Caballeronia grimmiae strain Lep1A1 chromosome 3, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Caballeronia.
Prevalence and functional effects of a genomic island for insect symbiosis within Burkholderiaceae
Submitted (22-SEP-2021) Biology Department, University of Texas at Arlington, 501 S. Nedderman Dr., Arlington, TX 76019, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP084274.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2020\nAssembly Method :: SPAdes v. 3.13.0; Unicycler v. 2.4.8-beta\nAssembly Name :: Lep1A1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 60x\nSequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/27/2023 07:33:05\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,237\nCDSs (total) :: 6,157\nGenes (coding) :: 5,985\nCDSs (with protein) :: 5,985\nGenes (RNA) :: 80\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 61\nncRNAs :: 4\nPseudo Genes (total) :: 172\nCDSs (without protein) :: 172\nPseudo Genes (ambiguous residues) :: 0 of 172\nPseudo Genes (frameshifted) :: 85 of 172\nPseudo Genes (incomplete) :: 110 of 172\nPseudo Genes (internal stop) :: 35 of 172\nPseudo Genes (multiple problems) :: 47 of 172\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF014763.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012404486.1
COORDINATES: similar to AA sequence:RefSeq:WP_008346655.1
COORDINATES: similar to AA sequence:RefSeq:WP_008346653.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008346652.1
COORDINATES: similar to AA sequence:RefSeq:WP_008346650.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008346648.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: protein motif:HMM:NF012596.2
enoyl-CoA hydratase/isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013093447.1
COORDINATES: similar to AA sequence:RefSeq:WP_008346643.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018424300.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008346639.1
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007177283.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007177282.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014253065.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008347307.1
GO:0009436 - glyoxylate catabolic process [Evidence IEA]; GO:0071704 - organic substance metabolic process [Evidence IEA]
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011491869.1
COORDINATES: similar to AA sequence:RefSeq:WP_008347310.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016347753.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006046745.1
GO:0016901 - oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor [Evidence IEA]
GO:0006089 - lactate metabolic process [Evidence IEA]; GO:0019516 - lactate oxidation [Evidence IEA]
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_017450200.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017451817.1
COORDINATES: similar to AA sequence:RefSeq:WP_007177404.1
COORDINATES: similar to AA sequence:RefSeq:WP_012428017.1
COORDINATES: similar to AA sequence:RefSeq:WP_018435974.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0022904 - respiratory electron transport chain [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018435973.1
COORDINATES: similar to AA sequence:RefSeq:WP_015012137.1
COORDINATES: protein motif:HMM:NF012245.2
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: protein motif:HMM:NF013731.2
COORDINATES: similar to AA sequence:RefSeq:WP_012354629.1
COORDINATES: similar to AA sequence:RefSeq:WP_014253298.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014193905.1
GO:0030552 - cAMP binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014972437.1
COORDINATES: similar to AA sequence:RefSeq:WP_013587689.1
COORDINATES: similar to AA sequence:RefSeq:WP_014193794.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006412131.1
COORDINATES: similar to AA sequence:RefSeq:WP_008344629.1
COORDINATES: protein motif:HMM:NF012464.2
COORDINATES: similar to AA sequence:RefSeq:WP_012426343.1
COORDINATES: similar to AA sequence:RefSeq:WP_014427907.1
GO:0008767 - UDP-galactopyranose mutase activity [Evidence IEA]
GO:0009273 - peptidoglycan-based cell wall biogenesis [Evidence IEA]
COORDINATES: protein motif:HMM:NF025072.2
COORDINATES: protein motif:HMM:NF012457.2
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014193614.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
carboxyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011488391.1
COORDINATES: similar to AA sequence:RefSeq:WP_008918348.1
COORDINATES: similar to AA sequence:RefSeq:WP_014252481.1
COORDINATES: similar to AA sequence:RefSeq:WP_013541448.1
COORDINATES: similar to AA sequence:RefSeq:WP_005669607.1
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF015431.2
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006218219.1
GO:0009055 - electron transfer activity [Evidence IEA]
electron transfer flavoprotein subunit beta/FixA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006225134.1
COORDINATES: similar to AA sequence:RefSeq:WP_014750850.1
COORDINATES: similar to AA sequence:RefSeq:WP_011809832.1
GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011809836.1
COORDINATES: similar to AA sequence:RefSeq:WP_011809837.1
COORDINATES: similar to AA sequence:RefSeq:WP_011350539.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011809830.1
COORDINATES: similar to AA sequence:RefSeq:WP_017453568.1
GO:0004751 - ribose-5-phosphate isomerase activity [Evidence IEA]
GO:0009052 - pentose-phosphate shunt, non-oxidative branch [Evidence IEA]
COORDINATES: protein motif:HMM:NF013539.2
GO:0097367 - carbohydrate derivative binding [Evidence IEA]
GO:1901135 - carbohydrate derivative metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024811.2
GO:0016787 - hydrolase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01312.1
GO:0005515 - protein binding [Evidence IEA]; GO:0004856 - xylulokinase activity [Evidence IEA]
GO:0042732 - D-xylose metabolic process [Evidence IEA]; GO:0005997 - xylulose metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012398.2
COORDINATES: similar to AA sequence:RefSeq:WP_006464860.1
GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017453565.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017453566.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009770160.1
COORDINATES: similar to AA sequence:RefSeq:WP_012405348.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015039312.1
COORDINATES: similar to AA sequence:RefSeq:WP_016347816.1
COORDINATES: similar to AA sequence:RefSeq:WP_006297491.1
COORDINATES: similar to AA sequence:RefSeq:WP_009967764.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
PLP-dependent aminotransferase family protein
COORDINATES: protein motif:HMM:NF012550.2
COORDINATES: similar to AA sequence:RefSeq:WP_006046936.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007741017.1
COORDINATES: similar to AA sequence:RefSeq:WP_007741016.1
ATP citrate lyase citrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013591838.1
COORDINATES: similar to AA sequence:RefSeq:WP_012404514.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013756.2
COORDINATES: similar to AA sequence:RefSeq:WP_014253109.1
COORDINATES: protein motif:HMM:NF028467.2
sensor domain-containing diguanylate cyclase
COORDINATES: similar to AA sequence:RefSeq:WP_013952014.1
GO:0004160 - dihydroxy-acid dehydratase activity [Evidence IEA]
GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014193116.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007884364.1
COORDINATES: similar to AA sequence:RefSeq:WP_020070453.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010093737.1
COORDINATES: similar to AA sequence:RefSeq:WP_018310916.1
COORDINATES: similar to AA sequence:RefSeq:WP_018436747.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: similar to AA sequence:RefSeq:WP_006752387.1
COORDINATES: similar to AA sequence:RefSeq:WP_018422159.1
COORDINATES: similar to AA sequence:RefSeq:WP_006412469.1
COORDINATES: similar to AA sequence:RefSeq:WP_008346957.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013591607.1
COORDINATES: similar to AA sequence:RefSeq:WP_007583234.1
aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020071324.1
winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006049120.1
GO:0009027 - tartrate dehydrogenase activity [Evidence IEA]
GO:0046395 - carboxylic acid catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012405759.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_014193692.1
COORDINATES: similar to AA sequence:RefSeq:WP_007583246.1
COORDINATES: similar to AA sequence:RefSeq:WP_008346971.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012405763.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
GMC family oxidoreductase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008346974.1
COORDINATES: similar to AA sequence:RefSeq:WP_020066572.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014973003.1
COORDINATES: similar to AA sequence:RefSeq:WP_007583260.1
COORDINATES: similar to AA sequence:RefSeq:WP_014193700.1
COORDINATES: similar to AA sequence:RefSeq:WP_020066576.1
COORDINATES: similar to AA sequence:RefSeq:WP_012405770.1
COORDINATES: similar to AA sequence:RefSeq:WP_008346981.1
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008346982.1
COORDINATES: similar to AA sequence:RefSeq:WP_008346983.1
COORDINATES: similar to AA sequence:RefSeq:WP_006049133.1
COORDINATES: similar to AA sequence:RefSeq:WP_008346987.1
COORDINATES: similar to AA sequence:RefSeq:WP_008346989.1
COORDINATES: similar to AA sequence:RefSeq:WP_007579841.1
COORDINATES: similar to AA sequence:RefSeq:WP_016347434.1
COORDINATES: similar to AA sequence:RefSeq:WP_012427931.1
COORDINATES: similar to AA sequence:RefSeq:WP_011549842.1
GO:0018784 - (S)-2-haloacid dehalogenase activity [Evidence IEA]
GO:0006805 - xenobiotic metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014193712.1
GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016347438.1
COORDINATES: similar to AA sequence:RefSeq:WP_008347001.1
COORDINATES: similar to AA sequence:RefSeq:WP_016347440.1
COORDINATES: similar to AA sequence:RefSeq:WP_014193716.1
COORDINATES: similar to AA sequence:RefSeq:WP_012432518.1
COORDINATES: similar to AA sequence:RefSeq:WP_016354473.1
COORDINATES: similar to AA sequence:RefSeq:WP_006409251.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012493824.1
COORDINATES: similar to AA sequence:RefSeq:WP_013689753.1
COORDINATES: similar to AA sequence:RefSeq:WP_017773988.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014972462.1
COORDINATES: protein motif:HMM:NF025013.2
COORDINATES: similar to AA sequence:RefSeq:WP_019936217.1
COORDINATES: similar to AA sequence:RefSeq:WP_011491759.1
COORDINATES: similar to AA sequence:RefSeq:WP_006051331.1
H-NS family nucleoid-associated regulatory protein
COORDINATES: similar to AA sequence:RefSeq:WP_008348555.1
COORDINATES: similar to AA sequence:RefSeq:WP_014900358.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0070573 - metallodipeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006756989.1
PAS and helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017874729.1
GO:0008081 - phosphoric diester hydrolase activity [Evidence IEA]
GO:0006629 - lipid metabolic process [Evidence IEA]
glycerophosphodiester phosphodiesterase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018422225.1
COORDINATES: similar to AA sequence:RefSeq:WP_007178691.1
COORDINATES: similar to AA sequence:RefSeq:WP_008348232.1
COORDINATES: similar to AA sequence:RefSeq:WP_012492593.1
COORDINATES: similar to AA sequence:RefSeq:WP_018003961.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007730163.1
COORDINATES: similar to AA sequence:RefSeq:WP_008348258.1
organic hydroperoxide resistance protein
COORDINATES: similar to AA sequence:RefSeq:WP_013590912.1
COORDINATES: similar to AA sequence:RefSeq:WP_013342600.1
COORDINATES: similar to AA sequence:RefSeq:WP_018422680.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014252237.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_007743337.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
GO:0017004 - cytochrome complex assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006766468.1
COORDINATES: similar to AA sequence:RefSeq:WP_018434012.1
COORDINATES: similar to AA sequence:RefSeq:WP_005794973.1
COORDINATES: similar to AA sequence:RefSeq:WP_008167446.1
COORDINATES: similar to AA sequence:RefSeq:WP_012493688.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008347551.1
COORDINATES: similar to AA sequence:RefSeq:WP_008346750.1
This protein belongs to a clade of uncharacterized proteins related to peroxidases such as the alkylhydroperoxidase AhpD.; This protein belongs to a clade of uncharacterized proteins related to peroxidases such as the alkylhydroperoxidase AhpD; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012427916.1
COORDINATES: similar to AA sequence:RefSeq:WP_020070877.1
COORDINATES: similar to AA sequence:RefSeq:WP_006767064.1
COORDINATES: similar to AA sequence:RefSeq:WP_019937766.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094234.1
sulfonate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_016348196.1
COORDINATES: similar to AA sequence:RefSeq:WP_006049363.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00050
FMN riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_008348647.1
GO:0009349 - riboflavin synthase complex [Evidence IEA]
GO:0000906 - 6,7-dimethyl-8-ribityllumazine synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006047575.1
COORDINATES: similar to AA sequence:RefSeq:WP_006047574.1
COORDINATES: similar to AA sequence:RefSeq:WP_006047573.1
COORDINATES: similar to AA sequence:RefSeq:WP_006047572.1
COORDINATES: protein motif:HMM:NF021565.2
COORDINATES: similar to AA sequence:RefSeq:WP_006047570.1
D-ribose ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_020566577.1
COORDINATES: similar to AA sequence:RefSeq:WP_006047568.1
transketolase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006047567.1
COORDINATES: similar to AA sequence:RefSeq:WP_006047566.1
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012404412.1
COORDINATES: similar to AA sequence:RefSeq:WP_006049695.1
SMP-30/gluconolactonase/LRE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020070932.1
COORDINATES: similar to AA sequence:RefSeq:WP_020070931.1
COORDINATES: similar to AA sequence:RefSeq:WP_020070930.1
COORDINATES: similar to AA sequence:RefSeq:WP_020070929.1
COORDINATES: similar to AA sequence:RefSeq:WP_006048941.1
COORDINATES: similar to AA sequence:RefSeq:WP_018443924.1
COORDINATES: similar to AA sequence:RefSeq:WP_013089543.1
COORDINATES: similar to AA sequence:RefSeq:WP_015002421.1
GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007586059.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013543759.1
tannase/feruloyl esterase family alpha/beta hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_013588969.1
COORDINATES: similar to AA sequence:RefSeq:WP_013588970.1
COORDINATES: similar to AA sequence:RefSeq:WP_020065451.1
COORDINATES: similar to AA sequence:RefSeq:WP_013092576.1
COORDINATES: similar to AA sequence:RefSeq:WP_017774833.1
COORDINATES: similar to AA sequence:RefSeq:WP_014193797.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094238.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013588267.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094379.1
COORDINATES: similar to AA sequence:RefSeq:WP_006767280.1
COORDINATES: similar to AA sequence:RefSeq:WP_014973164.1
COORDINATES: similar to AA sequence:RefSeq:WP_008345700.1
COORDINATES: similar to AA sequence:RefSeq:WP_020070081.1
COORDINATES: similar to AA sequence:RefSeq:WP_014253209.1
COORDINATES: similar to AA sequence:RefSeq:WP_008346664.1
COORDINATES: similar to AA sequence:RefSeq:WP_012403863.1
COORDINATES: similar to AA sequence:RefSeq:WP_008346666.1
COORDINATES: similar to AA sequence:RefSeq:WP_016346944.1
GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0001072 - transcription antitermination factor activity, RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010109313.1
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: similar to AA sequence:RefSeq:WP_010110832.1
iron-containing redox enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018440911.1
GO:0019867 - outer membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017978172.1
COORDINATES: similar to AA sequence:RefSeq:WP_017777914.1
COORDINATES: similar to AA sequence:RefSeq:WP_013591476.1
COORDINATES: similar to AA sequence:RefSeq:WP_006752861.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020066282.1
COORDINATES: similar to AA sequence:RefSeq:WP_013590420.1
COORDINATES: similar to AA sequence:RefSeq:WP_014971987.1
COORDINATES: similar to AA sequence:RefSeq:WP_020066285.1
COORDINATES: similar to AA sequence:RefSeq:WP_006050366.1
COORDINATES: similar to AA sequence:RefSeq:WP_007176037.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011490655.1
COORDINATES: similar to AA sequence:RefSeq:WP_013342937.1
GO:0000166 - nucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013590427.1
COORDINATES: similar to AA sequence:RefSeq:WP_017775217.1
COORDINATES: similar to AA sequence:RefSeq:WP_008923599.1
COORDINATES: similar to AA sequence:RefSeq:WP_016346955.1
COORDINATES: similar to AA sequence:RefSeq:WP_014190966.1
COORDINATES: similar to AA sequence:RefSeq:WP_008346743.1
COORDINATES: similar to AA sequence:RefSeq:WP_014193749.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012404479.1
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008346747.1
COORDINATES: similar to AA sequence:RefSeq:WP_006400271.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]; GO:0005488 - binding [Evidence IEA]
GO:0042918 - alkanesulfonate transport [Evidence IEA]
