Caballeronia grimmiae strain Lep1A1 plasmid p2, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Caballeronia.
Prevalence and functional effects of a genomic island for insect symbiosis within Burkholderiaceae
Submitted (22-SEP-2021) Biology Department, University of Texas at Arlington, 501 S. Nedderman Dr., Arlington, TX 76019, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP084275.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2020\nAssembly Method :: SPAdes v. 3.13.0; Unicycler v. 2.4.8-beta\nAssembly Name :: Lep1A1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 60x\nSequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/27/2023 07:33:05\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,237\nCDSs (total) :: 6,157\nGenes (coding) :: 5,985\nCDSs (with protein) :: 5,985\nGenes (RNA) :: 80\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 61\nncRNAs :: 4\nPseudo Genes (total) :: 172\nCDSs (without protein) :: 172\nPseudo Genes (ambiguous residues) :: 0 of 172\nPseudo Genes (frameshifted) :: 85 of 172\nPseudo Genes (incomplete) :: 110 of 172\nPseudo Genes (internal stop) :: 35 of 172\nPseudo Genes (multiple problems) :: 47 of 172\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_014194395.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019334790.1
GO:0003896 - DNA primase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011876151.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876150.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011876149.1
GO:0009340 - DNA topoisomerase IV complex [Evidence IEA]
GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016486952.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876147.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194406.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194407.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011876144.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876143.1
GO:0042834 - peptidoglycan binding [Evidence IEA]; GO:0015288 - porin activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011876142.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_011876141.1
type IV conjugative transfer system protein TraE
COORDINATES: similar to AA sequence:RefSeq:WP_014194408.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_011876139.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194409.1
type IV conjugative transfer system lipoprotein TraV
COORDINATES: similar to AA sequence:RefSeq:WP_011876137.1
TraA family conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_011876136.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194411.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194412.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011876133.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876132.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194414.1
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011876130.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
thiol:disulfide interchange protein DsbA/DsbL
COORDINATES: similar to AA sequence:RefSeq:WP_011876129.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876128.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876127.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011876126.1
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011876125.1
COORDINATES: similar to AA sequence:RefSeq:WP_018007794.1
GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
adenosylcobalamin-dependent ribonucleoside-diphosphate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_011876123.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876122.1
COORDINATES: protein motif:HMM:NF016214.2
COORDINATES: similar to AA sequence:RefSeq:WP_011876120.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876119.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876118.1
COORDINATES: similar to AA sequence:RefSeq:WP_019140060.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194420.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876115.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194421.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876113.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876112.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011876109.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194425.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194426.1
COORDINATES: similar to AA sequence:RefSeq:WP_012428335.1
COORDINATES: similar to AA sequence:RefSeq:WP_011235976.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011876106.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876105.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011876104.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194430.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194432.1
GO:0016787 - hydrolase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018420282.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876099.1
COORDINATES: similar to AA sequence:RefSeq:WP_012431047.1
COORDINATES: similar to AA sequence:RefSeq:WP_008344506.1
COORDINATES: similar to AA sequence:RefSeq:WP_012405453.1
carboxypeptidase regulatory-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012405449.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0019829 - ATPase-coupled monoatomic cation transmembrane transporter activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0015662 - P-type ion transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009900156.1
GO:0032559 - adenyl ribonucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012405447.1
COORDINATES: similar to AA sequence:RefSeq:WP_012405526.1
COORDINATES: similar to AA sequence:RefSeq:WP_012405525.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012405524.1
GO:0009055 - electron transfer activity [Evidence IEA]
cytochrome b/b6 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013338261.1
COORDINATES: similar to AA sequence:RefSeq:WP_011880359.1
COORDINATES: similar to AA sequence:RefSeq:WP_012405521.1
COORDINATES: similar to AA sequence:RefSeq:WP_017772977.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_014087758.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013093764.1
COORDINATES: similar to AA sequence:RefSeq:WP_009206507.1
COORDINATES: similar to AA sequence:RefSeq:WP_006765902.1
COORDINATES: protein motif:HMM:NF012905.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018442728.1
COORDINATES: similar to AA sequence:RefSeq:WP_013500206.1
GO:0016783 - sulfurtransferase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012405444.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012405443.1
COORDINATES: similar to AA sequence:RefSeq:WP_007741003.1
COORDINATES: similar to AA sequence:RefSeq:WP_007741005.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_009770336.1
COORDINATES: similar to AA sequence:RefSeq:WP_012405439.1
bifunctional protein tyrosine phosphatase family protein/NAD(P)/FAD-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_012405437.1
COORDINATES: similar to AA sequence:RefSeq:WP_012405436.1
GO:0042597 - periplasmic space [Evidence IEA]
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]
GO:0022900 - electron transport chain [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011880346.1
COORDINATES: similar to AA sequence:RefSeq:WP_009769576.1
COORDINATES: similar to AA sequence:RefSeq:WP_011630439.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019572540.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0015446 - ATPase-coupled arsenite transmembrane transporter activity [Evidence IEA]
GO:0071722 - detoxification of arsenic-containing substance [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012218068.1
COORDINATES: protein motif:HMM:NF017528.2
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase.; TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_012404184.1
COORDINATES: similar to AA sequence:RefSeq:WP_017455563.1
COORDINATES: protein motif:HMM:NF025054.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007578536.1
COORDINATES: similar to AA sequence:RefSeq:WP_020066697.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015004415.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
FAD-binding and (Fe-S)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015877885.1
COORDINATES: similar to AA sequence:RefSeq:WP_010099285.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005667535.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007183039.1
COORDINATES: protein motif:HMM:NF013698.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004966400.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019671844.1
GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) activity [Evidence IEA]
catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; Derived by automated computational analysis using gene prediction method: Protein Homology.
tetrahydrofolate dehydrogenase/cyclohydrolase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012045621.1
produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF021456.2
COORDINATES: similar to AA sequence:RefSeq:WP_014192982.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
type VI secretion system tip protein TssI/VgrG
COORDINATES: similar to AA sequence:RefSeq:WP_009981804.1
COORDINATES: similar to AA sequence:RefSeq:WP_016347258.1
COORDINATES: similar to AA sequence:RefSeq:WP_007863889.1
COORDINATES: similar to AA sequence:RefSeq:WP_016347273.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691483.1
COORDINATES: similar to AA sequence:RefSeq:WP_003125303.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003125302.1
COORDINATES: similar to AA sequence:RefSeq:WP_014252785.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: similar to AA sequence:RefSeq:WP_011812552.1
COORDINATES: similar to AA sequence:RefSeq:WP_007731379.1
COORDINATES: similar to AA sequence:RefSeq:WP_006334031.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611203.1
COORDINATES: similar to AA sequence:RefSeq:WP_009769829.1
COORDINATES: similar to AA sequence:RefSeq:WP_011749831.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014194161.1
COORDINATES: similar to AA sequence:RefSeq:WP_014193518.1
COORDINATES: similar to AA sequence:RefSeq:WP_004189750.1
electron transfer flavoprotein subunit beta/FixA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008642602.1
COORDINATES: similar to AA sequence:RefSeq:WP_014087253.1
COORDINATES: similar to AA sequence:RefSeq:WP_008349700.1
COORDINATES: similar to AA sequence:RefSeq:WP_018328813.1
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014442845.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: similar to AA sequence:RefSeq:WP_004670189.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF012655.2
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF024039.2
COORDINATES: protein motif:HMM:NF015411.2
GO:0050661 - NADP binding [Evidence IEA]
NAD(P)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015875939.1
COORDINATES: similar to AA sequence:RefSeq:WP_011492285.1
COORDINATES: similar to AA sequence:RefSeq:WP_009480710.1
phytanoyl-CoA dioxygenase family protein
COORDINATES: protein motif:HMM:NF013739.2
COORDINATES: similar to AA sequence:RefSeq:WP_009914500.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019013.2
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019247888.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011492421.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_047215127.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077905.1
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_086558343.1
COORDINATES: similar to AA sequence:RefSeq:WP_008344798.1
COORDINATES: similar to AA sequence:RefSeq:WP_006029855.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006482547.1
COORDINATES: similar to AA sequence:RefSeq:WP_007179250.1
COORDINATES: similar to AA sequence:RefSeq:WP_013088974.1
COORDINATES: similar to AA sequence:RefSeq:WP_007179252.1
COORDINATES: similar to AA sequence:RefSeq:WP_012428330.1
COORDINATES: similar to AA sequence:RefSeq:WP_012428329.1
COORDINATES: similar to AA sequence:RefSeq:WP_012700460.1
COORDINATES: protein motif:HMM:NF014218.2
COORDINATES: similar to AA sequence:RefSeq:WP_008403788.1
COORDINATES: protein motif:HMM:NF024092.2
COORDINATES: similar to AA sequence:RefSeq:WP_017775039.1
COORDINATES: protein motif:HMM:NF012544.2
COORDINATES: protein motif:HMM:NF014585.2
hydantoinase B/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006370906.1
hydantoinase/oxoprolinase family protein
COORDINATES: protein motif:HMM:NF012428.2
aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012642487.1
COORDINATES: similar to AA sequence:RefSeq:WP_015443713.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611734.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF019640.2
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013848432.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019451408.1
GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0051903 - S-(hydroxymethyl)glutathione dehydrogenase activity [Evidence IEA]
GO:0006113 - fermentation [Evidence IEA]; GO:0009404 - toxin metabolic process [Evidence IEA]
S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_014192821.1
COORDINATES: similar to AA sequence:RefSeq:WP_014192820.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006407352.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194165.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876172.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194166.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_014194167.1
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: similar to AA sequence:RefSeq:WP_014194169.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194170.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194171.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876179.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876180.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876181.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
5'-3' exonuclease H3TH domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011876182.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194176.1
GO:0009318 - exodeoxyribonuclease VII complex [Evidence IEA]
GO:0008855 - exodeoxyribonuclease VII activity [Evidence IEA]
GO:0006308 - DNA catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014194177.1
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014194178.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194179.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876187.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194181.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194182.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876190.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194183.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876192.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011876195.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876196.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876197.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876198.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194189.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876200.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876201.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876202.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876203.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194190.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876205.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194191.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876207.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876208.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876209.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876211.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876212.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876215.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876216.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876217.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194201.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876219.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194203.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194204.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194205.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194206.1
GO:0000166 - nucleotide binding [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011876227.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876228.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876229.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876230.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876231.1
COORDINATES: similar to AA sequence:RefSeq:WP_013436684.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876233.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194217.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876236.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876237.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876238.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194221.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876240.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194223.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876242.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194225.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194226.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194227.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876246.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876247.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876248.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194231.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194232.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194233.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876252.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194235.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876255.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194238.1
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014194239.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194240.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194241.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194242.1
COORDINATES: similar to AA sequence:RefSeq:WP_014253371.1
COORDINATES: similar to AA sequence:RefSeq:WP_014253372.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194245.1
GO:0051782 - negative regulation of cell division [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
translesion DNA synthesis-associated protein ImuA
COORDINATES: similar to AA sequence:RefSeq:WP_011876261.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194247.1
COORDINATES: similar to AA sequence:RefSeq:WP_012404050.1
GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014194250.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876266.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876267.1
GO:0045027 - DNA end binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014194254.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876271.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876273.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194257.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194258.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876276.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876277.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876278.1
SET domain-containing protein-lysine N-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_014194263.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194264.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194265.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016725402.1
type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011876283.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876284.1
COORDINATES: similar to AA sequence:RefSeq:WP_007181179.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: similar to AA sequence:RefSeq:WP_011876287.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
autotransporter strand-loop-strand O-heptosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011876288.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876289.1
protein-disulfide reductase DsbD family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011876290.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194269.1
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014194272.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194273.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876299.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194274.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194277.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876305.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876306.1
GO:0004519 - endonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014194279.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876309.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876310.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876312.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876314.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876316.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876317.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194288.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194289.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194290.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194291.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194292.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876323.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194293.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876325.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194294.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194295.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194296.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194299.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876331.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876332.1
COORDINATES: similar to AA sequence:RefSeq:WP_006497777.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876334.1
COORDINATES: similar to AA sequence:RefSeq:WP_006482759.1
GO:0006950 - response to stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014194301.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876337.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876338.1
COORDINATES: protein motif:HMM:NF022441.2
COORDINATES: similar to AA sequence:RefSeq:WP_014194304.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194306.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876343.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876345.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876346.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194309.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876350.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194311.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876352.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876353.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011876355.1
type II toxin-antitoxin system MqsA family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_014194314.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194315.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194316.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876359.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194318.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194319.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011876363.1
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011876364.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194322.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876366.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876368.1
autotransporter domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014194326.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876370.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876371.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011876372.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194329.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194330.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876375.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194332.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876377.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876378.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194335.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876381.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194339.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876383.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194341.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876385.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194342.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194343.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194344.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876389.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194346.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194349.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876395.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876396.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876026.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_014194377.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194378.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_011876029.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194381.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194382.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194383.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011876039.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194387.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003911 - DNA ligase (NAD+) activity [Evidence IEA]
GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014194388.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876158.1
GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011876157.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876156.1
COORDINATES: similar to AA sequence:RefSeq:WP_011831589.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194394.1