Thiolapillus brandeum strain Hiromi 1 plasmid pTBH13, complete sequence.
type: Entry
definition: Thiolapillus brandeum strain Hiromi 1 plasmid pTBH13, complete sequence.
sequence version: NZ_AP012275.1
sequence date: 2023-08-08
sequence: sequence
division: CON
label: NZ_AP012275.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMD00060997
keyword: RefSeq
source: Thiolapillus brandeum
organism: Thiolapillus brandeum
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Thiolapillus.
reference: 1
references: 25133584
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nAP012275.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 1.1.03.24\nGenome Coverage :: 30x\nSequencing Technology :: 454\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 08/06/2023 12:35:05\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,010\nCDSs (total) :: 2,965\nGenes (coding) :: 2,928\nCDSs (with protein) :: 2,928\nGenes (RNA) :: 45\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 38\nncRNAs :: 4\nPseudo Genes (total) :: 37\nCDSs (without protein) :: 37\nPseudo Genes (ambiguous residues) :: 0 of 37\nPseudo Genes (frameshifted) :: 9 of 37\nPseudo Genes (incomplete) :: 33 of 37\nPseudo Genes (internal stop) :: 1 of 37\nPseudo Genes (multiple problems) :: 5 of 37\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 13478
topology: circular
so has quality: SO_0000988
location: 1..13478
location: region:1-13478:1
RO_0002162: 1076588

NZ_AP012275
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMD00060997
type: BioSample
SIO_000068: biosample

1
title: Physiological and genomic features of a novel sulfur-oxidizing gammaproteobacterium belonging to a previously uncultivated symbiotic lineage isolated from a hydrothermal vent
author: Nunoura, T.
author: Takaki, Y.
author: Kazama, H.
author: Kakuta, J.
author: Shimamura, S.
author: Makita, H.
author: Hirai, M.
author: Miyazaki, M.
author: Takai, K.
journal: PLoS One 9 (8), e104959 (2014)
pubmed: 25133584
comments: DOI:10.1371/journal.pone.0104959 Publication Status: Online-Only

25133584
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Nunoura, T.
author: Kazama, H.
author: Kakuta, J.
author: Shimamura, S.
author: Takaki, Y.
author: Takai, K.
journal: Submitted (16-AUG-2011) Contact:Yoshihiro Takaki Japan Agency for Maine-Earth Science and Technology, Extremobiosphere Research Program; 2-15 Natsushima-cho, Yokosuka, Kanagawa 237-0026, Japan URL :http://www.jamstec.go.jp

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13478:1
position: 13478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-13478:1:source
so part of: sequence
organism: Thiolapillus brandeum
mol type: genomic DNA
strain: Hiromi 1
type material: type strain of Thiolapillus brandeum
plasmid: pTBH13

1076588
type: Taxonomy
SIO_000068: taxonomy

TBH_RS14875
type: Gene
subclass of: SO_0000704
RO_0002162: 1076588
locus tag: TBH_RS14875
old locus tag: TBH_P201
so part of: sequence
location: 239..505
location: region:239-505:1
so has part: feature:239-505:1:exon
subclass of: SO_0000010

position:239:1
position: 239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:505:1
position: 505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:239-505:1:exon

TBH_RS14875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1076588
locus tag: TBH_RS14875
old locus tag: TBH_P201
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNPFSEYAAIIGIDWADRKHDLCLKTPDDDSLEYSVLEHKPEAIEDWANELRVRFEGKPVAICIESRKVPLIRNRSNHTVLPKQPLAP
SIO_010081: TBH_RS14875
subclass of: SO_0000673
so part of: TBH_RS14875
location: 239..505
location: region:239-505:1
so has part: feature:239-505:1:exon

WP_041071704.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:239-505:1:exon

TBH_RS14880
type: Gene
subclass of: SO_0000704
RO_0002162: 1076588
locus tag: TBH_RS14880
old locus tag: TBH_P202
so part of: sequence
location: 538..837
location: region:538-837:1
so has part: feature:538-837:1:exon
subclass of: SO_0000010

position:538:1
position: 538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:837:1
position: 837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:538-837:1:exon

