO_0000673
so part of: CX676_RS22380
location: 14388..15794
location: region:14388-15794:1
so has part: feature:14388-15794:1:exon

WP_101754992.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14388-15794:1:exon

CX676_RS22385
type: Gene
subclass of: SO_0000704
RO_0002162: 1077935
locus tag: CX676_RS22385
old locus tag: CX676_22380
so part of: sequence
location: 15814..16638
location: region:15814-16638:1
so has part: feature:15814-16638:1:exon
subclass of: SO_0000010

position:15814:1
position: 15814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16638:1
position: 16638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15814-16638:1:exon

CX676_RS22385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1077935
locus tag: CX676_RS22385
old locus tag: CX676_22380
inference: COORDINATES: protein motif:HMM:NF013245.2
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter permease
translation: MEQNTATAPQTDFPVQHVGAIRFQASRIIAALILREASSRFGKSAGGYFWSIAEPAAGVLLLSIAFGFLLAKPPIGSSFFLFYTSGVVPLLFFNTLSNALAQSVASNKGLLSYPVVSILEVIVARTLLELMTYSAVFVIITLFVVQVDNIVLHPDLLQVIVALLLTALLGMAVGMANCILFVHFPIWRNIWRILTRPMLIISGVMFTYDRMPESLKEWLWYNPLLQNIGVMRGGLYAVYNDSYVSYTYIIGVCLFIIAVSAAIIRADQGRLIEQ
SIO_010081: CX676_RS22385
subclass of: SO_0000673
so part of: CX676_RS22385
location: 15814..16638
location: region:15814-16638:1
so has part: feature:15814-16638:1:exon

WP_157936059.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15814-16638:1:exon

CX676_RS22390
type: Gene
subclass of: SO_0000704
RO_0002162: 1077935
locus tag: CX676_RS22390
old locus tag: CX676_22385
so part of: sequence
location: complement(16674..17564)
location: region:16674-17564:-1
so has part: feature:16674-17564:-1:exon
subclass of: SO_0000010

position:16674:-1
position: 16674
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17564:-1
position: 17564
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16674-17564:-1:exon

CX676_RS22390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1077935
locus tag: CX676_RS22390
old locus tag: CX676_22385
inference: COORDINATES: protein motif:HMM:NF024880.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: class I SAM-dependent methyltransferase
translation: MVQPETKSTAQKLVEAREMVQRKQEVIVKLNQRIADQAEIIARRDEAIVKLNQRIVDQAEIVARRDEAIVRRDEAIGKLNNRLASRDEREGRDAEFQTLAHNSAEGMNAFFQQVDDREIYTQFGLAVRALMDSKAVPLDGVELLDFGTGPGLALKALIGEARPKRVVGYDFSENALQIAAAEIPGGQFGVADIYQPTAEQFDLVLCMEVLEHLEYPERALATLVGAVRPGGTLLLTVPQGRLDRSRYHVNFWSPESWLRFLEREIGTAGEVEAGTFAKMDETVHRNNFAILRKTPA
SIO_010081: CX676_RS22390
subclass of: SO_0000673
so part of: CX676_RS22390
location: complement(16674..17564)
location: region:16674-17564:-1
so has part: feature:16674-17564:-1:exon

WP_101754986.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16674-17564:-1:exon

CX676_RS22395
type: Gene
subclass of: SO_0000704
RO_0002162: 1077935
locus tag: CX676_RS22395
old locus tag: CX676_22390
so part of: sequence
location: complement(17632..18879)
location: region:17632-18879:-1
so has part: feature:17632-18879:-1:exon
subclass of: SO_0000010

position:17632:-1
position: 17632
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18879:-1
position: 18879
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17632-18879:-1:exon

CX676_RS22395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1077935
locus tag: CX676_RS22395
old locus tag: CX676_22390
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDKPDPQAPARDRGLWPGRYGRPDPEHHPGNLVTEADRPAEQGGRPQNLAGRARAALMSLLDAHHHGGGVGPDAYHAAPLAHPMAEGRFLAAAAIAAQTRLISQSQLRAMAEAALSRLNQAALPFAGGIGWGLGFDYAATDAREPFLITTAMIAEGLIELTALLPDLPQAAELLDGSLGAIQTWCRTESVLNADLGIALPIYSPTVRRPILNAAIYAISVHLRGQPDGLMADEFRSQLCEIRALRQPGIGWSDDPASPVIDLLHQCFILNSLSAGLPADQRDRAAEDLALVETMSLFSAAPGFLDTASLVAKPELPPAGGTALLRVGDAYLAIKPNPARLWSLGELLVTLSGRIADRVDGRSDRWRGYAAPVCEAVLMRLAAGDGEALYPRQRMYAAFGLARFMAAIRQGTGVGA
SIO_010081: CX676_RS22395
subclass of: SO_0000673
so part of: CX676_RS22395
location: complement(17632..18879)
location: region:17632-18879:-1
so has part: feature:17632-18879:-1:exon

WP_198590398.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17632-18879:-1:exon

CX676_RS22400
type: Gene
subclass of: SO_0000704
RO_0002162: 1077935
gene: wecB
locus tag: CX676_RS22400
old locus tag: CX676_22395
so part of: sequence
location: complement(18780..19841)
location: region:18780-19841:-1
so has part: feature:18780-19841:-1:exon
subclass of: SO_0000010

position:18780:-1
position: 18780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19841:-1
position: 19841
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18780-19841:-1:exon

CX676_RS22400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1077935
gene: wecB
locus tag: CX676_RS22400
old locus tag: CX676_22395
EC number: 5.1.3.14
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009737023.1
GO function: GO:0008761 - UDP-N-acetylglucosamine 2-epimerase activity [Evidence IEA]
GO process: GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)
translation: MNQTATTPRRILTVVGARPQFIKAAALRAAFDAAPDFHEILVHTGQHYDTNMSGVFFEELGLRAPEHRLTIEDRHHGAMTGQMLAEIERILLAETPDALLVYGDTNSTLAGALAAAKLHIPVIHVEAGLRSFNKAMPEEINRILTDHVSRLLFCSTRTGVDNLADENIRDGVHMVGDIMYDVALRFGALADREALTATYRRPGRKLALLTLHRAENFDRPGRARQILDFVAGYAQDHDIVFPIHPGTRAKLAQMDVDLPAGLMMIDPLPYIQLQGLLGIADLVLTDSGGLQKEAYFHRKPCITLRDETEWVETVDAGWNALWTNPIHKPRREIEDYGQGDTADRILSIIRETL
SIO_010081: CX676_RS22400
subclass of: SO_0000673
so part of: CX676_RS22400
location: complement(18780..19841)
location: region:18780-19841:-1
so has part: feature:18780-19841:-1:exon

WP_101754988.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18780-19841:-1:exon