aliphatic sulfonate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006484157.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013089278.1
aliphatic sulfonate ABC transporter permease SsuC
COORDINATES: similar to AA sequence:RefSeq:WP_014722969.1
GO:0008726 - alkanesulfonate monooxygenase activity [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
FMNH2-dependent alkanesulfonate monooxygenase
COORDINATES: similar to AA sequence:RefSeq:WP_013092838.1
COORDINATES: similar to AA sequence:RefSeq:WP_016348366.1
COORDINATES: similar to AA sequence:RefSeq:WP_017777475.1
COORDINATES: similar to AA sequence:RefSeq:WP_014252851.1
COORDINATES: similar to AA sequence:RefSeq:WP_019655852.1
COORDINATES: similar to AA sequence:RefSeq:WP_008346855.1
COORDINATES: similar to AA sequence:RefSeq:WP_007748623.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014252855.1
COORDINATES: similar to AA sequence:RefSeq:WP_014252856.1
hydantoinase B/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007748645.1
hydantoinase/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020205659.1
COORDINATES: similar to AA sequence:RefSeq:WP_013591903.1
ATP-grasp fold amidoligase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016347520.1
COORDINATES: similar to AA sequence:RefSeq:WP_014252875.1
COORDINATES: similar to AA sequence:RefSeq:WP_016346887.1
COORDINATES: similar to AA sequence:RefSeq:WP_012427211.1
COORDINATES: similar to AA sequence:RefSeq:WP_012372191.1
COORDINATES: similar to AA sequence:RefSeq:WP_008345696.1
COORDINATES: similar to AA sequence:RefSeq:WP_006047979.1
COORDINATES: similar to AA sequence:RefSeq:WP_006481271.1
COORDINATES: similar to AA sequence:RefSeq:WP_011494367.1
COORDINATES: similar to AA sequence:RefSeq:WP_012212509.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094011.1
COORDINATES: similar to AA sequence:RefSeq:WP_008345677.1
glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_014253126.1
YihY/virulence factor BrkB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013591481.1
COORDINATES: similar to AA sequence:RefSeq:WP_004188217.1
COORDINATES: similar to AA sequence:RefSeq:WP_009553388.1
COORDINATES: similar to AA sequence:RefSeq:WP_008346150.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012406636.1
COORDINATES: similar to AA sequence:RefSeq:WP_015004605.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_016346801.1
COORDINATES: similar to AA sequence:RefSeq:WP_008346196.1
Lrp/AsnC ligand binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010099870.1
GO:0008660 - 1-aminocyclopropane-1-carboxylate deaminase activity [Evidence IEA]
GO:0042217 - 1-aminocyclopropane-1-carboxylate catabolic process [Evidence IEA]
1-aminocyclopropane-1-carboxylate deaminase
COORDINATES: similar to AA sequence:RefSeq:WP_014724414.1
COORDINATES: similar to AA sequence:RefSeq:WP_018434607.1
GO:0004055 - argininosuccinate synthase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0006526 - arginine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016355392.1
COORDINATES: similar to AA sequence:RefSeq:WP_006397042.1
COORDINATES: similar to AA sequence:RefSeq:WP_017332728.1
COORDINATES: similar to AA sequence:RefSeq:WP_006481857.1
lysophospholipid acyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017332730.1
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0016780 - phosphotransferase activity, for other substituted phosphate groups [Evidence IEA]
GO:0008654 - phospholipid biosynthetic process [Evidence IEA]
CDP-alcohol phosphatidyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013958806.1
PDDEXK nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012403090.1
GO:0004089 - carbonate dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008923586.1
GO:0016836 - hydro-lyase activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008345922.1
GO:0005416 - amino acid:monoatomic cation symporter activity [Evidence IEA]
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008919007.1
COORDINATES: similar to AA sequence:RefSeq:WP_016348751.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000210 - NAD+ diphosphatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: similar to AA sequence:RefSeq:WP_011548950.1
GO:0005515 - protein binding [Evidence IEA]
GO:0006749 - glutathione metabolic process [Evidence IEA]
glutathione S-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007734753.1
COORDINATES: similar to AA sequence:RefSeq:WP_014973378.1
septal ring lytic transglycosylase RlpA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008348985.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0004659 - prenyltransferase activity [Evidence IEA]
GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]
phytoene/squalene synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020066309.1
COORDINATES: similar to AA sequence:RefSeq:WP_014252766.1
COORDINATES: similar to AA sequence:RefSeq:WP_016348706.1
COORDINATES: similar to AA sequence:RefSeq:WP_007745555.1
GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017773945.1
COORDINATES: similar to AA sequence:RefSeq:WP_017773946.1
GO:0102662 - malonate-semialdehyde dehydrogenase (acetylating, NAD+) activity [Evidence IEA]
CoA-acylating methylmalonate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_008919813.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016703 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014193896.1
transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008351239.1
zinc ribbon domain-containing protein YjdM
COORDINATES: similar to AA sequence:RefSeq:WP_008345325.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008345326.1
COORDINATES: similar to AA sequence:RefSeq:WP_008345327.1
COORDINATES: similar to AA sequence:RefSeq:WP_016346935.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013089198.1
COORDINATES: similar to AA sequence:RefSeq:WP_016348188.1
GO:0015293 - symporter activity [Evidence IEA]
bile acid:sodium symporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015603839.1
COORDINATES: similar to AA sequence:RefSeq:WP_012216891.1
COORDINATES: similar to AA sequence:RefSeq:WP_016346964.1
COORDINATES: similar to AA sequence:RefSeq:WP_008644328.1
COORDINATES: similar to AA sequence:RefSeq:WP_007733321.1
COORDINATES: similar to AA sequence:RefSeq:WP_017878477.1
COORDINATES: similar to AA sequence:RefSeq:WP_008347693.1
COORDINATES: similar to AA sequence:RefSeq:WP_016347902.1
COORDINATES: similar to AA sequence:RefSeq:WP_013518213.1
COORDINATES: similar to AA sequence:RefSeq:WP_014252676.1
glutathione S-transferase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013592079.1
COORDINATES: similar to AA sequence:RefSeq:WP_009893410.1
COORDINATES: similar to AA sequence:RefSeq:WP_016348592.1
COORDINATES: similar to AA sequence:RefSeq:WP_016348228.1
COORDINATES: similar to AA sequence:RefSeq:WP_007178162.1
COORDINATES: similar to AA sequence:RefSeq:WP_018422746.1
COORDINATES: similar to AA sequence:RefSeq:WP_013093866.1
COORDINATES: similar to AA sequence:RefSeq:WP_008347718.1
COORDINATES: similar to AA sequence:RefSeq:WP_018423261.1
GO:0003849 - 3-deoxy-7-phosphoheptulonate synthase activity [Evidence IEA]
GO:0009423 - chorismate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008347722.1
COORDINATES: similar to AA sequence:RefSeq:WP_006049382.1
low affinity iron permease family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014972069.1
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
thiamine pyrophosphate-requiring protein
COORDINATES: similar to AA sequence:RefSeq:WP_013342824.1
COORDINATES: similar to AA sequence:RefSeq:WP_016347925.1
COORDINATES: similar to AA sequence:RefSeq:WP_011809783.1
COORDINATES: similar to AA sequence:RefSeq:WP_013342827.1
COORDINATES: similar to AA sequence:RefSeq:WP_006051054.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008347737.1
phytanoyl-CoA dioxygenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008347740.1
COORDINATES: similar to AA sequence:RefSeq:WP_016347931.1
COORDINATES: similar to AA sequence:RefSeq:WP_016347934.1
COORDINATES: similar to AA sequence:RefSeq:WP_008346360.1
COORDINATES: similar to AA sequence:RefSeq:WP_014252658.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
putative DNA modification/repair radical SAM protein
COORDINATES: similar to AA sequence:RefSeq:WP_012433335.1
This protein belongs to the uracil DNA glycosylase superfamily, members of which act in excision repair of DNA. However, it belongs more specifically to UdgX branch, whose founding member was found to bind uracil in DNA (where it does not belong), without cleaving it, appears to promote DNA repair by a pathway involving RecA, rather than base excision.; This protein belongs to the uracil DNA glycosylase superfamily, members of which act in excision repair of DNA. However, it belongs more specifically to UdgX branch, whose founding member was found to bind uracil in DNA (where it does not belong), without cleaving it, appears to promote DNA repair by a pathway involving RecA, rather than base excision; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020068767.1
COORDINATES: similar to AA sequence:RefSeq:WP_016347938.1
COORDINATES: similar to AA sequence:RefSeq:WP_008347756.1
COORDINATES: similar to AA sequence:RefSeq:WP_016347944.1
COORDINATES: similar to AA sequence:RefSeq:WP_014252622.1
COORDINATES: similar to AA sequence:RefSeq:WP_014252621.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_008347772.1
COORDINATES: similar to AA sequence:RefSeq:WP_016347971.1
COORDINATES: similar to AA sequence:RefSeq:WP_016347972.1
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014252617.1
GO:0030246 - carbohydrate binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007581207.1
COORDINATES: similar to AA sequence:RefSeq:WP_006027108.1
COORDINATES: similar to AA sequence:RefSeq:WP_007739474.1
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016347166.1
COORDINATES: similar to AA sequence:RefSeq:WP_014252957.1
filamentous hemagglutinin N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011486958.1
GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012405078.1
COORDINATES: similar to AA sequence:RefSeq:WP_020655360.1
COORDINATES: similar to AA sequence:RefSeq:WP_015014729.1
CaiB/BaiF CoA-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014250932.1
COORDINATES: similar to AA sequence:RefSeq:WP_013540884.1
COORDINATES: similar to AA sequence:RefSeq:WP_020070326.1
COORDINATES: similar to AA sequence:RefSeq:WP_020070327.1
COORDINATES: similar to AA sequence:RefSeq:WP_018422165.1
COORDINATES: similar to AA sequence:RefSeq:WP_020067785.1
COORDINATES: similar to AA sequence:RefSeq:WP_013590741.1
COORDINATES: similar to AA sequence:RefSeq:WP_014972238.1
GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
DHA2 family efflux MFS transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012403779.1
COORDINATES: similar to AA sequence:RefSeq:WP_018434841.1
COORDINATES: similar to AA sequence:RefSeq:WP_008917289.1
COORDINATES: similar to AA sequence:RefSeq:WP_014252245.1
COORDINATES: similar to AA sequence:RefSeq:WP_007735414.1
GO:0004357 - glutamate-cysteine ligase activity [Evidence IEA]
GO:0042398 - cellular modified amino acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007745913.1
COORDINATES: similar to AA sequence:RefSeq:WP_013093537.1
with GsiBCD is involved in glutathione import; GsiA contains 2 ATP-binding domains; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
glutathione ABC transporter ATP-binding protein GsiA
COORDINATES: similar to AA sequence:RefSeq:WP_011491725.1
COORDINATES: similar to AA sequence:RefSeq:WP_006049788.1
This protein belongs to a clade of FMN-dependent monooxygenases, within a broader family of flavin-dependent oxidoreductases, the luciferase-like monooxygenase (LMM) family, some of whose members use coenzyme F420 rather than FMN; Derived by automated computational analysis using gene prediction method: Protein Homology.
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_008919255.1
COORDINATES: similar to AA sequence:RefSeq:WP_020831270.1
bifunctional diguanylate cyclase/phosphodiesterase
COORDINATES: similar to AA sequence:RefSeq:WP_008345437.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011659080.1
COORDINATES: similar to AA sequence:RefSeq:WP_014193723.1
GO:0016655 - oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011660660.1
Members of the family are the ATP-binding subunit of ABC transporters for substrates such as betaine, L-proline or other amino acids, choline, carnitine, etc. The substrate specificity is best determined from the substrate-binding subunit, rather than this subunit, as it interacts with the permease subunit and not with substrate directly; Derived by automated computational analysis using gene prediction method: Protein Homology.
glycine betaine/L-proline ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011660659.1
proline/glycine betaine ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_018432391.1
glycine betaine ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_020066002.1
GO:0004372 - glycine hydroxymethyltransferase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0070905 - serine binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0019264 - glycine biosynthetic process from serine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008922863.1
COORDINATES: similar to AA sequence:RefSeq:WP_007744989.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406034.1
COORDINATES: similar to AA sequence:RefSeq:WP_006406788.1
GO:0004735 - pyrroline-5-carboxylate reductase activity [Evidence IEA]
GO:0006561 - proline biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012406032.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406030.1
COORDINATES: protein motif:HMM:NF018894.2
GO:0035438 - cyclic-di-GMP binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014252613.1
COORDINATES: similar to AA sequence:RefSeq:WP_017329294.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013592127.1
GO:0043546 - molybdopterin cofactor binding [Evidence IEA]
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012426836.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008347794.1
COORDINATES: protein motif:HMM:NF023239.2
COORDINATES: similar to AA sequence:RefSeq:WP_014252574.1
COORDINATES: similar to AA sequence:RefSeq:WP_014252571.1
COORDINATES: similar to AA sequence:RefSeq:WP_019448540.1
circularly permuted type 2 ATP-grasp protein
COORDINATES: similar to AA sequence:RefSeq:WP_014252569.1
COORDINATES: similar to AA sequence:RefSeq:WP_007747265.1
COORDINATES: similar to AA sequence:RefSeq:WP_017774222.1
COORDINATES: similar to AA sequence:RefSeq:WP_012403775.1
COORDINATES: similar to AA sequence:RefSeq:WP_006415592.1
COORDINATES: similar to AA sequence:RefSeq:WP_008348023.1
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008333457.1
COORDINATES: similar to AA sequence:RefSeq:WP_008348025.1
COORDINATES: similar to AA sequence:RefSeq:WP_008348026.1
COORDINATES: similar to AA sequence:RefSeq:WP_016348179.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014252453.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008348172.1
GO:0008703 - 5-amino-6-(5-phosphoribosylamino)uracil reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007178636.1
COORDINATES: similar to AA sequence:RefSeq:WP_016347575.1
COORDINATES: similar to AA sequence:RefSeq:WP_008919012.1
COORDINATES: protein motif:HMM:NF008323.1
cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB
COORDINATES: similar to AA sequence:RefSeq:WP_020228309.1
cellulose synthase complex periplasmic endoglucanase BcsZ
COORDINATES: similar to AA sequence:RefSeq:WP_018418589.1
GO:0030244 - cellulose biosynthetic process [Evidence IEA]
cellulose synthase subunit BcsC-related outer membrane protein
COORDINATES: protein motif:HMM:NF022448.2
COORDINATES: similar to AA sequence:RefSeq:WP_011351695.1
GO:0090540 - bacterial cellulose biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014897318.1
GO:0016760 - cellulose synthase (UDP-forming) activity [Evidence IEA]; GO:0035438 - cyclic-di-GMP binding [Evidence IEA]
GO:0030244 - cellulose biosynthetic process [Evidence IEA]; GO:0006011 - UDP-glucose metabolic process [Evidence IEA]
UDP-forming cellulose synthase catalytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_004549777.1
GO:0005575 - cellular_component [Evidence IEA]
GO:0003674 - molecular_function [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011545169.1
COORDINATES: similar to AA sequence:RefSeq:WP_014895667.1
GO:0004629 - phospholipase C activity [Evidence IEA]
phospholipase C, phosphocholine-specific
COORDINATES: protein motif:HMM:NF019023.2
COORDINATES: protein motif:HMM:NF025056.2
COORDINATES: similar to AA sequence:RefSeq:WP_011812175.1
COORDINATES: protein motif:HMM:NF012377.2
GO:0071704 - organic substance metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012431903.1
COORDINATES: similar to AA sequence:RefSeq:WP_007179047.1
GO:0045226 - extracellular polysaccharide biosynthetic process [Evidence IEA]
polysaccharide biosynthesis tyrosine autokinase
COORDINATES: similar to AA sequence:RefSeq:WP_013591906.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004522824.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343450.1
COORDINATES: similar to AA sequence:RefSeq:WP_014193955.1
COORDINATES: similar to AA sequence:RefSeq:WP_014193960.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016348210.1
GO:0004139 - deoxyribose-phosphate aldolase activity [Evidence IEA]
GO:0009264 - deoxyribonucleotide catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014194002.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194003.1
GO:0016853 - isomerase activity [Evidence IEA]; GO:0048029 - monosaccharide binding [Evidence IEA]
GO:0005996 - monosaccharide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008348182.1
GO:0004747 - ribokinase activity [Evidence IEA]
GO:0019303 - D-ribose catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008348180.1
COORDINATES: similar to AA sequence:RefSeq:WP_007177294.1
autoinducer 2 ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_016348216.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194008.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194009.1
COORDINATES: similar to AA sequence:RefSeq:WP_014252196.1
COORDINATES: similar to AA sequence:RefSeq:WP_014252199.1
COORDINATES: similar to AA sequence:RefSeq:WP_012399446.1
COORDINATES: similar to AA sequence:RefSeq:WP_007177038.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_016348407.1
COORDINATES: similar to AA sequence:RefSeq:WP_018434405.1
GO:0055072 - iron ion homeostasis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006494604.1
COORDINATES: similar to AA sequence:RefSeq:WP_008348308.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016646 - oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013341814.1
COORDINATES: similar to AA sequence:RefSeq:WP_013590809.1
COORDINATES: similar to AA sequence:RefSeq:WP_007577367.1
COORDINATES: similar to AA sequence:RefSeq:WP_012404658.1
GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0009877 - nodulation [Evidence IEA]; GO:0009312 - oligosaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007731464.1
COORDINATES: similar to AA sequence:RefSeq:WP_012404656.1
COORDINATES: similar to AA sequence:RefSeq:WP_017777391.1
COORDINATES: similar to AA sequence:RefSeq:WP_011301931.1
3-deoxy-D-arabino-heptulosonate 7-phosphate synthase
COORDINATES: similar to AA sequence:RefSeq:WP_018432966.1
COORDINATES: similar to AA sequence:RefSeq:WP_014252424.1
COORDINATES: protein motif:HMM:NF012863.2
COORDINATES: similar to AA sequence:RefSeq:WP_011489125.1
COORDINATES: similar to AA sequence:RefSeq:WP_008346083.1
twin-arginine translocation signal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008346081.1
COORDINATES: similar to AA sequence:RefSeq:WP_014193836.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013587355.1
GO:0008808 - cardiolipin synthase activity [Evidence IEA]
GO:0032049 - cardiolipin biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008354136.1
COORDINATES: similar to AA sequence:RefSeq:WP_017328652.1
choline ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006396403.1
3-keto-5-aminohexanoate cleavage protein
COORDINATES: similar to AA sequence:RefSeq:WP_016355444.1
GO:0070403 - NAD+ binding [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008354130.1
COORDINATES: similar to AA sequence:RefSeq:WP_007748649.1
D-2-hydroxyacid dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014252850.1
COORDINATES: similar to AA sequence:RefSeq:WP_011487666.1
COORDINATES: similar to AA sequence:RefSeq:WP_012432453.1
COORDINATES: similar to AA sequence:RefSeq:WP_007583923.1
COORDINATES: similar to AA sequence:RefSeq:WP_008345394.1
COORDINATES: similar to AA sequence:RefSeq:WP_014250500.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017232981.1
COORDINATES: similar to AA sequence:RefSeq:WP_013698920.1
COORDINATES: similar to AA sequence:RefSeq:WP_006753975.1
COORDINATES: similar to AA sequence:RefSeq:WP_013089220.1
GO:0006835 - dicarboxylic acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020068382.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006397982.1
COORDINATES: similar to AA sequence:RefSeq:WP_006749778.1
COORDINATES: similar to AA sequence:RefSeq:WP_008918930.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018437894.1
COORDINATES: similar to AA sequence:RefSeq:WP_012405826.1
COORDINATES: similar to AA sequence:RefSeq:WP_013092387.1
COORDINATES: similar to AA sequence:RefSeq:WP_010812772.1
COORDINATES: similar to AA sequence:RefSeq:WP_011353704.1
GO:0004601 - peroxidase activity [Evidence IEA]
GO:0006979 - response to oxidative stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014193045.1
COORDINATES: similar to AA sequence:RefSeq:WP_014193046.1
COORDINATES: similar to AA sequence:RefSeq:WP_020067743.1