TBH_RS14880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1076588
locus tag: TBH_RS14880
old locus tag: TBH_P202
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004867952.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNKQRRKNEWQRLIEEQAASGLTQKAFCEQAGIAVATFGYWKRKLRAEGDKAGLDEVASTRRVSLDDWIELSPPVTEPAPGWHIELDLGNGLCLRLHQG
SIO_010081: TBH_RS14880
subclass of: SO_0000673
so part of: TBH_RS14880
location: 538..837
location: region:538-837:1
so has part: feature:538-837:1:exon

WP_041065638.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:538-837:1:exon

TBH_RS14885
type: Gene
subclass of: SO_0000704
RO_0002162: 1076588
gene: tnpB
locus tag: TBH_RS14885
old locus tag: TBH_P203
so part of: sequence
location: 840..1199
location: region:840-1199:1
so has part: feature:840-1199:1:exon
subclass of: SO_0000010

position:840:1
position: 840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1199:1
position: 1199
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840-1199:1:exon

TBH_RS14885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1076588
gene: tnpB
locus tag: TBH_RS14885
old locus tag: TBH_P203
inference: COORDINATES: protein motif:HMM:NF017528.2
note: TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS66 family insertion sequence element accessory protein TnpB
translation: MLLPESGVRLWLYAPPTDMRKSFDGLSALVRQKLAEDPTSGPLFVFINRKRTQLKVLYFEQGGYCLWSKRLEQGRFHFNAQGGDKQALSWTDLKLIIEGIDLRSVRRFKRYRCGRKGRV
SIO_010081: TBH_RS14885
subclass of: SO_0000673
so part of: TBH_RS14885
location: 840..1199
location: region:840-1199:1
so has part: feature:840-1199:1:exon

WP_041065640.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:840-1199:1:exon

TBH_RS14890
type: Gene
subclass of: SO_0000704
RO_0002162: 1076588
locus tag: TBH_RS14890
old locus tag: TBH_P204
so part of: sequence
location: 1214..2734
location: region:1214-2734:1
so has part: feature:1214-2734:1:exon
subclass of: SO_0000010

position:1214:1
position: 1214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2734:1
position: 2734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1214-2734:1:exon

TBH_RS14890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1076588
locus tag: TBH_RS14890
old locus tag: TBH_P204
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014003819.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS66 family transposase
translation: MQVTDCTAKNTTSTEADPAAVIRALQAEVASLQQQLDWFKRQLFGRKSEKRIIDNPDQLDLGALLGDTPAPTEPEPTEEITYRRRKRKQRNADDVTDSGLRFGPDVPIEVIELSAPQLNGPEADQYEVIDTKISRRLAQRPGSYVVLEYRRPVLRHKPGRHLMEVPAPSAVFEGSLADVSLLAGILVDKFCYHLPLYRQHQRLKDAGITLSRSTLTNYVQRSIELLEPIVDAQWRHILQSRVLAMDETPIKAGRKKKGQMQSTWYWPIYGEDDELCFTWSSSRGSAHIEQQLKSFAGVLLSDGYAAYDRYAKNKPQITQAQCWAHTRRYFERAQKSDPLAQEALTLIGGLYRVEQQIREKGLEGQKKLDYRSRHALPIFEAFFAWCHQQRQRMDLVNTDPLAKALVYADNHREQLKVYLGDPEMPIDTNHLERALRVIPMGRKNWLFCWSEVGAKHVGIIQSLLTTCRLHNVDPYTYLVDVLQRIALHPARDVEELTSYARNWCTE
SIO_010081: TBH_RS14890
subclass of: SO_0000673
so part of: TBH_RS14890
location: 1214..2734
location: region:1214-2734:1
so has part: feature:1214-2734:1:exon

WP_052470311.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1214-2734:1:exon

TBH_RS14895
type: Gene
subclass of: SO_0000704
RO_0002162: 1076588
locus tag: TBH_RS14895
old locus tag: TBH_P205
so part of: sequence
location: 2805..4070
location: region:2805-4070:1
so has part: feature:2805-4070:1:exon
subclass of: SO_0000010

position:2805:1
position: 2805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4070:1
position: 4070
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2805-4070:1:exon

TBH_RS14895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1076588
locus tag: TBH_RS14895
old locus tag: TBH_P205
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011785204.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS256 family transposase
translation: MSKDNVVALSSPEEIEDPLTELLHNGAKRLIQQAIEAELADLLARYTGEVDEQGRRTVVRNGYLPEREILTGVGPVSVKVPKVRSRGEEAVVFRSSLVPPYVRKARRVEAALPWLYLKGISTGQMQEALEVLVGSEAKGLSASVIGRLKRDWEAEYTEWCCRDVSRDRWVYWWADGIYSGLRAERQKLCALVIIGVNERGEKHFLAIEDGVRESTQSWREVLLDLKKHGLEEAPKLAAGDGALGFWAALDEVYPETRHQRCWVHKTANVLNYLPKGVQPKAKKALQEIWMAENRASAHKALAHFVKTYQAKYPKAVACLEKDREALLAFYDFPAEHWVHIRTTNPIESTFATIRHRTDQTKGCVSRNTMLAMLYKLGMSAEKRWRRIRGFNYLAKIIEGVKFRDGVEEEVNNETDDSRNVA
SIO_010081: TBH_RS14895
subclass of: SO_0000673
so part of: TBH_RS14895
location: 2805..4070
location: region:2805-4070:1
so has part: feature:2805-4070:1:exon

WP_041064084.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2805-4070:1:exon

TBH_RS14900
type: Gene
subclass of: SO_0000704
RO_0002162: 1076588
locus tag: TBH_RS14900
old locus tag: TBH_P206
so part of: sequence
location: 4167..4490
location: region:4167-4490:1
so has part: feature:4167-4490:1:exon
subclass of: SO_0000010

position:4167:1
position: 4167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4490:1
position: 4490
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4167-4490:1:exon

TBH_RS14900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1076588
locus tag: TBH_RS14900
old locus tag: TBH_P206
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014002176.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSIDIDGLSFEELLDLNQRVVARLKMLESMQAHIEMMAFNIGQRVSFEHGGGRLMGTLVKYNRKTVTVVTDNGQRWNIPPHLLAPVKDAGTAEPQQPPTGKKKKRLR
SIO_010081: TBH_RS14900
subclass of: SO_0000673
so part of: TBH_RS14900
location: 4167..4490
location: region:4167-4490:1
so has part: feature:4167-4490:1:exon

WP_041071681.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4167-4490:1:exon

TBH_RS14905
type: Gene
subclass of: SO_0000704
RO_0002162: 1076588
gene: istB
locus tag: TBH_RS14905
old locus tag: TBH_P207
so part of: sequence
location: 4429..5238
location: region:4429-5238:1
so has part: feature:4429-5238:1:exon
subclass of: SO_0000010

position:4429:1
position: 4429
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5238:1
position: 5238
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4429-5238:1:exon

TBH_RS14905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1076588
gene: istB
locus tag: TBH_RS14905
old locus tag: TBH_P207
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009206130.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS21-like element helper ATPase IstB
translation: MPAPLSRNSRRPARRKSDSDNPGWRNSGLEWTVTKQLKLYGMASACEELLGERPRKAKDPVMWLEKLIEAERGDRQVRSLNYQLRIARFPIRRELDSFVWAESSVDQATIETLAEGEFTSQAHNLILVGGTGTGKTHLATALGIAVIHRGQRVRFFNVVDLVNRLEQEKANGQSGKIIRQLLQVDLVILDELGYLPFPESGGALLFHLVSQLYERTSLIITTNLSFSEWVQVFTDAKMTTAMLDRITHHCDIIETGNESYRFKHRNQAS
SIO_010081: TBH_RS14905
subclass of: SO_0000673
so part of: TBH_RS14905
location: 4429..5238
location: region:4429-5238:1
so has part: feature:4429-5238:1:exon

WP_197541181.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4429-5238:1:exon

