Thiolapillus brandeum strain Hiromi 1 plasmid pTBH13, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Thiolapillus.
Physiological and genomic features of a novel sulfur-oxidizing gammaproteobacterium belonging to a previously uncultivated symbiotic lineage isolated from a hydrothermal vent
DOI:10.1371/journal.pone.0104959 Publication Status: Online-Only
Submitted (16-AUG-2011) Contact:Yoshihiro Takaki Japan Agency for Maine-Earth Science and Technology, Extremobiosphere Research Program; 2-15 Natsushima-cho, Yokosuka, Kanagawa 237-0026, Japan URL :http://www.jamstec.go.jp
REFSEQ INFORMATION: The reference sequence is identical to\nAP012275.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 1.1.03.24\nGenome Coverage :: 30x\nSequencing Technology :: 454\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 08/06/2023 12:35:05\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,010\nCDSs (total) :: 2,965\nGenes (coding) :: 2,928\nCDSs (with protein) :: 2,928\nGenes (RNA) :: 45\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 38\nncRNAs :: 4\nPseudo Genes (total) :: 37\nCDSs (without protein) :: 37\nPseudo Genes (ambiguous residues) :: 0 of 37\nPseudo Genes (frameshifted) :: 9 of 37\nPseudo Genes (incomplete) :: 33 of 37\nPseudo Genes (internal stop) :: 1 of 37\nPseudo Genes (multiple problems) :: 5 of 37\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_004867952.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF017528.2
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_014003819.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011785204.1
COORDINATES: similar to AA sequence:RefSeq:WP_014002176.1
COORDINATES: similar to AA sequence:RefSeq:WP_009206130.1
COORDINATES: similar to AA sequence:RefSeq:WP_012973766.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR01909.1
COORDINATES: similar to AA sequence:RefSeq:WP_011979481.1
GO:0008234 - cysteine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016753958.1
COORDINATES: similar to AA sequence:RefSeq:WP_017217582.1
COORDINATES: similar to AA sequence:RefSeq:WP_005493160.1
COORDINATES: protein motif:HMM:NF020442.2
COORDINATES: similar to AA sequence:RefSeq:WP_006787583.1
COORDINATES: similar to AA sequence:RefSeq:WP_007349587.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_013219252.1
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_010998499.1
GO:0003729 - mRNA binding [Evidence IEA]
type II toxin-antitoxin system HicA family toxin