COORDINATES: similar to AA sequence:RefSeq:WP_014193048.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014193049.1
GO:0036361 - racemase activity, acting on amino acids and derivatives [Evidence IEA]
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
aspartate/glutamate racemase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007584464.1
COORDINATES: similar to AA sequence:RefSeq:WP_006049730.1
COORDINATES: similar to AA sequence:RefSeq:WP_014193052.1
GO:0046522 - S-methyl-5-thioribose kinase activity [Evidence IEA]
GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006049728.1
GO:0046523 - S-methyl-5-thioribose-1-phosphate isomerase activity [Evidence IEA]
S-methyl-5-thioribose-1-phosphate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_014193054.1
class II aldolase/adducin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007731725.1
COORDINATES: similar to AA sequence:RefSeq:WP_020067734.1
COORDINATES: similar to AA sequence:RefSeq:WP_008347468.1
COORDINATES: similar to AA sequence:RefSeq:WP_014193058.1
COORDINATES: similar to AA sequence:RefSeq:WP_014193059.1
GO:0004371 - glycerone kinase activity [Evidence IEA]
GO:0006071 - glycerol metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009770694.1
amino acid ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007177390.1
COORDINATES: similar to AA sequence:RefSeq:WP_013542655.1
COORDINATES: protein motif:HMM:TIGR02607.1
COORDINATES: similar to AA sequence:RefSeq:WP_014253215.1
COORDINATES: similar to AA sequence:RefSeq:WP_008345540.1
hybrid sensor histidine kinase/response regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013688885.1
COORDINATES: similar to AA sequence:RefSeq:WP_012346433.1
GO:0008233 - peptidase activity [Evidence IEA]; GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012433187.1
COORDINATES: similar to AA sequence:RefSeq:WP_013093434.1
GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012405858.1
GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO:0106141 - flavin prenyltransferase activity [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006046922.1
COORDINATES: similar to AA sequence:RefSeq:WP_013590309.1
COORDINATES: similar to AA sequence:RefSeq:WP_013590308.1
COORDINATES: similar to AA sequence:RefSeq:WP_013338225.1
COORDINATES: similar to AA sequence:RefSeq:WP_013590306.1
COORDINATES: similar to AA sequence:RefSeq:WP_014971887.1
COORDINATES: similar to AA sequence:RefSeq:WP_007583887.1
COORDINATES: similar to AA sequence:RefSeq:WP_013590303.1
COORDINATES: similar to AA sequence:RefSeq:WP_012367063.1
COORDINATES: similar to AA sequence:RefSeq:WP_018433587.1
COORDINATES: similar to AA sequence:RefSeq:WP_018314491.1
aldo/keto reductase family oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_013094286.1
alanine--glyoxylate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020070856.1
COORDINATES: similar to AA sequence:RefSeq:WP_008345322.1
COORDINATES: similar to AA sequence:RefSeq:WP_013088404.1
The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc.; The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016347169.1
COORDINATES: similar to AA sequence:RefSeq:WP_014193431.1
COORDINATES: similar to AA sequence:RefSeq:WP_011493101.1
GO:0015109 - chromate transmembrane transporter activity [Evidence IEA]
GO:0015703 - chromate transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: similar to AA sequence:RefSeq:WP_014193137.1
COORDINATES: similar to AA sequence:RefSeq:WP_015603347.1
COORDINATES: similar to AA sequence:RefSeq:WP_020071376.1
GO:0015803 - branched-chain amino acid transport [Evidence IEA]
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_014193140.1
COORDINATES: similar to AA sequence:RefSeq:WP_006497938.1
COORDINATES: similar to AA sequence:RefSeq:WP_008347862.1
COORDINATES: similar to AA sequence:RefSeq:WP_014193143.1
COORDINATES: similar to AA sequence:RefSeq:WP_008347864.1
COORDINATES: similar to AA sequence:RefSeq:WP_008345235.1
COORDINATES: similar to AA sequence:RefSeq:WP_014253227.1
COORDINATES: similar to AA sequence:RefSeq:WP_014253231.1
COORDINATES: similar to AA sequence:RefSeq:WP_016347366.1
GO:0050129 - N-formylglutamate deformylase activity [Evidence IEA]
GO:0019557 - histidine catabolic process to glutamate and formate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013689169.1
COORDINATES: similar to AA sequence:RefSeq:WP_016347364.1
COORDINATES: similar to AA sequence:RefSeq:WP_006752176.1
COORDINATES: similar to AA sequence:RefSeq:WP_004631827.1
COORDINATES: similar to AA sequence:RefSeq:WP_013689165.1
COORDINATES: similar to AA sequence:RefSeq:WP_013689164.1
COORDINATES: similar to AA sequence:RefSeq:WP_016346921.1
COORDINATES: similar to AA sequence:RefSeq:WP_020067670.1
COORDINATES: similar to AA sequence:RefSeq:WP_012401425.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
multicopper oxidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011517175.1
COORDINATES: similar to AA sequence:RefSeq:WP_013089546.1
transglycosylase SLT domain-containing protein