Cronobacter universalis NCTC 9529 plasmid pCUNV1, complete sequence.
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Cronobacter.
Fully Closed Genome Sequences of Five Type Strains of the Genus Cronobacter and One Cronobacter sakazakii Strain
Submitted (31-JUL-2015) Nestle Institute of Health Sciences, EPFL Innovation Park, Building G, Lausanne 1015, Switzerland
REFSEQ INFORMATION: The reference sequence is identical to\nCP012258.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 2.0\nGenome Coverage :: 46\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/13/2022 16:35:36\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,214\nCDSs (total) :: 4,102\nGenes (coding) :: 4,045\nCDSs (with protein) :: 4,045\nGenes (RNA) :: 112\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 82\nncRNAs :: 8\nPseudo Genes (total) :: 57\nCDSs (without protein) :: 57\nPseudo Genes (ambiguous residues) :: 0 of 57\nPseudo Genes (frameshifted) :: 12 of 57\nPseudo Genes (incomplete) :: 44 of 57\nPseudo Genes (internal stop) :: 7 of 57\nPseudo Genes (multiple problems) :: 6 of 57\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_012815787.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007854457.1
COORDINATES: similar to AA sequence:RefSeq:WP_007780726.1
COORDINATES: similar to AA sequence:RefSeq:WP_002895168.1
GO:0071468 - cellular response to acidic pH [Evidence IEA]
biofilm development regulator YmgB/AriR family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015387234.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:YP_005226372.1
COORDINATES: similar to AA sequence:RefSeq:WP_007798759.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011998944.1
COORDINATES: similar to AA sequence:RefSeq:WP_004151190.1
COORDINATES: similar to AA sequence:RefSeq:WP_007767434.1
COORDINATES: similar to AA sequence:RefSeq:WP_014332944.1
COORDINATES: similar to AA sequence:RefSeq:WP_009307581.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011998941.1
COORDINATES: similar to AA sequence:RefSeq:WP_012815779.1
COORDINATES: similar to AA sequence:RefSeq:WP_011998940.1
ABC transporter six-transmembrane domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007750841.1
COORDINATES: similar to AA sequence:RefSeq:WP_011998937.1
COORDINATES: similar to AA sequence:RefSeq:WP_012815775.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_001696729.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016233494.1
GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
type II toxin-antitoxin system HigB family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_011998932.1
COORDINATES: similar to AA sequence:RefSeq:WP_007798711.1
COORDINATES: similar to AA sequence:RefSeq:WP_007727715.1
COORDINATES: similar to AA sequence:RefSeq:WP_007705721.1
COORDINATES: similar to AA sequence:RefSeq:WP_004026564.1
COORDINATES: similar to AA sequence:RefSeq:WP_007670465.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007705712.1
COORDINATES: similar to AA sequence:RefSeq:WP_007705710.1
ParB/Srx family N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007705709.1
COORDINATES: similar to AA sequence:RefSeq:WP_007727699.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015740943.1
COORDINATES: similar to AA sequence:RefSeq:WP_004252172.1
zinc ABC transporter substrate-binding protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024728.2
COORDINATES: similar to AA sequence:RefSeq:WP_012822803.1
COORDINATES: similar to AA sequence:RefSeq:WP_008500123.1
COORDINATES: similar to AA sequence:RefSeq:WP_007706046.1
ShlB/FhaC/HecB family hemolysin secretion/activation protein
COORDINATES: similar to AA sequence:RefSeq:WP_007706040.1
RepB family plasmid replication initiator protein
COORDINATES: similar to AA sequence:RefSeq:WP_003855844.1
COORDINATES: similar to AA sequence:RefSeq:WP_015387283.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_003859533.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007669613.1
COORDINATES: similar to AA sequence:RefSeq:WP_011999026.1
IucA/IucC family siderophore biosynthesis protein
COORDINATES: similar to AA sequence:RefSeq:WP_001287497.1
COORDINATES: similar to AA sequence:RefSeq:WP_007873344.1
COORDINATES: similar to AA sequence:RefSeq:WP_007706017.1
COORDINATES: similar to AA sequence:RefSeq:WP_015387276.1
COORDINATES: similar to AA sequence:RefSeq:WP_015740474.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007873333.1
type II toxin-antitoxin system HipA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_011999019.1
GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]
GO:0005992 - trehalose biosynthetic process [Evidence IEA]
malto-oligosyltrehalose trehalohydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_015387273.1
GO:0047470 - (1,4)-alpha-D-glucan 1-alpha-D-glucosylmutase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017802039.1
GO:0004133 - glycogen debranching enzyme activity [Evidence IEA]
GO:0005980 - glycogen catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007887724.1
autotransporter domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007705990.1
COORDINATES: similar to AA sequence:RefSeq:YP_005224890.1
COORDINATES: similar to AA sequence:RefSeq:WP_000131273.1
GO:0015444 - P-type magnesium transporter activity [Evidence IEA]
GO:0015693 - magnesium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012815845.1
COORDINATES: similar to AA sequence:RefSeq:WP_007873301.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007798897.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012815840.1
COORDINATES: similar to AA sequence:RefSeq:WP_007755265.1
COORDINATES: similar to AA sequence:RefSeq:WP_012815837.1
COORDINATES: similar to AA sequence:RefSeq:WP_012815836.1
COORDINATES: similar to AA sequence:RefSeq:WP_007755257.1
COORDINATES: similar to AA sequence:RefSeq:WP_013318007.1
COORDINATES: similar to AA sequence:RefSeq:WP_007733166.1
COORDINATES: similar to AA sequence:RefSeq:WP_007755253.1
COORDINATES: similar to AA sequence:RefSeq:WP_007733164.1
COORDINATES: similar to AA sequence:RefSeq:WP_007798885.1
COORDINATES: similar to AA sequence:RefSeq:WP_012815832.1
COORDINATES: similar to AA sequence:RefSeq:WP_012815829.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015387259.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007780970.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007712581.1
PTS beta-glucoside transporter subunit IIABC
COORDINATES: similar to AA sequence:RefSeq:WP_004864750.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011999001.1
COORDINATES: similar to AA sequence:RefSeq:WP_007873268.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007873266.1
iron chelate uptake ABC transporter family permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007767577.1
COORDINATES: similar to AA sequence:RefSeq:NP_309899.1
COORDINATES: similar to AA sequence:RefSeq:WP_007873263.1
COORDINATES: similar to AA sequence:RefSeq:WP_007873262.1
COORDINATES: similar to AA sequence:RefSeq:WP_007780653.1
COORDINATES: similar to AA sequence:RefSeq:WP_008786847.1
COORDINATES: similar to AA sequence:RefSeq:WP_015387252.1
COORDINATES: similar to AA sequence:RefSeq:WP_011998990.1
thiol:disulfide interchange protein DsbG
COORDINATES: similar to AA sequence:RefSeq:WP_007873218.1
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007873206.1
COORDINATES: similar to AA sequence:RefSeq:WP_007727610.1
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007780670.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_007873204.1
COORDINATES: similar to AA sequence:RefSeq:WP_012815807.1
GO:0008794 - arsenate reductase (glutaredoxin) activity [Evidence IEA]
This arsenate reductase requires both glutathione and glutaredoxin to convert arsenate to arsenite, after which the efflux transporter formed by ArsA and ArsB can extrude the arsenite from the cell, providing resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012422.2
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012015801.1
COORDINATES: similar to AA sequence:RefSeq:WP_000697437.1
COORDINATES: similar to AA sequence:RefSeq:WP_012768707.1
COORDINATES: similar to AA sequence:RefSeq:WP_016161079.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011998966.1
COORDINATES: similar to AA sequence:RefSeq:WP_015369713.1
type VI secretion system tube protein Hcp
COORDINATES: similar to AA sequence:RefSeq:WP_007798802.1
COORDINATES: similar to AA sequence:RefSeq:WP_011998962.1
sensor domain-containing diguanylate cyclase
COORDINATES: similar to AA sequence:RefSeq:WP_007727571.1
COORDINATES: similar to AA sequence:RefSeq:WP_015387240.1
COORDINATES: similar to AA sequence:RefSeq:WP_007854484.1
GO:0008982 - protein-N(PI)-phosphohistidine-sugar phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007854483.1
COORDINATES: similar to AA sequence:RefSeq:WP_007798782.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007705788.1
COORDINATES: similar to AA sequence:RefSeq:WP_011998954.1
COORDINATES: similar to AA sequence:RefSeq:WP_007705786.1
COORDINATES: similar to AA sequence:RefSeq:WP_007750777.1
thioredoxin fold domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007767478.1
COORDINATES: similar to AA sequence:RefSeq:WP_015387237.1
COORDINATES: similar to AA sequence:RefSeq:WP_007873161.1