Mycolicibacillus parakoreensis strain DSM 45575 plasmid unnamed, complete sequence.
Mycolicibacillus parakoreensis (Mycobacterium parakoreense)
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycolicibacillus.
Complete Genome Sequences of 14 Nontuberculous Mycobacteria Type Strains
Microbiol Resour Announc 12 (2), e0121422 (2023)
Submitted (22-AUG-2022) Department of Mycobacterium Reference and Research, Research Institute of Tuberculosis, 3-1-24 Matsuyama, Kiyose, Tokyo 204-8533, Japan
Nucleotide sequence updated by submitter
Submitted (15-FEB-2022) Department of Mycobacterium reference and research, Research Institute of Tuberculosis, 3-1-24 matsuyama, kiyose, tokyo 204-8533, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nCP092366.2.\n\nOn Sep 15, 2022 this sequence version replaced NZ_CP092366.1.\nBacteria and source DNA available from German Collection of\nMicroorganisms and Cell Cultures (DSMZ).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Flye v. 2.9\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 134x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 06/25/2023 09:55:10\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,774\nCDSs (total) :: 3,719\nGenes (coding) :: 3,671\nCDSs (with protein) :: 3,671\nGenes (RNA) :: 55\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 3\nPseudo Genes (total) :: 48\nCDSs (without protein) :: 48\nPseudo Genes (ambiguous residues) :: 0 of 48\nPseudo Genes (frameshifted) :: 10 of 48\nPseudo Genes (incomplete) :: 41 of 48\nPseudo Genes (internal stop) :: 1 of 48\nPseudo Genes (multiple problems) :: 4 of 48\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Mycolicibacillus parakoreensis
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008264012.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF037368.2
COORDINATES: similar to AA sequence:RefSeq:WP_005149425.1
COORDINATES: similar to AA sequence:RefSeq:WP_015298110.1
COORDINATES: similar to AA sequence:RefSeq:WP_006680475.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005149445.1
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein