Caballeronia grimmiae strain Lep1A1 plasmid p3, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Caballeronia.
Prevalence and functional effects of a genomic island for insect symbiosis within Burkholderiaceae
Submitted (22-SEP-2021) Biology Department, University of Texas at Arlington, 501 S. Nedderman Dr., Arlington, TX 76019, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP084276.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2020\nAssembly Method :: SPAdes v. 3.13.0; Unicycler v. 2.4.8-beta\nAssembly Name :: Lep1A1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 60x\nSequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/27/2023 07:33:05\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,237\nCDSs (total) :: 6,157\nGenes (coding) :: 5,985\nCDSs (with protein) :: 5,985\nGenes (RNA) :: 80\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 61\nncRNAs :: 4\nPseudo Genes (total) :: 172\nCDSs (without protein) :: 172\nPseudo Genes (ambiguous residues) :: 0 of 172\nPseudo Genes (frameshifted) :: 85 of 172\nPseudo Genes (incomplete) :: 110 of 172\nPseudo Genes (internal stop) :: 35 of 172\nPseudo Genes (multiple problems) :: 47 of 172\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_007730338.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007750611.1
COORDINATES: similar to AA sequence:RefSeq:WP_015002233.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016347520.1
COORDINATES: similar to AA sequence:RefSeq:WP_008344754.1
COORDINATES: similar to AA sequence:RefSeq:WP_008344757.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006049350.1
phosphatidylserine decarboxylase family protein
COORDINATES: protein motif:HMM:NF012301.2
GO:0000156 - phosphorelay response regulator activity [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00229.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
HAMP domain-containing sensor histidine kinase
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF020037.2
COORDINATES: similar to AA sequence:RefSeq:WP_006048337.1
COORDINATES: similar to AA sequence:RefSeq:WP_020068097.1
COORDINATES: similar to AA sequence:RefSeq:WP_009489977.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: protein motif:HMM:NF013502.2
COORDINATES: protein motif:HMM:NF022603.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013342113.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012402444.1
glutathione S-transferase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014193794.1
COORDINATES: similar to AA sequence:RefSeq:WP_006482449.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010626998.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007745879.1
COORDINATES: similar to AA sequence:RefSeq:WP_019658752.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611570.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_018432186.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013089215.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF033542.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611088.1
COORDINATES: protein motif:HMM:NF015038.2
COORDINATES: similar to AA sequence:RefSeq:WP_011296082.1
COORDINATES: similar to AA sequence:RefSeq:WP_018420324.1
COORDINATES: similar to AA sequence:RefSeq:WP_012584357.1
COORDINATES: similar to AA sequence:RefSeq:WP_016394113.1
COORDINATES: similar to AA sequence:RefSeq:WP_009148193.1
GO:0016787 - hydrolase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007043106.1
COORDINATES: similar to AA sequence:RefSeq:WP_012970245.1
GO:0004722 - protein serine/threonine phosphatase activity [Evidence IEA]
PP2C family serine/threonine-protein phosphatase
COORDINATES: similar to AA sequence:RefSeq:WP_005054295.1
TerY-C metal binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014779255.1
COORDINATES: similar to AA sequence:RefSeq:WP_002210396.1
GO:0006950 - response to stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015731191.1
COORDINATES: similar to AA sequence:RefSeq:WP_000116676.1
COORDINATES: similar to AA sequence:RefSeq:WP_013220953.1
COORDINATES: protein motif:HMM:NF024712.2
COORDINATES: similar to AA sequence:RefSeq:WP_020203393.1
COORDINATES: similar to AA sequence:RefSeq:WP_020203394.1
COORDINATES: similar to AA sequence:RefSeq:WP_020423802.1
COORDINATES: similar to AA sequence:RefSeq:WP_012706476.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018420430.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_018437564.1
COORDINATES: similar to AA sequence:RefSeq:WP_007578722.1
COORDINATES: similar to AA sequence:RefSeq:WP_012218138.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343630.1
COORDINATES: similar to AA sequence:RefSeq:WP_014253283.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_014253282.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612105.1
GO:0015074 - DNA integration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000227970.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612300.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354629.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612103.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: protein motif:HMM:NF025001.2
COORDINATES: similar to AA sequence:RefSeq:WP_008343080.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343082.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_008343233.1
GO:0006378 - mRNA polyadenylation [Evidence IEA]; GO:0016070 - RNA metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007585056.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343269.1
COORDINATES: similar to AA sequence:RefSeq:WP_004588415.1
COORDINATES: protein motif:HMM:NF040041.1
COORDINATES: similar to AA sequence:RefSeq:WP_007584678.1
COORDINATES: similar to AA sequence:RefSeq:WP_007743547.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012211076.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012338825.1
COORDINATES: similar to AA sequence:RefSeq:WP_007584674.1
COORDINATES: similar to AA sequence:RefSeq:WP_009240718.1
COORDINATES: protein motif:HMM:NF023095.2
COORDINATES: similar to AA sequence:RefSeq:WP_017334811.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006755461.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0045893 - positive regulation of DNA-templated transcription [Evidence IEA]
Cd(II)/Pb(II)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006399019.1
COORDINATES: protein motif:HMM:NF028467.2
sensor domain-containing diguanylate cyclase
COORDINATES: similar to AA sequence:RefSeq:WP_008343277.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343281.1
GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012067960.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343289.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343290.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343294.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876267.1
GO:0045027 - DNA end binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008343297.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]
SOS response-associated peptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008345064.1
COORDINATES: similar to AA sequence:RefSeq:WP_008345062.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008345060.1
COORDINATES: protein motif:HMM:NF022337.2
COORDINATES: similar to AA sequence:RefSeq:WP_006762649.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_013958804.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_014253371.1
COORDINATES: similar to AA sequence:RefSeq:WP_014253372.1
COORDINATES: similar to AA sequence:RefSeq:WP_014253373.1
GO:0051782 - negative regulation of cell division [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
translesion DNA synthesis-associated protein ImuA
COORDINATES: similar to AA sequence:RefSeq:WP_014253374.1
GO:0044780 - bacterial-type flagellum assembly [Evidence IEA]; GO:0045893 - positive regulation of DNA-templated transcription [Evidence IEA]
flagellar transcriptional regulator FlhD
COORDINATES: similar to AA sequence:RefSeq:WP_014193239.1
GO:0045893 - positive regulation of DNA-templated transcription [Evidence IEA]; GO:1902208 - regulation of bacterial-type flagellum assembly [Evidence IEA]
flagellar transcriptional regulator FlhC
COORDINATES: similar to AA sequence:RefSeq:WP_014253376.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343335.1
COORDINATES: similar to AA sequence:RefSeq:WP_014253378.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013531564.1
GO:0043546 - molybdopterin cofactor binding [Evidence IEA]
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_006612617.1
xanthine dehydrogenase family protein subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_006018933.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008345946.1
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF018946.2
COORDINATES: similar to AA sequence:RefSeq:WP_086558108.1
COORDINATES: protein motif:HMM:NF013736.2
histidine kinase dimerization/phosphoacceptor domain -containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014253134.1
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014194251.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343340.1
COORDINATES: similar to AA sequence:RefSeq:WP_014253396.1
COORDINATES: protein motif:HMM:NF024140.2
GO:0006935 - chemotaxis [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]
Tar ligand binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006412131.1
COORDINATES: similar to AA sequence:RefSeq:WP_012433256.1
COORDINATES: protein motif:HMM:NF014763.2
GO:0052621 - diguanylate cyclase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611267.1
COORDINATES: similar to AA sequence:RefSeq:WP_018442073.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018424360.1
COORDINATES: similar to AA sequence:RefSeq:WP_008345592.1
COORDINATES: protein motif:HMM:TIGR03824.1
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
flagellar biosynthesis anti-sigma factor FlgM
COORDINATES: similar to AA sequence:RefSeq:WP_008343582.1
COORDINATES: similar to AA sequence:RefSeq:WP_011829931.1
COORDINATES: similar to AA sequence:RefSeq:WP_004362269.1
COORDINATES: protein motif:HMM:NF016255.2
COORDINATES: similar to AA sequence:RefSeq:WP_009917463.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343694.1
COORDINATES: similar to AA sequence:RefSeq:WP_008349155.1
COORDINATES: similar to AA sequence:RefSeq:WP_017330347.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010627561.1
COORDINATES: similar to AA sequence:RefSeq:WP_011085473.1
COORDINATES: similar to AA sequence:RefSeq:WP_009639331.1
COORDINATES: similar to AA sequence:RefSeq:WP_017491842.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_065285158.1
COORDINATES: similar to AA sequence:RefSeq:WP_012405968.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006497975.1
COORDINATES: similar to AA sequence:RefSeq:WP_020067717.1
COORDINATES: similar to AA sequence:RefSeq:WP_006483385.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012968010.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014394741.1
COORDINATES: similar to AA sequence:RefSeq:WP_006483372.1
GO:0016853 - isomerase activity [Evidence IEA]
GO:0006725 - cellular aromatic compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012406529.1
secretin N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013691327.1
COORDINATES: similar to AA sequence:RefSeq:WP_008345355.1
outer membrane protein assembly factor BamA
COORDINATES: protein motif:HMM:NF016348.2
COORDINATES: protein motif:HMM:NF012698.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF022516.2
COORDINATES: similar to AA sequence:RefSeq:WP_008920165.1
COORDINATES: similar to AA sequence:RefSeq:WP_008920164.1
COORDINATES: similar to AA sequence:RefSeq:WP_008964274.1
COORDINATES: similar to AA sequence:RefSeq:WP_009770727.1
COORDINATES: similar to AA sequence:RefSeq:WP_011490102.1
COORDINATES: similar to AA sequence:RefSeq:WP_007875394.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017776454.1
COORDINATES: similar to AA sequence:RefSeq:WP_007732285.1
COORDINATES: similar to AA sequence:RefSeq:WP_007732287.1
COORDINATES: similar to AA sequence:RefSeq:WP_006050422.1
COORDINATES: protein motif:HMM:NF015431.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008141674.1
COORDINATES: similar to AA sequence:RefSeq:WP_019701979.1
COORDINATES: similar to AA sequence:RefSeq:WP_008917280.1
COORDINATES: similar to AA sequence:RefSeq:WP_015876243.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011548482.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_018420669.1
COORDINATES: similar to AA sequence:RefSeq:WP_006205292.1
COORDINATES: similar to AA sequence:RefSeq:WP_006047390.1
COORDINATES: similar to AA sequence:RefSeq:WP_006047389.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343403.1
COORDINATES: similar to AA sequence:RefSeq:NP_858152.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase.; TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_007682746.1
COORDINATES: similar to AA sequence:RefSeq:WP_008345350.1
COORDINATES: similar to AA sequence:RefSeq:WP_006399628.1
COORDINATES: similar to AA sequence:RefSeq:WP_008345783.1
COORDINATES: similar to AA sequence:RefSeq:WP_008345784.1
COORDINATES: similar to AA sequence:RefSeq:WP_013342167.1
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008955302.1
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: similar to AA sequence:RefSeq:WP_006397256.1
COORDINATES: similar to AA sequence:RefSeq:WP_006494238.1
COORDINATES: similar to AA sequence:RefSeq:WP_006159523.1
COORDINATES: similar to AA sequence:RefSeq:WP_017775028.1
COORDINATES: similar to AA sequence:RefSeq:WP_007081011.1
COORDINATES: protein motif:HMM:NF019874.2
COORDINATES: similar to AA sequence:RefSeq:WP_010684361.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611796.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611695.1
COORDINATES: similar to AA sequence:RefSeq:WP_006484960.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611495.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012742.2
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004119500.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
sugar ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF014684.2
GO:0005886 - plasma membrane [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010437239.1
COORDINATES: similar to AA sequence:RefSeq:WP_015003769.1
GO:0008674 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase activity [Evidence IEA]
GO:0034194 - D-galactonate catabolic process [Evidence IEA]
2-dehydro-3-deoxy-6-phosphogalactonate aldolase
COORDINATES: similar to AA sequence:RefSeq:WP_007876781.1
COORDINATES: similar to AA sequence:RefSeq:WP_018438031.1
COORDINATES: similar to AA sequence:RefSeq:WP_007874999.1
2,4'-dihydroxyacetophenone dioxygenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013168153.1
COORDINATES: similar to AA sequence:RefSeq:WP_003274381.1
COORDINATES: protein motif:HMM:NF021778.2
GO:0052689 - carboxylic ester hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_010968050.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018183155.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018067388.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
GMC family oxidoreductase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007880056.1
COORDINATES: similar to AA sequence:RefSeq:WP_010394252.1
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0008888 - glycerol dehydrogenase [NAD+] activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013512231.1
COORDINATES: protein motif:HMM:NF015682.2
COORDINATES: similar to AA sequence:RefSeq:WP_013512236.1
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012702314.1
COORDINATES: similar to AA sequence:RefSeq:WP_013512235.1
COORDINATES: similar to AA sequence:RefSeq:WP_008448977.1
COORDINATES: similar to AA sequence:RefSeq:WP_012336403.1
COORDINATES: similar to AA sequence:RefSeq:WP_013698220.1
COORDINATES: similar to AA sequence:RefSeq:WP_018699733.1
COORDINATES: similar to AA sequence:RefSeq:WP_014286317.1
COORDINATES: similar to AA sequence:RefSeq:WP_006046745.1
GO:0016901 - oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor [Evidence IEA]
GO:0006089 - lactate metabolic process [Evidence IEA]; GO:0019516 - lactate oxidation [Evidence IEA]
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0000976 - transcription cis-regulatory region binding [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]; GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015316589.1
COORDINATES: similar to AA sequence:RefSeq:WP_015663192.1
COORDINATES: protein motif:HMM:NF012398.2
COORDINATES: protein motif:HMM:NF013053.2
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: protein motif:HMM:NF024799.2
COORDINATES: protein motif:HMM:NF024950.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_014198908.1
COORDINATES: protein motif:HMM:NF020039.2
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
SMP-30/gluconolactonase/LRE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014603539.1
COORDINATES: similar to AA sequence:RefSeq:WP_013511696.1
COORDINATES: similar to AA sequence:RefSeq:WP_012330618.1
GO:0019172 - glyoxalase III activity [Evidence IEA]
type 1 glutamine amidotransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008484288.1
COORDINATES: similar to AA sequence:RefSeq:WP_013510428.1
COORDINATES: similar to AA sequence:RefSeq:WP_006409619.1
GO:0015109 - chromate transmembrane transporter activity [Evidence IEA]
GO:0015703 - chromate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006406293.1
COORDINATES: similar to AA sequence:RefSeq:WP_016345398.1
COORDINATES: similar to AA sequence:RefSeq:WP_012402521.1
COORDINATES: protein motif:HMM:NF016777.2
COORDINATES: protein motif:HMM:NF036686.2
COORDINATES: protein motif:HMM:NF012312.2
COORDINATES: protein motif:HMM:NF013706.2
GO:0003824 - catalytic activity [Evidence IEA]
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020798267.1
COORDINATES: similar to AA sequence:RefSeq:WP_011491033.1
COORDINATES: protein motif:HMM:NF013098.2
phosphate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015828434.1
COORDINATES: protein motif:HMM:NF027232.2
COORDINATES: similar to AA sequence:RefSeq:WP_008344727.1
COORDINATES: similar to AA sequence:RefSeq:WP_011875462.1
COORDINATES: similar to AA sequence:RefSeq:WP_014253204.1
COORDINATES: similar to AA sequence:RefSeq:WP_014631976.1
COORDINATES: similar to AA sequence:RefSeq:WP_018907227.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008349153.1
COORDINATES: similar to AA sequence:RefSeq:WP_014252865.1
COORDINATES: similar to AA sequence:RefSeq:WP_014252866.1
COORDINATES: similar to AA sequence:RefSeq:WP_011493397.1
COORDINATES: similar to AA sequence:RefSeq:WP_013233344.1
COORDINATES: similar to AA sequence:RefSeq:WP_006157133.1
COORDINATES: similar to AA sequence:RefSeq:WP_013697292.1
COORDINATES: similar to AA sequence:RefSeq:WP_003816292.1
COORDINATES: similar to AA sequence:RefSeq:WP_014253203.1
COORDINATES: similar to AA sequence:RefSeq:WP_014253298.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558310.1
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012606173.1
COORDINATES: similar to AA sequence:RefSeq:WP_085938460.1
COORDINATES: similar to AA sequence:RefSeq:WP_012407036.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003235872.1
COORDINATES: similar to AA sequence:RefSeq:WP_019365567.1
GO:0008767 - UDP-galactopyranose mutase activity [Evidence IEA]
GO:0009273 - peptidoglycan-based cell wall biogenesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013587663.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013245.2
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014091097.1
COORDINATES: similar to AA sequence:RefSeq:WP_000734010.1
COORDINATES: similar to AA sequence:RefSeq:WP_011758229.1
COORDINATES: protein motif:HMM:NF019148.2
WavE lipopolysaccharide synthesis family protein
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: protein motif:HMM:NF013884.2
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015933432.1