Caballeronia grimmiae strain Lep1A1 plasmid p5, complete sequence.
type: Entry
definition: Caballeronia grimmiae strain Lep1A1 plasmid p5, complete sequence.
sequence version: NZ_CP084278.1
sequence date: 2023-04-27
sequence: sequence
division: CON
label: NZ_CP084278.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN21547026
keyword: RefSeq
source: Caballeronia grimmiae
organism: Caballeronia grimmiae
taxonomy: Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Caballeronia.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP084278.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2020\nAssembly Method :: SPAdes v. 3.13.0; Unicycler v. 2.4.8-beta\nAssembly Name :: Lep1A1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 60x\nSequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/27/2023 07:33:05\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,237\nCDSs (total) :: 6,157\nGenes (coding) :: 5,985\nCDSs (with protein) :: 5,985\nGenes (RNA) :: 80\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 61\nncRNAs :: 4\nPseudo Genes (total) :: 172\nCDSs (without protein) :: 172\nPseudo Genes (ambiguous residues) :: 0 of 172\nPseudo Genes (frameshifted) :: 85 of 172\nPseudo Genes (incomplete) :: 110 of 172\nPseudo Genes (internal stop) :: 35 of 172\nPseudo Genes (multiple problems) :: 47 of 172\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 65095
topology: circular
so has quality: SO_0000988
location: 1..65095
location: region:1-65095:1
RO_0002162: 1071679

NZ_CP084278
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN21547026
type: BioSample
SIO_000068: biosample

1
title: Prevalence and functional effects of a genomic island for insect symbiosis within Burkholderiaceae
author: Stillson, P.T.
author: Baltrus, D.A.
author: Ravenscraft, A.
journal: Unpublished

2
title: Direct Submission
author: Stillson, P.T.
author: Baltrus, D.A.
author: Ravenscraft, A.
journal: Submitted (22-SEP-2021) Biology Department, University of Texas at Arlington, 501 S. Nedderman Dr., Arlington, TX 76019, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:65095:1
position: 65095
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-65095:1:source
so part of: sequence
organism: Caballeronia grimmiae
mol type: genomic DNA
strain: Lep1A1
host: Leptoglossus zonatus
plasmid: p5
country: USA: California
collection date: 2018
collected by: A. Ravenscraft

1071679
type: Taxonomy
SIO_000068: taxonomy

LDZ21_RS30815
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS30815
so part of: sequence
location: complement(join(64513..65095,1..200))
location: region:1-65095:-1
so has part: feature:1-200:-1:exon
so has part: feature:64513-65095:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:65095:-1
position: 65095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-200:-1:exon

position:200:-1
position: 200
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:64513-65095:-1:exon

position:64513:-1
position: 64513
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LDZ21_RS30815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS30815
function: involved in mating pair formation
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006122481.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TrbF
translation: MSIADTLKGLIFKKPANSAEPRDPRRSKEPLAGGRRAGEAENPYLAARRTWNDHVGSVVSQRQTWQVIGILSLLIALAGVGGVIHIGSQSKFIPYVVEVDKLGQTVAAGPVQAAGKADPRVIHAAVADWMSCARMVSPDVALQRKCVFKAYSMLAPNDPATPKMNEWLNGTPDSSPFKRAEKEMVSVEIKTVIPQTPDTWQVEWVETTRDRQGTLKGQPVTWRALVTTYIAEVTPNTTDEQLRNNPLSIYVRDYSWSRIQ
SIO_010081: LDZ21_RS30815
subclass of: SO_0000673
so part of: LDZ21_RS30815
location: complement(join(64513..65095,1..200))
location: region:1-65095:-1
so has part: feature:1-200:-1:exon
so has part: feature:64513-65095:-1:exon

WP_011114048.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-200:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:64513-65095:-1:exon

LDZ21_RS30820
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS30820
so part of: sequence
location: complement(197..2755)
location: region:197-2755:-1
so has part: feature:197-2755:-1:exon
subclass of: SO_0000010

position:197:-1
position: 197
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2755:-1
position: 2755
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:197-2755:-1:exon

LDZ21_RS30820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS30820
function: involved in mating pair formation
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011013264.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: VirB4 family type IV secretion/conjugal transfer ATPase
translation: MIEAIAIAIAVLGAVLLLILFARIRAVDAELKLKKHRAKDAGLADLLNYAAVVDDGVIVGKNGSFMAAWLYKGDDNASSTEEQREMVSFRINQALAGLGNGWMVHVDAVRRPAPNYSERGVSSFPDSVSFAIDEERRRLFEGLGAMFEGYFVLTVTWFPPVLAQRKFVELMFDDDAVAPDHTARTTGLIAQFKREITSLESRLSSAVKMTRLRGQKVVSEEGREVTHDDFLSWLQFCVTGLHHPVMLPSNPMYLDAVIGGQELWGGVVPKIGRKFIQVVAIEGFPLESTPGVLSALAELPSEYRWSSRFIFMDQHESLKHLDKFRKKWKQKIRGFFDQVFNTNTGSINQDAAAMVGDAEAAIAEVNSGLVAAGYYTSVVVLMDEDRERLAASALLVEKAVNRLAFAARIETINTLDAYLGSLPGHGVENVRRPLINTMNLADLLPTSSIWTGSATAPCPMYPPLSPALMHCVTVGATPFRLNLHVRDLGHTFMFGPTGAGKSTHLGIIAAQLRRYAGMSIYAFDKGMSMYPLAAGIRAATKGKSGLHFTVAADDDRLAFCPLQFLETKGDRAWAMEWIDTILALNGVNTTPAQRNEIGNAIMSMHASGARTLSEFSVTIQDEAIREAIKQYTVDGSMGHLLDAEEDGLSLSDFTVFEIEELMNLGEKFALPVLLYLFRRIERALKGQPSVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAANSGILDVIVESTATKIFLPNVYARDEDTSALYRRMGLNARQIEILATAIPKRQYYYVSENGRRLYDLALGPMALAFVGASDKESVATIKSLEAKFGHEWVHEWLAGRGLNLNDYLEAA
SIO_010081: LDZ21_RS30820
subclass of: SO_0000673
so part of: LDZ21_RS30820
location: complement(197..2755)
location: region:197-2755:-1
so has part: feature:197-2755:-1:exon

WP_011114047.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:197-2755:-1:exon

LDZ21_RS30825
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS30825
so part of: sequence
location: complement(2752..3063)
location: region:2752-3063:-1
so has part: feature:2752-3063:-1:exon
subclass of: SO_0000010

position:2752:-1
position: 2752
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3063:-1
position: 3063
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2752-3063:-1:exon

LDZ21_RS30825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS30825
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010676131.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TrbD
translation: MALRAIPIRRAGNRENLFMGGDRELVMFSGLLAGALIFSAQEVRATVFGIALWFGALFALRLMAKADPKLRHVYLRHRRYKPYYPARSTPFRDNTPSQGKQYK
SIO_010081: LDZ21_RS30825
subclass of: SO_0000673
so part of: LDZ21_RS30825
location: complement(2752..3063)
location: region:2752-3063:-1
so has part: feature:2752-3063:-1:exon

WP_001207961.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2752-3063:-1:exon

LDZ21_RS30830
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
gene: trbC
locus tag: LDZ21_RS30830
so part of: sequence
location: complement(3067..3531)
location: region:3067-3531:-1
so has part: feature:3067-3531:-1:exon
subclass of: SO_0000010

position:3067:-1
position: 3067
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3531:-1
position: 3531
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3067-3531:-1:exon

LDZ21_RS30830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
gene: trbC
locus tag: LDZ21_RS30830
function: involved in mating pair formation
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011114046.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer system pilin TrbC
translation: MQATFPAFRLNRNALFYMGLFALLAFFLLAPQHAFASEGTGGSLPYESWLTNLRNSVTGPVAFALSIIGIVVAGGILIFGGELNGFFRTLIFIVLVMALLVGAQNMMSTFFGRGAEIAALTDGALHQVKVAALDVAGFPGEAVMRWAERGHIAG
SIO_010081: LDZ21_RS30830
subclass of: SO_0000673
so part of: LDZ21_RS30830
location: complement(3067..3531)
location: region:3067-3531:-1
so has part: feature:3067-3531:-1:exon

WP_011114046.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3067-3531:-1:exon

LDZ21_RS30835
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
gene: trbB
locus tag: LDZ21_RS30835
so part of: sequence
location: complement(3548..4510)
location: region:3548-4510:-1
so has part: feature:3548-4510:-1:exon
subclass of: SO_0000010

position:3548:-1
position: 3548
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4510:-1
position: 4510
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3548-4510:-1:exon

LDZ21_RS30835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
gene: trbB
locus tag: LDZ21_RS30835
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000132020.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type conjugative transfer ATPase TrbB
translation: MTDQKPEHNSIKERAKKKLERDMGPELLAALNDPKTVEIMLNADGKLWLERLGEPMKCIGTLRVAQAQAIIETIAGYHGKEVTRSKPILEGELPLDGSRFAGQLPPVVPAPTFAIRKKAVAIFTLDQYVERGIMTAPQREALIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGEVRGPEALDLLMAWNTGHEGGAATLHANNAKAGLDRLAMLISMHPDSPKPIEPLIGEAVHVVVHIARVEGSRRIQEILEVSGFANGQYITKTL
SIO_010081: LDZ21_RS30835
subclass of: SO_0000673
so part of: LDZ21_RS30835
location: complement(3548..4510)
location: region:3548-4510:-1
so has part: feature:3548-4510:-1:exon

WP_000132020.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3548-4510:-1:exon

LDZ21_RS30840
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS30840
so part of: sequence
location: complement(4820..5182)
location: region:4820-5182:-1
so has part: feature:4820-5182:-1:exon
subclass of: SO_0000010

position:4820:-1
position: 4820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5182:-1
position: 5182
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4820-5182:-1:exon

LDZ21_RS30840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS30840
function: regulatory protein for mating pair formation
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000283041.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transcriptional regulator
translation: MYNYIFFTNVLRLLDERHMTKKELSDRSGVSISFLSDLTTGKANPSLKVMEDIAQALETPLPLLLESTDLDKEALDTLAGGKAPRSLPPGFERVAAVLPEHQAFIVKKWGEATRKKLRGS
SIO_010081: LDZ21_RS30840
subclass of: SO_0000673
so part of: LDZ21_RS30840
location: complement(4820..5182)
location: region:4820-5182:-1
so has part: feature:4820-5182:-1:exon

WP_011114045.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4820-5182:-1:exon

LDZ21_RS30845
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS30845
so part of: sequence
location: 5296..5637
location: region:5296-5637:1
so has part: feature:5296-5637:1:exon
subclass of: SO_0000010

position:5296:1
position: 5296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5637:1
position: 5637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5296-5637:1:exon

LDZ21_RS30845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS30845
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000019167.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: single-stranded DNA-binding protein
translation: MSHNLFQFIGNLTRDTDVRHSENSARAVFDLAVNRVWRNAAGAKQEQTDFFRIKSFGGLAENAGKYLGKGSKVFVQGRIEPTKYEKDGKTEYGFDFIAEEIEYLDTKAPGGGQ
SIO_010081: LDZ21_RS30845
subclass of: SO_0000673
so part of: LDZ21_RS30845
location: 5296..5637
location: region:5296-5637:1
so has part: feature:5296-5637:1:exon

WP_000019167.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5296-5637:1:exon

LDZ21_RS30850
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
gene: trfA
locus tag: LDZ21_RS30850
so part of: sequence
location: 5684..6904
location: region:5684-6904:1
so has part: feature:5684-6904:1:exon
subclass of: SO_0000010

position:5684:1
position: 5684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6904:1
position: 6904
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5684-6904:1:exon

LDZ21_RS30850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
gene: trfA
locus tag: LDZ21_RS30850
function: initiation of replication
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011114072.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid replication initiator TrfA
translation: MQNEFNEQEYRRKLIEGGLSEADATDLAARTAAARRDSGSAGGAFRPAGSLFELPATAGDNEAALPPKLPTPASAAVERSERMAQESAELARTMGLPPEPRTAVNKMAEQIGALAQDKRSSAMATKKRTAGGELAEKVSEAKQTALLKHTKQQIKDMQLSLFDLAPWPDHMRALPNDFGRSAIFTVRNKKVPRAALQGQSIYHVNKDVEITYTGIELRADDDELVFAQVLEYAKRTALGEPVSFTFYELCQDLDWSINGRYYTRAEECLTRLQASAMQFSSQRIGRLESVSLIRRFRVLDRGKRTSRCQVEIDAEIVVLFAGDHYTKFVWEKYRKLSPTARRMFDYFATHKEPYPLKLETFRLMCGSDSTRPKKWREQVGEACDELRENGLVESAWVNDDLVHCKR
SIO_010081: LDZ21_RS30850
subclass of: SO_0000673
so part of: LDZ21_RS30850
location: 5684..6904
location: region:5684-6904:1
so has part: feature:5684-6904:1:exon

WP_011114072.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5684-6904:1:exon

LDZ21_RS30855
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS30855
so part of: sequence
location: complement(7017..7451)
location: region:7017-7451:-1
so has part: feature:7017-7451:-1:exon
subclass of: SO_0000010

position:7017:-1
position: 7017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7451:-1
position: 7451
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7017-7451:-1:exon

LDZ21_RS30855
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS30855
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005229638.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: mercury resistance transcriptional regulator MerR
translation: MENNLENLTIGVFAKAAGVNVETIRFYQRKGLLLEPDKPYGSIRRYGEADVTRVRFVKSAQRLGFSLDEIAELLRLEDGTHCEEASSLAEHKLKDVREKMADLARMEAVLSELVCACHARRGNVSCPLIASLQGGASLAGSAMP
SIO_010081: LDZ21_RS30855
subclass of: SO_0000673
so part of: LDZ21_RS30855
location: complement(7017..7451)
location: region:7017-7451:-1
so has part: feature:7017-7451:-1:exon

WP_003131969.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7017-7451:-1:exon

LDZ21_RS30860
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
gene: merT
locus tag: LDZ21_RS30860
so part of: sequence
location: 7523..7873
location: region:7523-7873:1
so has part: feature:7523-7873:1:exon
subclass of: SO_0000010

position:7523:1
position: 7523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7873:1
position: 7873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7523-7873:1:exon

LDZ21_RS30860
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
gene: merT
locus tag: LDZ21_RS30860
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005229639.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: mercuric ion transporter MerT
translation: MSEPKTGRGALFTGGLAAILASACCLGPLVLIALGFSGAWIGNLAVLEPYRPIFIGVALVALFFAWRRIYRQAAACKPGEVCAIPQVRATYKLIFWIVAALVLVALGFPYVMPFFY
SIO_010081: LDZ21_RS30860
subclass of: SO_0000673
so part of: LDZ21_RS30860
location: 7523..7873
location: region:7523-7873:1
so has part: feature:7523-7873:1:exon

WP_003131974.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7523-7873:1:exon

LDZ21_RS30865
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
gene: merP
locus tag: LDZ21_RS30865
so part of: sequence
location: 7886..8161
location: region:7886-8161:1
so has part: feature:7886-8161:1:exon
subclass of: SO_0000010

position:7886:1
position: 7886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8161:1
position: 8161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7886-8161:1:exon

LDZ21_RS30865
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
gene: merP
locus tag: LDZ21_RS30865
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005229640.1
GO function: GO:0045340 - mercury ion binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: mercury resistance system periplasmic binding protein MerP
translation: MKKLFASLALAAVVAPVWAATQTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGYPSSVKQ
SIO_010081: LDZ21_RS30865
subclass of: SO_0000673
so part of: LDZ21_RS30865
location: 7886..8161
location: region:7886-8161:1
so has part: feature:7886-8161:1:exon

WP_003131987.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7886-8161:1:exon

LDZ21_RS30870
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
gene: merA
locus tag: LDZ21_RS30870
so part of: sequence
location: 8233..9918
location: region:8233-9918:1
so has part: feature:8233-9918:1:exon
subclass of: SO_0000010

position:8233:1
position: 8233
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9918:1
position: 9918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8233-9918:1:exon

LDZ21_RS30870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
gene: merA
locus tag: LDZ21_RS30870
EC number: 1.16.1.1
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013722692.1
GO function: GO:0016152 - mercury (II) reductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: mercury(II) reductase
translation: MTHLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAGLGYKATLADAPLADNRVGLLDKVRGWMAAAEKHSGNEPPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIPGLKESPYWTSTEALASDTIPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTTHGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIAIDQGMRTSNPNIYAAGDCTDQPQFVYVAAAAGTRAAINMTGGDAALDLTAMPAVVFTDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSHRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAAQTFNKDVKQLSCCAG
SIO_010081: LDZ21_RS30870
subclass of: SO_0000673
so part of: LDZ21_RS30870
location: 8233..9918
location: region:8233-9918:1
so has part: feature:8233-9918:1:exon

WP_003158917.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8233-9918:1:exon

LDZ21_RS30875
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
gene: merD
locus tag: LDZ21_RS30875
so part of: sequence
location: 9936..10301
location: region:9936-10301:1
so has part: feature:9936-10301:1:exon
subclass of: SO_0000010

position:9936:1
position: 9936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10301:1
position: 10301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9936-10301:1:exon

LDZ21_RS30875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
gene: merD
locus tag: LDZ21_RS30875
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001277466.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: mercury resistance co-regulator MerD
translation: MNAYTVSRLALDAGVSVHIVRDYLLRGLLRPVACTPGGYGLFDDAALQRLCFVRAAFEAGIGLDALARLCRALDAADGDEAAAQLALLRQFVERRREALADLEVQLATLPTEPAQHAESLP
SIO_010081: LDZ21_RS30875
subclass of: SO_0000673
so part of: LDZ21_RS30875
location: 9936..10301
location: region:9936-10301:1
so has part: feature:9936-10301:1:exon

WP_000995360.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9936-10301:1:exon

LDZ21_RS30880
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
gene: merE
locus tag: LDZ21_RS30880
so part of: sequence
location: 10298..10534
location: region:10298-10534:1
so has part: feature:10298-10534:1:exon
subclass of: SO_0000010

position:10298:1
position: 10298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10534:1
position: 10534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10298-10534:1:exon

LDZ21_RS30880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
gene: merE
locus tag: LDZ21_RS30880
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003132004.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: broad-spectrum mercury transporter MerE
translation: MNNPERLPSETHKPITGYLWGGLAVLTCPCHLPILAVVLAGTTAGAFLGEHWVIAALGLTGLFLLSLSRALRAFRERE
SIO_010081: LDZ21_RS30880
subclass of: SO_0000673
so part of: LDZ21_RS30880
location: 10298..10534
location: region:10298-10534:1
so has part: feature:10298-10534:1:exon

WP_003132004.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10298-10534:1:exon

LDZ21_RS30885
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS30885
pseudo: true
so part of: sequence
location: 10531..>11064
location: region:10531-11064:1
so has part: feature:10531-11064:1:exon
subclass of: SO_0000010

position:10531:1
position: 10531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11064:1
position: 11064
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10531-11064:1:exon

LDZ21_RS30885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS30885
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003132006.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: cyclic diguanylate phosphodiesterase
SIO_010081: LDZ21_RS30885
subclass of: SO_0000673
so part of: LDZ21_RS30885
location: 10531..>11064
location: region:10531-11064:1
so has part: feature:10531-11064:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10531-11064:1:exon

LDZ21_RS30890
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS30890
so part of: sequence
location: 11211..14126
location: region:11211-14126:1
so has part: feature:11211-14126:1:exon
subclass of: SO_0000010

position:11211:1
position: 11211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14126:1
position: 14126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11211-14126:1:exon

LDZ21_RS30890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS30890
inference: COORDINATES: similar to AA sequence:RefSeq:WP_086558120.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Tn3-like element IS1071 family transposase
translation: MQGWHTTFLGMRGLPRDISDFEMKAFFTFDGAERDAINARRGDSHKLGLALHIGFLRMSGRLLGAFRVIPVALWRHLGNELGIAAPEVASLRAMYERGRTLFDHQQVACTVLGFQWMSEHQRRSLVRELRDEVARCADRDQLLVRARQWLYKNKLVIVHERAIRTLIAAALAQLEVETGTAIAASVDPATLDRWRASVSELRPDGQTQQSWLWAAPAKHSTRQISEVLERIDLLYTLDVHKHLADIPDLILRRYARRLVSRPPSAGAKIKEPARTVEVACFLRYCLFTTTDQLILMVQRRIADLWRQAAADVPATVNWAAMYKTLLGELVALSAQGAVPDAELRARLEALITETQKRKPPSRASLVREGLIDGIRPVRSLLVAIAKLPWQATGEHPAIEYLAKLQALYLKGSRKLPVEVVAPSLGMIWQVSISSPDRERAFQALEVATLFALRRAVRNGSVWIEHSLSFRGRARLFFTDERWQAESKKHYARLSLPSKAATFLKPLLARVTAGVDAVAAAARSGVLRVDDELHLSPLPAEDEDPEVTKLRAALDHRIGEVQLPEVILAVDAQVRFSWIMLGREPRSTDELLMVYAGIMAHGTSLTAVECARMIPQLSATSIRQAMRWARDERRLSQACQAVLEFMQRHPIAATWGRSDLASSDMMSMETTKRVWQARLDPRRNTPSIGIYSHVKDRWGIFHAQPFVLNERQAGVAIEGVIRQEKLETSQLAVDTHGYTDFAMSHARLLGFDLCPRLKELKQRHLFVPRGTKVPAEIAAVCEANVDVALIEKHWDSLVHLAASVMSGHASAVAALARFGSAAQGDPIYEAGVQLGRLLRTAFLADYFVKDAFRNELRRVLNRGEAVNALKRAIYTGRISPAQAKRVDEMQAVADALSLMANIVMAWNTSQMQAVLDRWSNRRQVIPPELIGKIAPTRLESINLRGVFRFPVDRYADQILPSRPNASITGTNG
SIO_010081: LDZ21_RS30890
subclass of: SO_0000673
so part of: LDZ21_RS30890
location: 11211..14126
location: region:11211-14126:1
so has part: feature:11211-14126:1:exon

WP_003049965.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11211-14126:1:exon

LDZ21_RS30895
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS30895
pseudo: true
so part of: sequence
location: <14270..14863
location: region:14270-14863:1
so has part: feature:14270-14863:1:exon
subclass of: SO_0000010

position:14270:1
position: 14270
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:14863:1
position: 14863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14270-14863:1:exon

LDZ21_RS30895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS30895
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011805354.1
GO function: GO:0016491 - oxidoreductase activity [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: FAD-dependent oxidoreductase
SIO_010081: LDZ21_RS30895
subclass of: SO_0000673
so part of: LDZ21_RS30895
location: <14270..14863
location: region:14270-14863:1
so has part: feature:14270-14863:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14270-14863:1:exon

LDZ21_RS30900
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS30900
so part of: sequence
location: 14972..16519
location: region:14972-16519:1
so has part: feature:14972-16519:1:exon
subclass of: SO_0000010

position:14972:1
position: 14972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16519:1
position: 16519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14972-16519:1:exon

LDZ21_RS30900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS30900
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008328818.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS91-like element ISPps1 family transposase
translation: MSATSKPKLYNPRHPERTLLYQMVAEHYETWLELASAGQFDGQGDHHTPKPFVRKAFAKYLECGIFAHGFARARCGDCGHDYFVAFSCKGRGVCPSCTTRRMVETAAHLSDHVFPRLPVRQWVLSVPKRLRYFMQRDGAVLSMVLRIFLRVIAQTLQTHSPGAAHMDKAGLHIGAIAFIHRFGSSLNEHVHFHVCVVDGVFEEVEGEGDADATPRISSPGVIFHAATGIDAATVAPVQTTLQKRILRAFVARGLLENCDAKDMLGYKHSGFSVDAGVCIEAHDRAALERLLRYCARPPFSMERLRKEGSKLVYRCAKQRSEPTSDKRGAKADELHLTPLELIDRIAALVPPPRTHRHRYFGVLAPNSPLRAAVTALAQPAASQPATVETAQPGAGVPGVAAPGNAATPTPEPEARPKRAAHYLWAVLIARIYEAFPLLCPMCGGQMRIIAFITHSAEIRHILNHIGVESAPPHITPARGPPLWEGCDAPVDDGAQGEPDWDLAAQPDEVDQRVNW
SIO_010081: LDZ21_RS30900
subclass of: SO_0000673
so part of: LDZ21_RS30900
location: 14972..16519
location: region:14972-16519:1
so has part: feature:14972-16519:1:exon

WP_011117152.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14972-16519:1:exon

LDZ21_RS30905
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS30905
so part of: sequence
location: 16839..17318
location: region:16839-17318:1
so has part: feature:16839-17318:1:exon
subclass of: SO_0000010

position:16839:1
position: 16839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17318:1
position: 17318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16839-17318:1:exon

LDZ21_RS30905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS30905
inference: COORDINATES: protein motif:HMM:NF013465.2
GO function: GO:0046872 - metal ion binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: zinc ABC transporter substrate-binding protein
translation: MRDALIAADPDNTDAYTANAEAYLGELETLDAWVKSEVAKIPEEDRKLVTSHDALGYYTDAYGFTIVGTVLGLTTEEAEPSAQQVAELVQQIQDSGVKAIFAETIENPAVIEAIAAEAGVVVGPELYTDALGEAGSDGDTYIKMITFNTNAIVSAILGE
SIO_010081: LDZ21_RS30905
subclass of: SO_0000673
so part of: LDZ21_RS30905
location: 16839..17318
location: region:16839-17318:1
so has part: feature:16839-17318:1:exon

WP_232476759.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16839-17318:1:exon

LDZ21_RS30910
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
gene: aroA
locus tag: LDZ21_RS30910
so part of: sequence
location: 17469..18782
location: region:17469-18782:1
so has part: feature:17469-18782:1:exon
subclass of: SO_0000010

position:17469:1
position: 17469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18782:1
position: 18782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17469-18782:1:exon

LDZ21_RS30910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
gene: aroA
locus tag: LDZ21_RS30910
EC number: 2.5.1.19
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008477529.1
GO function: GO:0003866 - 3-phosphoshikimate 1-carboxyvinyltransferase activity [Evidence IEA]
GO process: GO:0009423 - chorismate biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 3-phosphoshikimate 1-carboxyvinyltransferase
translation: MASSTATAPDRIEMIPVTQPVIGTARVPGSKSITNRALPIAGLANGHSSLTGALFSDDTHYMAEGLAALGIDVEAFPEDDRFEVDGGDGQFPATEADLFIGNSGTTARFLTAILAIGHGTYRLDGVPRMRQRPIGPLLSALRQLDVDATSEAGTDAPPIIVRANGLAGGRAVVPGDLSSQFFTGLLLAAPYARDGVTIEVEGELVSKPYITITADVMRAFGVETEIDDVDWKTFRVAPGQRYAARDYHIEPDASNASYFFAAAAVTGGEVRVNGLGTRSTQGDLQFVRVLEQMGATVTMTETSTTVRGPQDGVLHGGDFDFNVISDTAQTLAAIAPYADAPITIRGVAHNRVKETDRIADVATELRRLGQVVDEFQDGLTIHPQPVTPAEVHTYDDHRMAMSFALTGLRAPGVTILDPGCTAKTFPDYFDRLGELVK
SIO_010081: LDZ21_RS30910
subclass of: SO_0000673
so part of: LDZ21_RS30910
location: 17469..18782
location: region:17469-18782:1
so has part: feature:17469-18782:1:exon

WP_087748615.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17469-18782:1:exon

regulatory
type: Feature
subclass of: SO_0000001
RO_0002162: 1071679
regulatory class: riboswitch
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF00162
inference: COORDINATES: profile:INFERNAL:1.1.4
note: SAM riboswitch class I; Derived by automated computational analysis using gene prediction method: cmsearch.
bound moiety: S-adenosylmethionine
so part of: sequence
location: 18929..19033
location: region:18929-19033:1
so has part: feature:18929-19033:1:region

position:18929:1
position: 18929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19033:1
position: 19033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18929-19033:1:region

LDZ21_RS30915
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS30915
so part of: sequence
location: 19334..20047
location: region:19334-20047:1
so has part: feature:19334-20047:1:exon
subclass of: SO_0000010

position:19334:1
position: 19334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20047:1
position: 20047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19334-20047:1:exon

LDZ21_RS30915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS30915
inference: COORDINATES: protein motif:HMM:NF012706.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter substrate-binding protein
translation: MSQTPSTQPLRRLVDRFRAGDLSRRDFVQRATALGVGLAAANVIASEVAAQSATPSDAASPVASPVAGFPDDGTEGQTRGAGGELRIIQSQAPSVLSTHRSTGSKDVYAASLVLEPLLTYFADGSLGPQLLASVPSVEDGTLSEDLTQVTLTLKEGLLWNDGEPVTSNDIVFTWKWVTTAENSSSNIELWGLIETIETTDDLTAVVTFSSPQVALSAASLPMALPALAAATVGTTTL
SIO_010081: LDZ21_RS30915
subclass of: SO_0000673
so part of: LDZ21_RS30915
location: 19334..20047
location: region:19334-20047:1
so has part: feature:19334-20047:1:exon

WP_087748614.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19334-20047:1:exon

LDZ21_RS30920
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS30920
pseudo: true
so part of: sequence
location: <19975..21342
location: region:19975-21342:1
so has part: feature:19975-21342:1:exon
subclass of: SO_0000010

position:19975:1
position: 19975
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:21342:1
position: 21342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19975-21342:1:exon

LDZ21_RS30920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS30920
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008328818.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS91-like element ISPps1 family transposase
SIO_010081: LDZ21_RS30920
subclass of: SO_0000673
so part of: LDZ21_RS30920
location: <19975..21342
location: region:19975-21342:1
so has part: feature:19975-21342:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:19975-21342:1:exon

LDZ21_RS30925
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS30925
so part of: sequence
location: 21684..22559
location: region:21684-22559:1
so has part: feature:21684-22559:1:exon
subclass of: SO_0000010

position:21684:1
position: 21684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22559:1
position: 22559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21684-22559:1:exon

LDZ21_RS30925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS30925
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011841290.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: EamA family transporter
translation: MTVLSLSMVVLAALIHATWNLLAKRAAHAGTAFVGASTVVACVAYLPWVVWQLMHGGMPINAPVVACIVASGLLHLVYSMCLQKGYRVADLSVVYPVARGTGPLLSSVGAFVLLGEVPSLHGLLGLAAIVLGIGLICTDGHLAMFRKPGALAGVRWGGATGALIAGYTVVDAWGVKVLGVGPVVLDWFSNLVRLCVLAPWMLRNRAATVAAMRGHWWLAVAVGLLSPLSYILVLAALEMGAPVSVVAPTREMSMMVGALFGMLVLRERVGPGRAAGCVLVVLGVVLLSGAV
SIO_010081: LDZ21_RS30925
subclass of: SO_0000673
so part of: LDZ21_RS30925
location: 21684..22559
location: region:21684-22559:1
so has part: feature:21684-22559:1:exon

WP_047748381.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21684-22559:1:exon

LDZ21_RS30930
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS30930
so part of: sequence
location: 22768..23946
location: region:22768-23946:1
so has part: feature:22768-23946:1:exon
subclass of: SO_0000010

position:22768:1
position: 22768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23946:1
position: 23946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22768-23946:1:exon

LDZ21_RS30930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS30930
EC number: 2.7.2.1
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003067307.1
GO component: GO:0005737 - cytoplasm [Evidence IEA]
GO function: GO:0008776 - acetate kinase activity [Evidence IEA]
GO process: GO:0006083 - acetate metabolic process [Evidence IEA]; GO:0006113 - fermentation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: acetate/propionate family kinase
translation: MTSFIVVLNCGSSSIKFALFDATGTDRHPAWNGKVQGIGGPAPDFGATTVPVRPVDLGSEQPYTRALQTIREEIVRWLDGRSVAAVAHRVVHGGARYLAPQRVDAQVLAELKALVPLAPLHQPFALEAMEILLREQPGLPQVACFDTAFHRSLPLVEQVLPLPYAAFERGLRRYGFHGLSYEYMAVALQERHGALARGRTVVAHLGSGASLCAMQALQSVATTMGFSALDGLMMGTRTGALDPGAVLYLMEIEKLSLQQVGRVLYHESGLLGVSGISSDPRVLLEREADAPRAALALALYVRRIVREVGALAAVLGGLDLLVFTAGVGEHSVVLRQRICAALDWLGVALDEDANARNASVISAAASRVRVGVEPTNEEWVAARHAQEVLALG
SIO_010081: LDZ21_RS30930
subclass of: SO_0000673
so part of: LDZ21_RS30930
location: 22768..23946
location: region:22768-23946:1
so has part: feature:22768-23946:1:exon

WP_047748382.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22768-23946:1:exon

LDZ21_RS30935
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS30935
so part of: sequence
location: 24155..25507
location: region:24155-25507:1
so has part: feature:24155-25507:1:exon
subclass of: SO_0000010

position:24155:1
position: 24155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25507:1
position: 25507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24155-25507:1:exon

LDZ21_RS30935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS30935
inference: COORDINATES: protein motif:HMM:NF024491.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phospholipase D family protein
translation: MFLLDQGRDAFATRVLLAEAAERTLDVQYYIWRDDMSGRLLFEALRRAADRGVRVRLLLDDLGSAGLDATLADLDAHPRIEVRLFNPFVQRRFKPLGFVTDFGRANRRMHNKSFTADNQATVVGGRNVGDEYFGAEVDTLFVDLDVLAIGPVVQAVSEDFDRYWASGSSYPLALLLDAADATPPPPKDLQNLPDRTRQYLDAVARSSFVAELLAGRLPLHWAPVEFVSDDPAKGLGQADDADLMFARTARLVDTPAHSLKLVSPYFVPTARGTALFEKLAARGVDVAILTNALEATDVAVVHAGYMPWRVPLLRAGVQLYEMRREADTQAPDAKLRLGSSSAESLHAKTFVVDQRQLFVGSFNFDPRSARLNTELGFVIDSPALAAQLDTQLREKASARGYQLQLSPHGRLQWRDGRSEPPQLLEREPGAPLWLRLGLRLLSWLPIDWLL
SIO_010081: LDZ21_RS30935
subclass of: SO_0000673
so part of: LDZ21_RS30935
location: 24155..25507
location: region:24155-25507:1
so has part: feature:24155-25507:1:exon

WP_186437271.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24155-25507:1:exon

LDZ21_RS30940
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS30940
so part of: sequence
location: complement(25748..27073)
location: region:25748-27073:-1
so has part: feature:25748-27073:-1:exon
subclass of: SO_0000010

position:25748:-1
position: 25748
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27073:-1
position: 27073
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25748-27073:-1:exon

LDZ21_RS30940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS30940
EC number: 1.6.5.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013801159.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NAD(P)/FAD-dependent oxidoreductase
translation: MNTTAFGTPDTPGARVLVVGGGIAGLEIATSLGRRWRARPGAPTVTLLDRDAAHVWKPMLHTIAAGTRDIAQQQTTFVAQARDAGFVYQPGALSGLDRPQRLVQVAPLHAEDGRLLVPARRLPYDVLVLALGSQANDFGTPGVAEHCHAIDSRLQADAFSREVRLRMLQCVAMGQPLSIAIVGGGATGVELAAELVQLTETAEAYGATGLGERLTITLVEAGPRLLASFPQDISEAALRRLRALGVRVRTDTQVKAALAEGFELADGSLLRASLKVWAAGVKAPAVLADLDGLETNRNHQLLVHPSLQTTRDASIYAVGDCASLTLPGSERPLPPTAQVAHQQAQHLVRHLPQVLAAGATVPPFRFRDFGALVSLADYDAFGSLGQFGFFDGGIIRGRLAQLSHAMLYRSHQARLHGFWRGGLLWLADRIQARVRPPIRLD
SIO_010081: LDZ21_RS30940
subclass of: SO_0000673
so part of: LDZ21_RS30940
location: complement(25748..27073)
location: region:25748-27073:-1
so has part: feature:25748-27073:-1:exon

WP_047748383.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25748-27073:-1:exon

LDZ21_RS30945
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS30945
so part of: sequence
location: complement(27149..29353)
location: region:27149-29353:-1
so has part: feature:27149-29353:-1:exon
subclass of: SO_0000010

position:27149:-1
position: 27149
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29353:-1
position: 29353
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27149-29353:-1:exon

LDZ21_RS30945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS30945
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005796390.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: EAL domain-containing protein
translation: MCSQAERAGADRGTEQSPAWRVLVADHDLQVHAAARAAVQGLVLFGRPVVVLHAQDAARARHLLLQEDDLAVLLLDALLGGAASGGLAGFARQQAGRVNMRIVLRTEARSLALPMLARHDIGDHRRKAELSPQRLRAVLAGAVRAYVQHCRIDANRRSLARIVQSGAALMEQTDLRGFAAAVITQLAGLLGVAPQGLVCVRETGAASGCRVLAATGDFAARRRRLQTSNAALLLHRALVQGLPAHGGASGGLALPMGQHAGQAMAVYVHAPALREAPEPRLLEVFCAHLRTLRHNRSLLERLHQSAYHDALVSLPNRAHFTEQVDACARRGARDHILALLDIDDFSATNDVMGHRFGDRLLRAVAQQLAQALPPGVLLARVGSDTFGVLGSRAQVLPQRLLACVRQPLLLDGVPHKVSLTCGYVLLADAGQTGVDLFKDATIALQRAKREHRGQELRYAEQMGAEARERALLLSELRAAIDQARLYLVYQPQRDLRTQALVGLEALLRWRTADGRLVPPDRFIPVAEHSGLIVPLGQWVLATACATMRAMLDQGCAPRRMAVNVAVAQLRDPAFLATVRGALAEHGLQGRHLELEITESAAVLPTQLLESTLTALRAEGISIAVDDFGTGYSSLSYLERLPLDRIKIDRGFVRQLRQARSARIAETVAQLGRRLGLQVLAEGIEDADTLQALVDMGCHEGQGYHIAQPMEREALQAWLLREAVAQAGAAHAVAA
SIO_010081: LDZ21_RS30945
subclass of: SO_0000673
so part of: LDZ21_RS30945
location: complement(27149..29353)
location: region:27149-29353:-1
so has part: feature:27149-29353:-1:exon

WP_047748384.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27149-29353:-1:exon

LDZ21_RS30950
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS30950
pseudo: true
so part of: sequence
location: <29430..30092
location: region:29430-30092:1
so has part: feature:29430-30092:1:exon
subclass of: SO_0000010

position:29430:1
position: 29430
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:30092:1
position: 30092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29430-30092:1:exon

LDZ21_RS30950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS30950
inference: COORDINATES: similar to AA sequence:RefSeq:WP_086558120.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: Tn3 family transposase
SIO_010081: LDZ21_RS30950
subclass of: SO_0000673
so part of: LDZ21_RS30950
location: <29430..30092
location: region:29430-30092:1
so has part: feature:29430-30092:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:29430-30092:1:exon

LDZ21_RS30955
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS30955
so part of: sequence
location: complement(31214..31495)
location: region:31214-31495:-1
so has part: feature:31214-31495:-1:exon
subclass of: SO_0000010

position:31214:-1
position: 31214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31495:-1
position: 31495
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31214-31495:-1:exon

LDZ21_RS30955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS30955
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011114071.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system YafQ family toxin
translation: MRQIERTGQFKRDYKREAKGQHRATLDADLVPVLVALADDQPLEPRHRDHALTGDWKDHRDCHVKPDLVLIYQKPDADTLRLVRLGSHSELGL
SIO_010081: LDZ21_RS30955
subclass of: SO_0000673
so part of: LDZ21_RS30955
location: complement(31214..31495)
location: region:31214-31495:-1
so has part: feature:31214-31495:-1:exon

WP_011114071.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31214-31495:-1:exon

LDZ21_RS30960
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS30960
so part of: sequence
location: complement(31482..31745)
location: region:31482-31745:-1
so has part: feature:31482-31745:-1:exon
subclass of: SO_0000010

position:31482:-1
position: 31482
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31745:-1
position: 31745
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31482-31745:-1:exon

LDZ21_RS30960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS30960
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015913623.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelB/DinJ family antitoxin
translation: MAANQLVQTRIDGAIKEEAAAVLAAMGLTVSDAVRLLLTKVAQDKALPFEPLIPNATTIEAMKEARKGKLPRFATVNDLMADLHAAD
SIO_010081: LDZ21_RS30960
subclass of: SO_0000673
so part of: LDZ21_RS30960
location: complement(31482..31745)
location: region:31482-31745:-1
so has part: feature:31482-31745:-1:exon

WP_011114070.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31482-31745:-1:exon

LDZ21_RS30965
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS30965
so part of: sequence
location: 31918..32346
location: region:31918-32346:1
so has part: feature:31918-32346:1:exon
subclass of: SO_0000010

position:31918:1
position: 31918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32346:1
position: 32346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31918-32346:1:exon

LDZ21_RS30965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS30965
function: involved in stable inheritance
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011137973.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: antirestriction protein
translation: MNTQEQPVTASLVAEAQRLDFLPAYFGPRLMMRGEALVYAWLRRLCERYSGAYWHYYTLSDGGFYMAPDLADRLEIEVDGNGFRGELSADAAGIVATLFALGQLAAEAADTDAGDALIDRYHFLRGFAASHAEAAAIYRAID
SIO_010081: LDZ21_RS30965
subclass of: SO_0000673
so part of: LDZ21_RS30965
location: 31918..32346
location: region:31918-32346:1
so has part: feature:31918-32346:1:exon

WP_011114069.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31918-32346:1:exon

LDZ21_RS30970
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS30970
so part of: sequence
location: 32391..32609
location: region:32391-32609:1
so has part: feature:32391-32609:1:exon
subclass of: SO_0000010

position:32391:1
position: 32391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32609:1
position: 32609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32391-32609:1:exon

LDZ21_RS30970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS30970
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015913624.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTRNNAPQAPTNSYATDGKCHNAEPGTYGHECGKPAAWIGTNHKGFSSGFCDDCKRHGYEARDVIAWRRADT
SIO_010081: LDZ21_RS30970
subclass of: SO_0000673
so part of: LDZ21_RS30970
location: 32391..32609
location: region:32391-32609:1
so has part: feature:32391-32609:1:exon

WP_012478187.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32391-32609:1:exon

LDZ21_RS30975
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS30975
so part of: sequence
location: 32621..33829
location: region:32621-33829:1
so has part: feature:32621-33829:1:exon
subclass of: SO_0000010

position:32621:1
position: 32621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33829:1
position: 33829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32621-33829:1:exon

LDZ21_RS30975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS30975
function: involved in stable inheritance
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011114068.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAKKRKTPAQPGQDWNAPAAELLAELPTDRDELLAAAVAAVVEIDAAIMRGDGAAAEAASDRYEAVIWKMNGGTHVGSMADHDAPGQVIERHCAAVPGDVPLWGQRGQFLVADGDMRALVEYEAGYGGPLGAHFQFHVIDLDRPFISETGYRSHFDTAQGCMTVDEVARGILAAQRAEKKRPVMVEASYRDRLADAPLPAWLAGLEPPARRAPATVLVPPGFVLVDVVLPSHRAFIARRWAAEAATRIKAARAAGLDAKGKITGAGPERDPASPETTMTCSIVKADDAEPGEGGPVSPETTMPRASAATCSIARNGDGGPADLVEFKPGQRCEIVSVHHPVFDRYIGKRIIIVKVHPDTRQVWAHDDRPVTYKTNRAGRRVVDSDPSCIQSIYGFDQLRLIT
SIO_010081: LDZ21_RS30975
subclass of: SO_0000673
so part of: LDZ21_RS30975
location: 32621..33829
location: region:32621-33829:1
so has part: feature:32621-33829:1:exon

WP_011114068.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32621-33829:1:exon

LDZ21_RS30980
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
gene: korC
locus tag: LDZ21_RS30980
so part of: sequence
location: 33846..34103
location: region:33846-34103:1
so has part: feature:33846-34103:1:exon
subclass of: SO_0000010

position:33846:1
position: 33846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34103:1
position: 34103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33846-34103:1:exon

LDZ21_RS30980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
gene: korC
locus tag: LDZ21_RS30980
function: DNA binding protein involved in transcriptional regulation
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012478185.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transcriptional repressor KorC
translation: MTNDANIRLECLKPAERWAQPTGEEVREVLRLAGFSGSKAAKALGLGAKGDRTIRRWIGEDTPIPYAAWAILCDQAGLGVIWKED
SIO_010081: LDZ21_RS30980
subclass of: SO_0000673
so part of: LDZ21_RS30980
location: 33846..34103
location: region:33846-34103:1
so has part: feature:33846-34103:1:exon

WP_011114067.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33846-34103:1:exon

LDZ21_RS30985
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
gene: kleA
locus tag: LDZ21_RS30985
so part of: sequence
location: 34261..34497
location: region:34261-34497:1
so has part: feature:34261-34497:1:exon
subclass of: SO_0000010

position:34261:1
position: 34261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34497:1
position: 34497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34261-34497:1:exon

LDZ21_RS30985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
gene: kleA
locus tag: LDZ21_RS30985
function: involved in stable inheritance
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015913627.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: stable inheritance protein KleA
translation: MSDNKIMPWIDELEGAAATDFPARRDEIAAMMAEAAELVCKAEELRGKAYFAGCSLEGQAKGHWSMEAVEQAKRRAGW
SIO_010081: LDZ21_RS30985
subclass of: SO_0000673
so part of: LDZ21_RS30985
location: 34261..34497
location: region:34261-34497:1
so has part: feature:34261-34497:1:exon

WP_011114066.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34261-34497:1:exon

LDZ21_RS30990
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
gene: kleE
locus tag: LDZ21_RS30990
so part of: sequence
location: 34706..35032
location: region:34706-35032:1
so has part: feature:34706-35032:1:exon
subclass of: SO_0000010

position:34706:1
position: 34706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35032:1
position: 35032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34706-35032:1:exon

LDZ21_RS30990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
gene: kleE
locus tag: LDZ21_RS30990
function: involved in stable inheritance
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012478184.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: KleE stable inheritance protein
translation: MSNIIKFPKEIEQPAAPAPVEPAAASAAPNKAPGAGLLAGLVKFVWVATVLVWPILKWVLSIATFFQFVRMLYHWNTPGVYAGWSFLAYFAVLTAITYFVSIYKPKGL
SIO_010081: LDZ21_RS30990
subclass of: SO_0000673
so part of: LDZ21_RS30990
location: 34706..35032
location: region:34706-35032:1
so has part: feature:34706-35032:1:exon

WP_011114065.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34706-35032:1:exon

LDZ21_RS30995
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS30995
so part of: sequence
location: 35034..35363
location: region:35034-35363:1
so has part: feature:35034-35363:1:exon
subclass of: SO_0000010

position:35034:1
position: 35034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35363:1
position: 35363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35034-35363:1:exon

LDZ21_RS30995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS30995
function: involved in stable inheritance
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011798723.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2761 domain-containing protein
translation: MKKQTLPYPPGFVEPNTGRVAVLVREYAASDLNGDAPAYWYSAQSEEWGLDPWRLVEGVDPHTAGGQFDVCFANGSSRTVGPLMTFFMSAADAARLNAKKEDHAPIFSR
SIO_010081: LDZ21_RS30995
subclass of: SO_0000673
so part of: LDZ21_RS30995
location: 35034..35363
location: region:35034-35363:1
so has part: feature:35034-35363:1:exon

WP_011114064.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:35034-35363:1:exon

LDZ21_RS31000
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS31000
so part of: sequence
location: 35470..35778
location: region:35470-35778:1
so has part: feature:35470-35778:1:exon
subclass of: SO_0000010

position:35470:1
position: 35470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35778:1
position: 35778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35470-35778:1:exon

LDZ21_RS31000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS31000
function: DNA binding protein involved in transcriptional regulation
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010890110.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transcriptional regulator KorA
translation: MKKRLTEAQFQAAIKGLEIGQQTIDIARGVLVDGRPQAEFVASLGLTKGAVSQAVSRVWAVAGEVLPQGFERVTAVLPEHQAFIVKRWEADAKGKRKQEPNS
SIO_010081: LDZ21_RS31000
subclass of: SO_0000673
so part of: LDZ21_RS31000
location: 35470..35778
location: region:35470-35778:1
so has part: feature:35470-35778:1:exon

WP_011114062.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:35470-35778:1:exon

LDZ21_RS31005
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS31005
so part of: sequence
location: 35775..36539
location: region:35775-36539:1
so has part: feature:35775-36539:1:exon
subclass of: SO_0000010

position:35775:1
position: 35775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36539:1
position: 36539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35775-36539:1:exon

LDZ21_RS31005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS31005
function: involved in plasmid partition
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011114061.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MKTLVTAIQKGGQGKTFATCHLAFDFQERGLRVAVIDLDTQGNASWTLAGHDSGYPASRMFTAGGDELRAWFADREDDGLALIAADANLANLDKMELSQAAAALRASVAALGEFFDVCLIDTAPSLGVAMTAAVLTADYMLSPIEMEAYSLQGMKKMVAVISNLRKQNPKLRFLGMVPNKVDARKPRHVNNLATLQQAYPQLILPFSIGARDSIAEALGEQMPVWKIKKTAARKATQEVRALADYVFTKMEIAQ
SIO_010081: LDZ21_RS31005
subclass of: SO_0000673
so part of: LDZ21_RS31005
location: 35775..36539
location: region:35775-36539:1
so has part: feature:35775-36539:1:exon

WP_011114061.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:35775-36539:1:exon

LDZ21_RS31010
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS31010
so part of: sequence
location: 36536..37585
location: region:36536-37585:1
so has part: feature:36536-37585:1:exon
subclass of: SO_0000010

position:36536:1
position: 36536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37585:1
position: 37585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36536-37585:1:exon

LDZ21_RS31010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS31010
function: DNA binding protein involved in transcriptional regulation
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010890108.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParB/RepB/Spo0J family partition protein
translation: MSAKTNAKKKEQDKPQSSGLGLDGLGDLAGLLNEQPAANAGGAGPQELPLDLIDEDPHQPRTADNPGFSPESIAEIGETIKARGVKSPISVRENPDAPGRYLINHGARRYRGSKWAHKTTIPAFIDNDYNEADQVIENLQRNELTAREIADFIGRELAKGKKKGEIAKEIGKSPAFVTQHVTLLDLPEPIAEAFNSGRGKDVTVINELVTAYKKNPDEVAAWLADDSQELTRGSVKLLREFLEDKRSHEDGDRDPNTVDALTGKTDAEAGDGEQGPQDDDAKGKKEPKEADPDKLKKAIIQVKHDDRPARLILNRRPPAEGWAWLKYEDDGQEFEADLGTVQLVALLEG
SIO_010081: LDZ21_RS31010
subclass of: SO_0000673
so part of: LDZ21_RS31010
location: 36536..37585
location: region:36536-37585:1
so has part: feature:36536-37585:1:exon

WP_011114060.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:36536-37585:1:exon

LDZ21_RS31015
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS31015
so part of: sequence
location: 37764..38795
location: region:37764-38795:1
so has part: feature:37764-38795:1:exon
subclass of: SO_0000010

position:37764:1
position: 37764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38795:1
position: 38795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:37764-38795:1:exon

LDZ21_RS31015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS31015
function: DNA binding protein involved in transcriptional regulation
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011342948.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA-binding protein
translation: MAISKEQIFAVADELDAAGQNPTLANVRKQLGSGSFTTISEAMNEWRARKASQAAPIREPAPQAITDKLAELGGDLWAVALEMANNRLAAEREALEAVRQETEAARQEAAELADQLTGELDEAKARIAALEAVEAAAKGEADELRGKLAATSERAATAEARAGELRTELDHAHQEARQARAERDKAQERATASADQVEALRADLAAANSRTAEIERRAGELRADLERANQATDQARAAQAEQRKATEAAAAERDQVRAELVKVQAKAEAAEQAHQEQRKAMAAEAHRQAERLTAAQGERDQAKRDAAQAREEAAGLRGRLEALETVMAQGRAADPTSGGRKKT
SIO_010081: LDZ21_RS31015
subclass of: SO_0000673
so part of: LDZ21_RS31015
location: 37764..38795
location: region:37764-38795:1
so has part: feature:37764-38795:1:exon

WP_011114059.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:37764-38795:1:exon

LDZ21_RS31020
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS31020
so part of: sequence
location: 38966..39313
location: region:38966-39313:1
so has part: feature:38966-39313:1:exon
subclass of: SO_0000010

position:38966:1
position: 38966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39313:1
position: 39313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38966-39313:1:exon

LDZ21_RS31020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS31020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000664557.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKERLLVMNGQRIVQAEKDGAWTNQKVDKAGALKPGIYNLYTAQAADKKQTHAGVIVHADATNVYQQIGKNFVMHARSDFDKVPEIGSAKSISYNAQGKAAVAAEAPKLTRGRSM
SIO_010081: LDZ21_RS31020
subclass of: SO_0000673
so part of: LDZ21_RS31020
location: 38966..39313
location: region:38966-39313:1
so has part: feature:38966-39313:1:exon

WP_000664557.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:38966-39313:1:exon

LDZ21_RS31025
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS31025
so part of: sequence
location: 39342..39995
location: region:39342-39995:1
so has part: feature:39342-39995:1:exon
subclass of: SO_0000010

position:39342:1
position: 39342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39995:1
position: 39995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39342-39995:1:exon

LDZ21_RS31025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS31025
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000826922.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKRLTIPGSGTESRATKPARVSAPATLGGAAFGASREDTGADLLEAAQAAEIEQQATLEAAPVEQSYPETLALYVQAKHDQVEHIEDRLENLIDRQQARLQQTQASAPGRLSLPGSKRAWQNQQAQQQARLQTLHARLEAVREIKEGMGLHSPKIEELATRKMRAENPELASDWDAMREAARRHELLMRKQEQERKQSQAQERPGRSQSLGLSARPA
SIO_010081: LDZ21_RS31025
subclass of: SO_0000673
so part of: LDZ21_RS31025
location: 39342..39995
location: region:39342-39995:1
so has part: feature:39342-39995:1:exon

WP_000826922.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:39342-39995:1:exon

LDZ21_RS31030
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS31030
so part of: sequence
location: complement(40198..40638)
location: region:40198-40638:-1
so has part: feature:40198-40638:-1:exon
subclass of: SO_0000010

position:40198:-1
position: 40198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:40638:-1
position: 40638
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40198-40638:-1:exon

LDZ21_RS31030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS31030
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000718516.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraM
translation: MAADDKIEELIREIAAKHGIAVGRDDPILILQTINMKLMQDSASAQQEILDAFKSELESIAHRWGDDAKGKAERTLNAALAASKDAMTRGMQEGAKAAAEAVRREVEAVTAQLVAPIREARRVAMMNMVAAGMAVVAAGLALWASL
SIO_010081: LDZ21_RS31030
subclass of: SO_0000673
so part of: LDZ21_RS31030
location: complement(40198..40638)
location: region:40198-40638:-1
so has part: feature:40198-40638:-1:exon

WP_000718516.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:40198-40638:-1:exon

LDZ21_RS31035
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS31035
so part of: sequence
location: complement(40638..41363)
location: region:40638-41363:-1
so has part: feature:40638-41363:-1:exon
subclass of: SO_0000010

position:41363:-1
position: 41363
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40638-41363:-1:exon

LDZ21_RS31035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS31035
function: involved in conjugative DNA transfer
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011304098.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MAKIHMVLQGKGGVGKSMIAATIAQYKAGKGQKPLCIDTDPVNATFEGYKALNVRRLNIMDGDEINTRNFDALVEMIASAEGDVIIDNGASSFVPLSHYLISNQVPALLQDMGHELVVHTVVTGGQALVDTVSGFAQLASQFPAECLFVVWLNPYWGPIEHEGKGFEQLKAYTTNKGRVSAIIQIPALKEETYGRDFAEMLQDRRTFDEALADSALTIMTRQRLKIVKTQLFAQLENAAVL
SIO_010081: LDZ21_RS31035
subclass of: SO_0000673
so part of: LDZ21_RS31035
location: complement(40638..41363)
location: region:40638-41363:-1
so has part: feature:40638-41363:-1:exon

WP_011114058.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:40638-41363:-1:exon

LDZ21_RS31040
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS31040
so part of: sequence
location: complement(41363..41761)
location: region:41363-41761:-1
so has part: feature:41363-41761:-1:exon
subclass of: SO_0000010

position:41761:-1
position: 41761
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41363-41761:-1:exon

LDZ21_RS31040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS31040
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001127128.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TraK family protein
translation: MPKTYPEELAEWVKGREAKKPRQDKHVVAFLAVKSDVQAALDAGYAMKTIWEHMKETGRLRCRYETFTQHVKRYIKAAPVASPPPPATPPDSQPKGAKPEPKAAPPASESKSEPPKIGGFTFDATPKKEDLL
SIO_010081: LDZ21_RS31040
subclass of: SO_0000673
so part of: LDZ21_RS31040
location: complement(41363..41761)
location: region:41363-41761:-1
so has part: feature:41363-41761:-1:exon

WP_001127128.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:41363-41761:-1:exon

LDZ21_RS31045
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
gene: traJ
locus tag: LDZ21_RS31045
so part of: sequence
location: 42135..42509
location: region:42135-42509:1
so has part: feature:42135-42509:1:exon
subclass of: SO_0000010

position:42135:1
position: 42135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42509:1
position: 42509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42135-42509:1:exon

LDZ21_RS31045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
gene: traJ
locus tag: LDZ21_RS31045
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000426567.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer transcriptional regulator TraJ
translation: MENDEKEHGRRRRQHLRVPVFPEEKDEIEANAKRAGVSVARYLRDVGQGYQIKGVMDYQHVRELVRVNGDLGRLGGLLKLWLTDDVRTLQFGEATILALLGRIEATQDEMSRIMKAVVQPRAEP
SIO_010081: LDZ21_RS31045
subclass of: SO_0000673
so part of: LDZ21_RS31045
location: 42135..42509
location: region:42135-42509:1
so has part: feature:42135-42509:1:exon

WP_000426567.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:42135-42509:1:exon

LDZ21_RS31050
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS31050
so part of: sequence
location: 42544..44784
location: region:42544-44784:1
so has part: feature:42544-44784:1:exon
subclass of: SO_0000010

position:42544:1
position: 42544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44784:1
position: 44784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42544-44784:1:exon

LDZ21_RS31050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS31050
function: involved in conjugative DNA transfer
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011137971.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TraI/MobA(P) family conjugative relaxase
translation: MIAKHVPMRSLGKSDFAGLANYITDAQSKDHRLGHVQATNCEAGSIQDAITEVLATQHTNTRAKGDKTYHLIVSFRAGEQPSADTLRAIEERICVGLGYGEHQRISAVHNDTDNLHIHIAINKIHPTRHTMHEPYYPHRALAELCTALERDYGLERDNHEPRKRGAEGRAADMERHAGVESLVGWIKRECLDEIKGAQSWQELHQVMRDNGMELRVRANGLVFEAGDGTMVKASTVARDLSKPSLEARLGPFEASPERQAQTTAKRQYRKDPIRLRVNTVELYAKYKAEQQSLTTARAQALERARHRKDRLIEAAKRSNRLRRATIKVVGEGRANKKLLYAQASKALRSELQAINKQFQQERTALYAEHSRRTWADWLKKEAQHGGADALAALRAREAAQGLKGNTIRGEGQAKPGHAPAVDNITKKGTIIFRAGMSAVRDDGDRLQVSREATREGLQEALRLAMQRYGNRITVNGTVEFKAQMIRAAVDSQLPITFTDPALESRRQALLNKENTHERTERPEHRGRTGRGAGGPGQRPAADQHATGAAAVARAGDGRPAAGRGDRADAGLHAATVHRKPDVGRLGRKPPPQSQHRLRALSELGVVRIAGGSEVLLPRDVPRHVEQQGTQPDHALRRGISRPGTGVGQTPPGVAAADKYIAEREAKRLKGFDIPKHSRYTAGDGALTFQGTRTIEGQALALLKRGDEVMVMPIDQATARRLTRIAVGDAVSITAKGSIKTSKGRSR
SIO_010081: LDZ21_RS31050
subclass of: SO_0000673
so part of: LDZ21_RS31050
location: 42544..44784
location: region:42544-44784:1
so has part: feature:42544-44784:1:exon

WP_011114057.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:42544-44784:1:exon

LDZ21_RS31055
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS31055
so part of: sequence
location: 44781..46694
location: region:44781-46694:1
so has part: feature:44781-46694:1:exon
subclass of: SO_0000010

position:44781:1
position: 44781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46694:1
position: 46694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44781-46694:1:exon

LDZ21_RS31055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS31055
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011655356.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretory system conjugative DNA transfer family protein
translation: MKIKMNNAVGPQVRTAKPKPSKLLPVLGAASMVGGLQAATQFFAHTFAYHATLGPNVGHVYAPWSILHWTYKWYSQYPDEIMKAGSMGMLVSTVGLLGVAVAKVVTSNSSKANEYLHGSARWAEKKDIQAAGLLPRERNVLEIVTGKAAPTATGVYVGGWQDKDGNFFYLRHSGPEHVLTYAPTRSGKGVGLVVPTLLSWGASSVITDLKGELWALTAGWRQKHAKNKVLRFEPASTSGGVCWNPLDEIRLGTEYEVGDVQNLATLIVDPDGKGLDSHWQKTAFALLVGVILHALYKAKDDGGTATLPSVDAMLADPNRDIGELWMEMATYGHVDGQNHHAIGSAARDMMDRPEEEAGSVLSTAKSYLALYRDPVVARNVSRSDFRIKQLMHEDDPVSLYIVTQPNDKARLRPLVRVMVNMIVRLLADKMDFEGGRPVAHYKHRLLMMLDEFPSLGKLEIMQESLAFVAGYGIKCYLICQDINQLKSRETGYGHDESITSNCHVQNAYPPNRVETAEHLSRLTGQTTVVKEQITTSGRRTAAMLGQVSRTYQEVQRPLLTPDECLRMPGPKKNAQGEIEEAGDMVIYVAGYPAIYGKQPLYFKDPVFSARAAIPAPKVSDRLRAVAQAETEGEGITI
SIO_010081: LDZ21_RS31055
subclass of: SO_0000673
so part of: LDZ21_RS31055
location: 44781..46694
location: region:44781-46694:1
so has part: feature:44781-46694:1:exon

WP_000694765.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:44781-46694:1:exon

LDZ21_RS31060
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
gene: traF
locus tag: LDZ21_RS31060
so part of: sequence
location: 46691..47227
location: region:46691-47227:1
so has part: feature:46691-47227:1:exon
subclass of: SO_0000010

position:46691:1
position: 46691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47227:1
position: 47227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:46691-47227:1:exon

LDZ21_RS31060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
gene: traF
locus tag: LDZ21_RS31060
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000086826.1
GO component: GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO function: GO:0008233 - peptidase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugative transfer signal peptidase TraF
translation: MSRILKRIAAGVVIAGVAALLLAAGGYAAGARVNTTKSIPVGLYWTSSAPVEKGAYVLFCPPQLGVFDDAKERGYIGAGFCQGGYGYMMKRVLAAKDDAVAVADDGVRVNGELLPLSAPIKADKAGRPLPRYQSNSYTLGNSEVLLMSDVSATSFDGRYFGPINRSQIKTVIRPVITW
SIO_010081: LDZ21_RS31060
subclass of: SO_0000673
so part of: LDZ21_RS31060
location: 46691..47227
location: region:46691-47227:1
so has part: feature:46691-47227:1:exon

WP_006122512.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:46691-47227:1:exon

LDZ21_RS31065
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS31065
so part of: sequence
location: 47239..49302
location: region:47239-49302:1
so has part: feature:47239-49302:1:exon
subclass of: SO_0000010

position:47239:1
position: 47239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49302:1
position: 49302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:47239-49302:1:exon

LDZ21_RS31065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS31065
EC number: 5.6.2.1
function: involved in conjugative DNA transfer
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011114056.1
GO function: GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]; GO:0098847 - sequence-specific single stranded DNA binding [Evidence IEA]
GO process: GO:0051304 - chromosome separation [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]; GO:0006261 - DNA-templated DNA replication [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA topoisomerase III
translation: MRLFIAEKPSVAKAIAGELGATGKGDGFIECGTDKVTWCFGHMLEQADPDEYTPDDVPRGQSGKKVWRVDELPIIPESWILKPKDDAKKQLAVIGKLLKEAKEIVNAGDPDREGQLLVDEVLEHFRNSKPVRRFWVSAQDSVSVKRGLAALKENTTYAGWADAARGRQRADWLIGMNLSRAYTLRAQRGGSRALLTVGRVQTPTLALVVARDREIEAFKAVPYHTIRAVVQHAGGSFAAAWKAKEDQAGLDSEGRLVDTAVADALVAAVKGQPGTIAAYKQEAKKQNQPLAFALSDITALASAKFGYSAEDVLNTCQALYETHKLTSYPRTDCAYLPESQHADAPRVLEAIKHVNPELAGLVDGADPRIKSKTWDDSKITAHHGIVPTMQKGSKAALSERERNIYDLIVRAYLAQFYPLHEYMQTTVGVEIAGENFAASGKVVTRNGWRDVYSQADEEGEKDEDDDSGTQALPSMAQGDAVTCTDATRKDAKTKPPARFTEGTLIRAMENIHKFVSDAEHKKMLREGDGIGTSATRASIISELKRREFLAVKGKQIISTTLGRSVIDALPEVVKSPVLTALYERMLKGVEQGTAALDAFITKQETFIRDQVAKANSGAVTIAGGKEAAPVSSLHKCMACGSGLSRRPSKKKGQFWWGCSNFPTCKQTYPDLKGRPDYSKGRNGPASE
SIO_010081: LDZ21_RS31065
subclass of: SO_0000673
so part of: LDZ21_RS31065
location: 47239..49302
location: region:47239-49302:1
so has part: feature:47239-49302:1:exon

WP_011114056.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:47239-49302:1:exon

LDZ21_RS31070
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS31070
so part of: sequence
location: 49324..49713
location: region:49324-49713:1
so has part: feature:49324-49713:1:exon
subclass of: SO_0000010

position:49324:1
position: 49324
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49713:1
position: 49713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49324-49713:1:exon

LDZ21_RS31070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS31070
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006122510.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: protein TraD
translation: MNEQTTTNTAAHDEPLAVLPPVDDDAAGREAVREKMADALTPGFQVEFDPDEAERVGAFVEDALSEQDAAASGDDLVEVDGALEPAFLDDEGPSADIPPFITTTNARELYDLRPGETVAQAAARKASEG
SIO_010081: LDZ21_RS31070
subclass of: SO_0000673
so part of: LDZ21_RS31070
location: 49324..49713
location: region:49324-49713:1
so has part: feature:49324-49713:1:exon

WP_006122510.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:49324-49713:1:exon

LDZ21_RS31075
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS31075
so part of: sequence
location: 49717..54063
location: region:49717-54063:1
so has part: feature:49717-54063:1:exon
subclass of: SO_0000010

position:49717:1
position: 49717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:54063:1
position: 54063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49717-54063:1:exon

LDZ21_RS31075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS31075
function: involved in conjugative DNA transfer
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006122509.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: zincin-like metallopeptidase domain-containing protein
translation: MPITKAEAQGVTRAFVRDYPGALELAYKFREDAAELYGPRAAEVPADMKGGYVPKETLHAGRAYRGRVDVPLQNVESAGDLLMTLRHEVLGHYGANTFAPGEKRALLDGLAAARNEPTLKPLWDDVNRRYAGQSLDVRAEEVFALHCEGIEPSQHQVADQVQQRGQQSFTETCIARVRPMQADDLHNIVCMVAQGLRDRSRTQQNFPQFNELFRRDENMEPKKPFHEVVAEKLIEQLKAGTAPWQKPWEPGEPNAYLPMNPTTGKRYKGINAIHLMAQGRSDARWMTYKQAAAVGAQVRKGEKGTPVQYWKFSEEQDKLDDSGRPVLDAKGQPVKETVMLERPRVFFATVFNGEQIDGLPPLQPKKEQTWNAVERAEHILKASGATITHAAGDRAFYRPSTDSITLPERGQFPSSDRYYATALHELGHWTGHASRLDRDLAHPFGSEGYAKEELRAEIASMIVGDELGIGHDPGQHAAYVGSWIKALQDEPLEVFRAAADAEKIHDYVLAFEQKQVQEQDQQQSQAQDEAVAQALAVDIAEVLDNPDVSFSHYQAFQGDTLEDALRSRGLETVGSITGTDPEQFYAVAHDRLSPVFGIDPSHTDTDNAYLERKGLAQEFANMAEQLHLAQQLQQHGEQIVSSIDAEARWSDGQRIFAFHDQDGEPHQVRSLDELNNYAPDQLMALPALTQQQAAVADQEANMTPPTNDQAAALLAAHPADAVQGIEQAAAARRQLAAGEIDGQAFADATRQHLGVELPPDWSGELRIVGVAEQDGQTVDAAQAGIEPQAFQVYARKADAQFGEDAFAFVAGTRTEGQAEALTERLHLVDALGTDNQHERAAKLARVQEERVRRDPNATEEDISAAKEARKTAEASAMLNDSDAQRRAAELERQERERQQAQPQAEKPERQYINVPYKEKDEAKSLGARWDRQQQSWYVPPGTDAAPFAKWAQGAATAAVEPRSAQPAPEAQGEAQKPAQQAQQARQYLAVPYEQRNAAKAAGALWDKAAKSWYVGPRADAAKLERWKPENVQAQQGPAMTPREEFAEAMRSAGLFTGSNAQGDHPIMDGKRHRVPVEGGKKGALDGFYVGHLDGHPAGRIINNKTGTDITWKSKGYALSDQEKAKLQAEAAEKLAQRAVEQDKAQEATAQRVGRQMADLVPIEQPTPYLQAKGIQAQAGVMTDREGQKTYIPAFDAEGKQWTMQYIQEDGTKRFAKDSKKEGCFHPVGGMDALAAAPALVISEGYATAAQVAEAVGHATVAAFDSGNLEAVAKALHAKFPDKPIIIAGDDDRHLVMTHGNNPGREKAEAAAQAVGGKAIFPIFAPAENTYPRDLPAITPDSFKTHLRAEQRLADAAAGKVELAGDEAAKLKASMLSGAQIAALSTMKQHTDFNDLAHKSELGIEGVKRQIGAAISQVQRDEQQHQEQKHVEKKQQQIEQRPRRAARIG
SIO_010081: LDZ21_RS31075
subclass of: SO_0000673
so part of: LDZ21_RS31075
location: 49717..54063
location: region:49717-54063:1
so has part: feature:49717-54063:1:exon

WP_011114055.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:49717-54063:1:exon

LDZ21_RS31080
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS31080
so part of: sequence
location: 54552..55403
location: region:54552-55403:1
so has part: feature:54552-55403:1:exon
subclass of: SO_0000010

position:54552:1
position: 54552
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:55403:1
position: 55403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:54552-55403:1:exon

LDZ21_RS31080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS31080
inference: COORDINATES: protein motif:HMM:NF012464.2
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MTSRNGYFPGKTKAKRSAIITPRTAQETQIAAMPRQSRAARQALAKTPPLRVGGDGLVEGADRIMRTPTEHQAAGVAFKVARIYLRVSTDEQDLTRQAAIVESTRAAGFYVAGIYREKASGARADRAELLRMIGDLQPGEVVVAEKIDRISRLPLPEAERLVASIRAQGARLAVPGVVDLSDLAAEAKGVAKVVLESIQDMLLKLALQMARDDYEDRRERQRQGVELAKDAGRYTGRKANTKVHERIVALRSAGHSIPETARLAGCSESQVKRVWALHNQAQA
SIO_010081: LDZ21_RS31080
subclass of: SO_0000673
so part of: LDZ21_RS31080
location: 54552..55403
location: region:54552-55403:1
so has part: feature:54552-55403:1:exon

WP_011296189.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:54552-55403:1:exon

LDZ21_RS31085
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS31085
so part of: sequence
location: complement(55405..56079)
location: region:55405-56079:-1
so has part: feature:55405-56079:-1:exon
subclass of: SO_0000010

position:55405:-1
position: 55405
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:56079:-1
position: 56079
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:55405-56079:-1:exon

LDZ21_RS31085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS31085
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011178411.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA methylase
translation: MRYPGGKGGAGVYQTIINNIPPHDTYIETHLGGGNILERKRPAARSVGIDVDPEVIEVWQQLDVPGLELHHGDAVAWLESHQFTGSEFVYADPPYVMDSRRGGKLYRHEYDDADHVRLLDVLAGLPCAVMVSGYSSTIYDSSPLASWRTIDFNAMTRGGIAIERLWMNYPEPAELHDLRYLGSNFRERERIKRKKARWQAKLAKLDPLERAAIMECLRELEAAE
SIO_010081: LDZ21_RS31085
subclass of: SO_0000673
so part of: LDZ21_RS31085
location: complement(55405..56079)
location: region:55405-56079:-1
so has part: feature:55405-56079:-1:exon

WP_011178411.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:55405-56079:-1:exon

LDZ21_RS31090
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS31090
so part of: sequence
location: complement(56234..56665)
location: region:56234-56665:-1
so has part: feature:56234-56665:-1:exon
subclass of: SO_0000010

position:56234:-1
position: 56234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:56665:-1
position: 56665
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:56234-56665:-1:exon

LDZ21_RS31090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS31090
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001665065.1
GO function: GO:0042834 - peptidoglycan binding [Evidence IEA]; GO:0015288 - porin activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: OmpA family protein
translation: MRKPVLLALSLAFLVSAQSALAAGDAGNFGTPIKSGVSVSFPDSSATFQPTPEALELLADARNAAIIYISGRTSTLRPSAADEALALRRALSARSYLVARGVSPLKIMVNFASAADFVADNSTAEGRRENQRVDIEVVYIPTY
SIO_010081: LDZ21_RS31090
subclass of: SO_0000673
so part of: LDZ21_RS31090
location: complement(56234..56665)
location: region:56234-56665:-1
so has part: feature:56234-56665:-1:exon

WP_001665065.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:56234-56665:-1:exon

LDZ21_RS31095
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS31095
so part of: sequence
location: complement(56681..57379)
location: region:56681-57379:-1
so has part: feature:56681-57379:-1:exon
subclass of: SO_0000010

position:56681:-1
position: 56681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:57379:-1
position: 57379
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:56681-57379:-1:exon

LDZ21_RS31095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS31095
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011798696.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TraX family protein
translation: MKALRIPDGTVEALKWLALVLMTGDHVNKYLFNATLPVLFEAGRVALPLFVFVLAYNLARPGTLERGVYGRTMSRLAMFGALASVPFVALGGLYAGWWPLNVMFTLLVVTATAYLVERGGKLHLAAAGVVFLVGGSSVEYWWPAVAFGLAVWSYTRRPSWAAAAVAVLACAALWFVNRNLWALAALPVLFLASRVDVRVPRLRWAFYAYYPLHLASLWLIRIPMSKAGYLFF
SIO_010081: LDZ21_RS31095
subclass of: SO_0000673
so part of: LDZ21_RS31095
location: complement(56681..57379)
location: region:56681-57379:-1
so has part: feature:56681-57379:-1:exon

WP_011114053.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:56681-57379:-1:exon

LDZ21_RS31100
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS31100
so part of: sequence
location: complement(57379..57645)
location: region:57379-57645:-1
so has part: feature:57379-57645:-1:exon
subclass of: SO_0000010

position:57645:-1
position: 57645
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:57379-57645:-1:exon

LDZ21_RS31100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS31100
function: unknown
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011798697.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDKFHAFMMRYTLGVGRLLQAYCKWAEGQAKNQLDLLLLGLGPIFALGLLLWALPAWIGKPIAFVLSLPALYIIFLVLRAYAIRGGRR
SIO_010081: LDZ21_RS31100
subclass of: SO_0000673
so part of: LDZ21_RS31100
location: complement(57379..57645)
location: region:57379-57645:-1
so has part: feature:57379-57645:-1:exon

WP_010890140.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:57379-57645:-1:exon

LDZ21_RS31105
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS31105
so part of: sequence
location: complement(57674..58309)
location: region:57674-58309:-1
so has part: feature:57674-58309:-1:exon
subclass of: SO_0000010

position:57674:-1
position: 57674
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:58309:-1
position: 58309
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:57674-58309:-1:exon

LDZ21_RS31105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS31105
function: involved in mating pair formation
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011798698.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transglycosylase SLT domain-containing protein
translation: MPFFADLPPQLQERVVCSISAAVKYEVPVNIVLAVAEKEGGKPGQWVRNSNGTHDVGPMQFNTAYLGDLARYGITANDVAAAGCYSFDLAAWRLRMHIRNDKGDLWTKAANYHSRTPQYNAVYRADLMRKASKWADWLEARFVTLDVTKAGATPSTPSQPATVAQRATPAARPAPAPQQAAPAAAAARSVSVAGYVPRTVSFNTSREGSAE
SIO_010081: LDZ21_RS31105
subclass of: SO_0000673
so part of: LDZ21_RS31105
location: complement(57674..58309)
location: region:57674-58309:-1
so has part: feature:57674-58309:-1:exon

WP_011114052.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:57674-58309:-1:exon

LDZ21_RS31110
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS31110
so part of: sequence
location: complement(58323..58910)
location: region:58323-58910:-1
so has part: feature:58323-58910:-1:exon
subclass of: SO_0000010

position:58323:-1
position: 58323
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:58910:-1
position: 58910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:58323-58910:-1:exon

LDZ21_RS31110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS31110
function: probable role in the formation of the mating lock (cell-cell contact between donor and recipient) during conjugation on the basis that TrbM shows homology to Haemophilus influenzae adhesin and has an export signal sequence
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010890138.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TrbM/KikA/MpfK family conjugal transfer protein
translation: MKKKLFALAALVAALGSTAGTASAQDVLTGDTRLACEAILCLSSGTRPSECTPSLSRYFNITKRKLSDTIRARLNFLQLCPVASQTPEMQSLVSAISRGAGRCDAQSLNSTLVMWTGGYDDGRTYISNQLPDYCGAYTGHAYTDFASSGTLPRYVGTPERGGYWVEARDYDRALAEYNERIRREDEERRRQSWLN
SIO_010081: LDZ21_RS31110
subclass of: SO_0000673
so part of: LDZ21_RS31110
location: complement(58323..58910)
location: region:58323-58910:-1
so has part: feature:58323-58910:-1:exon

WP_010890138.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:58323-58910:-1:exon

LDZ21_RS31115
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
gene: trbL
locus tag: LDZ21_RS31115
so part of: sequence
location: complement(58928..60646)
location: region:58928-60646:-1
so has part: feature:58928-60646:-1:exon
subclass of: SO_0000010

position:58928:-1
position: 58928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:60646:-1
position: 60646
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:58928-60646:-1:exon

LDZ21_RS31115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
gene: trbL
locus tag: LDZ21_RS31115
function: involved in mating pair formation
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011114051.1
GO process: GO:0009291 - unidirectional conjugation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type conjugative transfer protein TrbL
translation: MRMPANLKTLALPLFVWLAFFAVDAHAAIDNAGVFDSVLDRYQAAASGWAGVITTAATWLFWTLVVISMVWTFGMMALRKADIGEFFAEFVRFTIFTGFFWWALTNGPNFASSIYASLRQLAGNATGLGNALSPSGIVDVGFAIFDKVMDQSSVWSPVDSMAGILMAVAILVILALVGVNMLLLLASGWVLAYGGVFFLGFGGSRWTSDMAINYYKVVLGVAAQLFAMVLLVGIGKTFLDDYYSRMSAGISLKEMGVMLIVVIILLALVNKIPPLIAGIITGASVGGAGIGQFGAGAALGAAGMAAAAAATGGAALAAGAASAAGGASAVMAAFSKANENVSAGTDVMSAFSGGGSSGGGAGGGGDAGTGSTPFAQAAGFSGSSGGGSSSGGGSPSTGSSSGSSKGGDKGGGKADAGGQGSSSTASTGSSADKAAKNEPKPAGGAGQGQQAAPGSTGPGLLASAASALGTAGRIAADAGANLAKGTADVAKAKAASLREAAAERIADTTGGKIAAAIKAQGSGTAENIDVPDQQPAPSFGDNSLAGGPADADPESEVAAFANREQGRDGTTA
SIO_010081: LDZ21_RS31115
subclass of: SO_0000673
so part of: LDZ21_RS31115
location: complement(58928..60646)
location: region:58928-60646:-1
so has part: feature:58928-60646:-1:exon

WP_011114051.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:58928-60646:-1:exon

LDZ21_RS31120
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
gene: trbK
locus tag: LDZ21_RS31120
so part of: sequence
location: complement(60657..60884)
location: region:60657-60884:-1
so has part: feature:60657-60884:-1:exon
subclass of: SO_0000010

position:60657:-1
position: 60657
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:60884:-1
position: 60884
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:60657-60884:-1:exon

LDZ21_RS31120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
gene: trbK
locus tag: LDZ21_RS31120
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000644148.1
GO component: GO:0005886 - plasma membrane [Evidence IEA]
GO process: GO:0009292 - horizontal gene transfer [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: entry exclusion lipoprotein TrbK
translation: MKAIKALSLASAALVAALVAGCDNKPATAPMPEVNDENCKPENIAKIEDKGVQQAFSSLCLRRGGDFKPSPKREW
SIO_010081: LDZ21_RS31120
subclass of: SO_0000673
so part of: LDZ21_RS31120
location: complement(60657..60884)
location: region:60657-60884:-1
so has part: feature:60657-60884:-1:exon

WP_000644148.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:60657-60884:-1:exon

LDZ21_RS31125
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
gene: trbJ
locus tag: LDZ21_RS31125
so part of: sequence
location: complement(60894..61658)
location: region:60894-61658:-1
so has part: feature:60894-61658:-1:exon
subclass of: SO_0000010

position:60894:-1
position: 60894
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:61658:-1
position: 61658
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:60894-61658:-1:exon

LDZ21_RS31125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
gene: trbJ
locus tag: LDZ21_RS31125
function: mating pair formation and entry exclusion
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000802794.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type conjugative transfer protein TrbJ
translation: MKPKFLAAKLALVIAVSSTLAVTPVQAGIPVIDGTNLSQNIMTAIESVAQTLKQIEQYSTQLQQYQNQLQNTMAPAAYIWDQAQSTINGLMNAVNTLDYYKTQLGSLDSYIGKFQDVNYYKNSPCFTAAGCSDAERAALRNVAQLASESQKKANDALFKGLDRQQTNLTADAATLQRLQSAAQGAQGQMQAIGYANQLASQQANQLLQIRGLLIAQQNAMATKMQADADKEAQQAAAAAQLRQGSYRASPARTW
SIO_010081: LDZ21_RS31125
subclass of: SO_0000673
so part of: LDZ21_RS31125
location: complement(60894..61658)
location: region:60894-61658:-1
so has part: feature:60894-61658:-1:exon

WP_010890135.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:60894-61658:-1:exon

LDZ21_RS31130
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS31130
so part of: sequence
location: complement(61679..63100)
location: region:61679-63100:-1
so has part: feature:61679-63100:-1:exon
subclass of: SO_0000010

position:61679:-1
position: 61679
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:63100:-1
position: 63100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:61679-63100:-1:exon

LDZ21_RS31130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS31130
function: involved in mating pair formation
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011114050.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TrbI/VirB10 family protein
translation: MTENADQMAPDASPGEVSKKAGVRRVNNMPMYILGGVLLSFVLVMALVAADRAAKQNAPADGPKEKAGNTSMFAKEIAGDKTGGLIEPASPLKVPDMPTGPASAPLEIARPSNPDAPPAPPANPGNPGQPVNDDEAQRIRMAKMQMFGEAVKAKTTVRVDAPRSNGSAPGGPSTYTGTPQTRDEMLNRIAAVQQQIDAQRSNDPTAAYQARLAQIRGMGVGGGGAAPAAGGMGAGGAPQLLQTSTSGGGRNSMAQFGQGGQGDRWKLDSQPEAPRTPFELRAGFVVPATLISGINSDLPGQIMAQVAQDVYDTPTGKHLLIPQGSRLVGSYSSDVAYGQARVLVAWQRIVFPDGKAMDIGAMPGADSAGYAGFHDQVNNHYVRLFGSAFLMSGVTAGITYSQRQNQATNTYGAPSASSALSEALGQQLGQVTAQLIAKNLSISPTLEIRPGYRFNVVVTKDMTFSKPYRSFDY
SIO_010081: LDZ21_RS31130
subclass of: SO_0000673
so part of: LDZ21_RS31130
location: complement(61679..63100)
location: region:61679-63100:-1
so has part: feature:61679-63100:-1:exon

WP_011114050.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:61679-63100:-1:exon

LDZ21_RS31135
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
locus tag: LDZ21_RS31135
so part of: sequence
location: complement(63105..63593)
location: region:63105-63593:-1
so has part: feature:63105-63593:-1:exon
subclass of: SO_0000010

position:63105:-1
position: 63105
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:63593:-1
position: 63593
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:63105-63593:-1:exon

LDZ21_RS31135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
locus tag: LDZ21_RS31135
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011798704.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TrbH
translation: MRKIVSLALLALALGLGGCATTSQYGNFVQSAALDQQKLATDAVQQLATLYAPARTRLELQQPTPDPFGQALVKSLRDKGYALLEYAPAGASTQAPASAASQASAPATTAASGGLPLRYVLDQAGDSNLYRLTLMVGNQSITRPYLAQNGTFAPAGYWVRKE
SIO_010081: LDZ21_RS31135
subclass of: SO_0000673
so part of: LDZ21_RS31135
location: complement(63105..63593)
location: region:63105-63593:-1
so has part: feature:63105-63593:-1:exon

WP_006122479.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:63105-63593:-1:exon

LDZ21_RS31140
type: Gene
subclass of: SO_0000704
RO_0002162: 1071679
gene: trbG
locus tag: LDZ21_RS31140
so part of: sequence
location: complement(63596..64495)
location: region:63596-64495:-1
so has part: feature:63596-64495:-1:exon
subclass of: SO_0000010

position:63596:-1
position: 63596
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:64495:-1
position: 64495
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:63596-64495:-1:exon

LDZ21_RS31140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1071679
gene: trbG
locus tag: LDZ21_RS31140
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000753228.1
GO process: GO:0009291 - unidirectional conjugation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type conjugative transfer protein TrbG
translation: MKKTLSALIVGAAVAVPSLALAAPGDDIADKYFNKTNPTLTAQERAALAIAKRWEAGSATGIKPVAGSGGAIKFVYGAQQPSIVCAVLQVCDVALQPGEQVNSINLGDTARWTVEPAITGSGATEVQHLIIKPMDVGLETSLVVTTNRRSYHFRLRSHRTEYMPQVSFTYPEEAQAKWDAIQRREKQERTDNTLPATGEYLGDLSFDYELSGSASWKPVRVYNDGRKTIIEMPGTMQQTEAPTLLVVRKEGGLFTDDETVLVNYRVQGNRYIVDTVFDRAILIAGVGSSQDRVTISRRK
SIO_010081: LDZ21_RS31140
subclass of: SO_0000673
so part of: LDZ21_RS31140
location: complement(63596..64495)
location: region:63596-64495:-1
so has part: feature:63596-64495:-1:exon

WP_006122480.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:63596-64495:-1:exon