TBH_RS14910
type: Gene
subclass of: SO_0000704
RO_0002162: 1076588
locus tag: TBH_RS14910
old locus tag: TBH_P208
pseudo: true
so part of: sequence
location: complement(<5302..6123)
location: region:5302-6123:-1
so has part: feature:5302-6123:-1:exon
subclass of: SO_0000010

position:5302:-1
position: 5302
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:6123:-1
position: 6123
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5302-6123:-1:exon

TBH_RS14910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1076588
locus tag: TBH_RS14910
old locus tag: TBH_P208
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012973766.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS5 family transposase
SIO_010081: TBH_RS14910
subclass of: SO_0000673
so part of: TBH_RS14910
location: complement(<5302..6123)
location: region:5302-6123:-1
so has part: feature:5302-6123:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5302-6123:-1:exon

TBH_RS16035
type: Gene
subclass of: SO_0000704
RO_0002162: 1076588
locus tag: TBH_RS16035
old locus tag: TBH_P209
so part of: sequence
location: complement(6171..6611)
location: region:6171-6611:-1
so has part: feature:6171-6611:-1:exon
subclass of: SO_0000010

position:6171:-1
position: 6171
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6611:-1
position: 6611
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6171-6611:-1:exon

TBH_RS16035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1076588
locus tag: TBH_RS16035
old locus tag: TBH_P209
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKALLGSGGFVPGASIQVIQGNRRFVALFKKTSVRVTATNQCWYESNHITRPSTGTLFPLALQKRPVTATVRHKLRKTRMAWDHEREIEKKQEIVEEVASSLKGMGVQAADINNIATKLVDNLISTTPPEKEEVCFELISRVLKNP
SIO_010081: TBH_RS16035
subclass of: SO_0000673
so part of: TBH_RS16035
location: complement(6171..6611)
location: region:6171-6611:-1
so has part: feature:6171-6611:-1:exon

WP_144375520.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6171-6611:-1:exon

TBH_RS15780
type: Gene
subclass of: SO_0000704
RO_0002162: 1076588
locus tag: TBH_RS15780
so part of: sequence
location: complement(6922..7368)
location: region:6922-7368:-1
so has part: feature:6922-7368:-1:exon
subclass of: SO_0000010

position:6922:-1
position: 6922
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7368:-1
position: 7368
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6922-7368:-1:exon

TBH_RS15780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1076588
locus tag: TBH_RS15780
inference: COORDINATES: protein motif:HMM:TIGR01909.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: C-GCAxxG-C-C family protein
translation: MSKASQKGKELFDSGLYCAESVLKVIADEENIDSPLIPGIATGFCSGMSRTCNMCGALTGGILALNVVFGRSSSEESVEENYIAVQSLMNKFKNEFGTTNCQELLDCDLGSKEGQQTFNENNLHLKCREYTGKVTQLAREIINNAKKP
SIO_010081: TBH_RS15780
subclass of: SO_0000673
so part of: TBH_RS15780
location: complement(6922..7368)
location: region:6922-7368:-1
so has part: feature:6922-7368:-1:exon

WP_172649545.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6922-7368:-1:exon

TBH_RS15785
type: Gene
subclass of: SO_0000704
RO_0002162: 1076588
locus tag: TBH_RS15785
old locus tag: TBH_P211
so part of: sequence
location: complement(7463..8437)
location: region:7463-8437:-1
so has part: feature:7463-8437:-1:exon
subclass of: SO_0000010

position:7463:-1
position: 7463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8437:-1
position: 8437
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7463-8437:-1:exon

TBH_RS15785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1076588
locus tag: TBH_RS15785
old locus tag: TBH_P211
EC number: 3.4.22.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011979481.1
GO function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: caspase family protein
translation: MRKALVVGINYYEHCSSLYGCVDDAHAVKAILERHGDGSVNFDVQLFTGTGAADTVTRSQIKDYVEKLFSDDSEIALFYFAGHGHIESSGGYLIASDSQRGDEGVSLTEILALANDSKARNKIIILDSCHSGIAGSPPTSSSNAVLAEGITILTASTEDQYATEENGRGVFTTLFVDALNGVAANLLGDVTPGSIYAYIDQSLGAWEQRPVFKTNVKSFVSLRKVQPSIQLDDLRRITEFFPEPGFQFPLDPTFEPEMKGRDDGMPDPDPENTRIFAILQRFNRVNLVVPVDAPHMWNAAMESKSCKLTVLGEHYRRLVERGRI
SIO_010081: TBH_RS15785
subclass of: SO_0000673
so part of: TBH_RS15785
location: complement(7463..8437)
location: region:7463-8437:-1
so has part: feature:7463-8437:-1:exon

WP_082030836.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7463-8437:-1:exon

TBH_RS14920
type: Gene
subclass of: SO_0000704
RO_0002162: 1076588
locus tag: TBH_RS14920
old locus tag: TBH_P212
so part of: sequence
location: complement(8446..8862)
location: region:8446-8862:-1
so has part: feature:8446-8862:-1:exon
subclass of: SO_0000010

position:8446:-1
position: 8446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8862:-1
position: 8862
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8446-8862:-1:exon

TBH_RS14920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1076588
locus tag: TBH_RS14920
old locus tag: TBH_P212
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016753958.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TIR domain-containing protein
translation: MPKLKNYRLFISHSWTYGDAYEKLVSFFNEHPNFKWTDYSVPKDDPIHDAANQTELYDAIKKQIAPVNCVIILAGVYSTYSKWINKEIEISKGVFSKPIVAVEPWGSEKTSQIVKDNADAIVKWQSSSIVNAIRDYSI
SIO_010081: TBH_RS14920
subclass of: SO_0000673
so part of: TBH_RS14920
location: complement(8446..8862)
location: region:8446-8862:-1
so has part: feature:8446-8862:-1:exon

WP_041071708.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8446-8862:-1:exon

TBH_RS14925
type: Gene
subclass of: SO_0000704
RO_0002162: 1076588
locus tag: TBH_RS14925
old locus tag: TBH_P213
so part of: sequence
location: complement(8974..9522)
location: region:8974-9522:-1
so has part: feature:8974-9522:-1:exon
subclass of: SO_0000010

position:8974:-1
position: 8974
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9522:-1
position: 9522
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8974-9522:-1:exon

TBH_RS14925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1076588
locus tag: TBH_RS14925
old locus tag: TBH_P213
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNLSDIHFHDSVVNAVIEKTATDELCFDVEYPVDWANNGFSKAFIVFSEVSGYEIHEIPFEGPPTILDYEVLESNEDKTLIKIQTNAGYRCFSYSSVDIEWPKKYKNTIEEKFYSAKRDSLMKFVLNDYVQITKGAHAGHAGSVISVSLAEDALSYVVELESGQGEVEVKQSFLSFSENEKT
SIO_010081: TBH_RS14925
subclass of: SO_0000673
so part of: TBH_RS14925
location: complement(8974..9522)
location: region:8974-9522:-1
so has part: feature:8974-9522:-1:exon

WP_144375522.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8974-9522:-1:exon

TBH_RS14930
type: Gene
subclass of: SO_0000704
RO_0002162: 1076588
locus tag: TBH_RS14930
old locus tag: TBH_P214
so part of: sequence
location: complement(9607..10131)
location: region:9607-10131:-1
so has part: feature:9607-10131:-1:exon
subclass of: SO_0000010

position:9607:-1
position: 9607
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10131:-1
position: 10131
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9607-10131:-1:exon

TBH_RS14930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1076588
locus tag: TBH_RS14930
old locus tag: TBH_P214
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017217582.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GrpB family protein
translation: MSQAQVILEEYDSTWQIKFEEEKKYLLTIAGEWNYGGIEHVGSTAVLGMIAKPVIDIMFGVSSLEESKQAIKVLVNNGYKYWPYKAEVMHWFCKPSDEFRTHHLHLIPFDSPLWKERIKFRELLRKNEAVANEYASLKRKLASTYKKDREKYTEMKWPFIQKALRNANNALQRT
SIO_010081: TBH_RS14930
subclass of: SO_0000673
so part of: TBH_RS14930
location: complement(9607..10131)
location: region:9607-10131:-1
so has part: feature:9607-10131:-1:exon

WP_052470314.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9607-10131:-1:exon

TBH_RS14935
type: Gene
subclass of: SO_0000704
RO_0002162: 1076588
locus tag: TBH_RS14935
so part of: sequence
location: 10250..10531
location: region:10250-10531:1
so has part: feature:10250-10531:1:exon
subclass of: SO_0000010

position:10250:1
position: 10250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10531:1
position: 10531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10250-10531:1:exon

TBH_RS14935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1076588
locus tag: TBH_RS14935
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQFSIFDALTIDLGQPQDMASQIEAMCNALRVSDDGRRHLAQCCVYGRIKAGALNELLDRAPGVLVDPAATRAAVWEAPIPWDEFLGHLRLEA
SIO_010081: TBH_RS14935
subclass of: SO_0000673
so part of: TBH_RS14935
location: 10250..10531
location: region:10250-10531:1
so has part: feature:10250-10531:1:exon

WP_041071712.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10250-10531:1:exon

TBH_RS15790
type: Gene
subclass of: SO_0000704
RO_0002162: 1076588
locus tag: TBH_RS15790
old locus tag: TBH_P215
so part of: sequence
location: complement(10620..11027)
location: region:10620-11027:-1
so has part: feature:10620-11027:-1:exon
subclass of: SO_0000010

position:10620:-1
position: 10620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11027:-1
position: 11027
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10620-11027:-1:exon

TBH_RS15790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1076588
locus tag: TBH_RS15790
old locus tag: TBH_P215
EC number: 3.5.4.5
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005493160.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cytidine deaminase
translation: MEIGEKLYNEAVKLVNERYPLGWGGAAAIRTETGRIITSISPDVKNDALALCMEVGSYLEAQKYNEKVTHSLCVSRESESSKFKILTPCGVCQERLVYWGGDVLAAVSNLDQEVIFKTLRELQPYHWLGAYGQNL
SIO_010081: TBH_RS15790
subclass of: SO_0000673
so part of: TBH_RS15790
location: complement(10620..11027)
location: region:10620-11027:-1
so has part: feature:10620-11027:-1:exon

WP_082030837.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10620-11027:-1:exon

TBH_RS14940
type: Gene
subclass of: SO_0000704
RO_0002162: 1076588
locus tag: TBH_RS14940
old locus tag: TBH_P216
so part of: sequence
location: complement(11227..12093)
location: region:11227-12093:-1
so has part: feature:11227-12093:-1:exon
subclass of: SO_0000010

position:11227:-1
position: 11227
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12093:-1
position: 12093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11227-12093:-1:exon

TBH_RS14940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1076588
locus tag: TBH_RS14940
old locus tag: TBH_P216
inference: COORDINATES: protein motif:HMM:NF020442.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FRG domain-containing protein
translation: MEIEEIDSIPSLLELIASERRKAGDNSLYFRGHKKHYPTVTPSIGRDGLLESEDKLFKEFILRNPDEFEGQRSTFQILAKMQHYGLPTRLLDISSNPLISLFFAVEEDEKTEEIDGEFVIFSIPQKYIKYYDSDTVSVVSNIAKRPYKKLNVSRISRKISKEESKQQWLKRFNDIPHIKYLLHEIKDEKPYFAHVIEKDHLQSVWCVKPLLNNRRIIKQDGAFLLFGLNGSKEKLAEYNSEAFMPKCYRVTNKAKLREQLELLGVSKDKIYPELDTTAQYLKTKYAKV
SIO_010081: TBH_RS14940
subclass of: SO_0000673
so part of: TBH_RS14940
location: complement(11227..12093)
location: region:11227-12093:-1
so has part: feature:11227-12093:-1:exon

WP_052470315.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11227-12093:-1:exon

TBH_RS15795
type: Gene
subclass of: SO_0000704
RO_0002162: 1076588
locus tag: TBH_RS15795
old locus tag: TBH_P217
so part of: sequence
location: complement(12189..12476)
location: region:12189-12476:-1
so has part: feature:12189-12476:-1:exon
subclass of: SO_0000010

position:12189:-1
position: 12189
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12476:-1
position: 12476
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12189-12476:-1:exon

TBH_RS15795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1076588
locus tag: TBH_RS15795
old locus tag: TBH_P217
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006787583.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HigA family addiction module antitoxin
translation: MLMHNPPHPGEIIKELCLDPLGISITEAAEALGVSRKTLSSIINGKAGVSPEMAVRLSIAFNTSSESWLNQQTQYDLWQAEQHRKELHVKRLSAA
SIO_010081: TBH_RS15795
subclass of: SO_0000673
so part of: TBH_RS15795
location: complement(12189..12476)
location: region:12189-12476:-1
so has part: feature:12189-12476:-1:exon

WP_041071714.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12189-12476:-1:exon

TBH_RS14950
type: Gene
subclass of: SO_0000704
RO_0002162: 1076588
locus tag: TBH_RS14950
so part of: sequence
location: complement(12486..12764)
location: region:12486-12764:-1
so has part: feature:12486-12764:-1:exon
subclass of: SO_0000010

position:12486:-1
position: 12486
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12764:-1
position: 12764
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12486-12764:-1:exon

TBH_RS14950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1076588
locus tag: TBH_RS14950
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007349587.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MIQSFKHKGLELFFKTGKKTGIQAKHANRLRMILGRLNASASPVDMDLPGLYLHKLTGDRKETWSVRVSGNWRVTFQFNGVHAEVVDYEDYH
SIO_010081: TBH_RS14950
subclass of: SO_0000673
so part of: TBH_RS14950
location: complement(12486..12764)
location: region:12486-12764:-1
so has part: feature:12486-12764:-1:exon

WP_041071716.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12486-12764:-1:exon

TBH_RS14955
type: Gene
subclass of: SO_0000704
RO_0002162: 1076588
locus tag: TBH_RS14955
old locus tag: TBH_P218
so part of: sequence
location: complement(12886..13098)
location: region:12886-13098:-1
so has part: feature:12886-13098:-1:exon
subclass of: SO_0000010

position:12886:-1
position: 12886
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13098:-1
position: 13098
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12886-13098:-1:exon

TBH_RS14955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1076588
locus tag: TBH_RS14955
old locus tag: TBH_P218
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013219252.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system HicB family antitoxin
translation: MYKYETIIYWSEEDKSFIADVPELPGCMAHGASPDEALANAQEAMQLWLDTAREFGDPIPEPKGRRLVYA
SIO_010081: TBH_RS14955
subclass of: SO_0000673
so part of: TBH_RS14955
location: complement(12886..13098)
location: region:12886-13098:-1
so has part: feature:12886-13098:-1:exon

WP_041071720.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12886-13098:-1:exon

TBH_RS14960
type: Gene
subclass of: SO_0000704
RO_0002162: 1076588
locus tag: TBH_RS14960
old locus tag: TBH_P219
so part of: sequence
location: complement(13101..13352)
location: region:13101-13352:-1
so has part: feature:13101-13352:-1:exon
subclass of: SO_0000010

position:13101:-1
position: 13101
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13352:-1
position: 13352
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13101-13352:-1:exon

TBH_RS14960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1076588
locus tag: TBH_RS14960
old locus tag: TBH_P219
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010998499.1
GO function: GO:0003729 - mRNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system HicA family toxin
translation: MGKHEKVMEKILRGTSDANIAFDDIRGVLLHLGFDERIRGSHHIYRKKGIDEKINMQRSGSKAKPYQVRQIREVLLKYHLMGE
SIO_010081: TBH_RS14960
subclass of: SO_0000673
so part of: TBH_RS14960
location: complement(13101..13352)
location: region:13101-13352:-1
so has part: feature:13101-13352:-1:exon

WP_041071724.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13101-13352:-1:exon