Azospirillum baldaniorum strain Sp245 plasmid Sp245_p04.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Azospirillaceae; Azospirillum.
Denitrification Functional Genes Identified in Mobile Genetic Elements in Azospirillum Denitrifiers
Submitted (23-JUN-2017) Biotechnology Institute, University of Minnesota, 140 Gortner Lab, 1449 Gortner Avenue, St. Paul, MN 55108, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP022256.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 20-MAR-2017\nAssembly Method :: HGAP4 v. MAR-2017\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 145.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/05/2023 05:32:19\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,990\nCDSs (total) :: 6,867\nGenes (coding) :: 6,773\nCDSs (with protein) :: 6,773\nGenes (RNA) :: 123\nrRNAs :: 9, 10, 10 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 10, 10 (5S, 16S, 23S)\ntRNAs :: 90\nncRNAs :: 4\nPseudo Genes (total) :: 94\nCDSs (without protein) :: 94\nPseudo Genes (ambiguous residues) :: 0 of 94\nPseudo Genes (frameshifted) :: 35 of 94\nPseudo Genes (incomplete) :: 73 of 94\nPseudo Genes (internal stop) :: 2 of 94\nPseudo Genes (multiple problems) :: 15 of 94\n##Genome-Annotation-Data-END##
COORDINATES: similar to AA sequence:RefSeq:WP_011391026.1
GO:0003824 - catalytic activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
NAD-dependent epimerase/dehydratase family protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF025072.2
COORDINATES: protein motif:HMM:NF015983.2
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024584.2
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024967.2
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012744.2
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013257.2
COORDINATES: protein motif:HMM:NF018669.2
GO:0008146 - sulfotransferase activity [Evidence IEA]
sulfotransferase family 2 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011387757.1
GO:0004476 - mannose-6-phosphate isomerase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
COORDINATES: protein motif:HMM:NF024831.2
COORDINATES: protein motif:HMM:NF016903.2
COORDINATES: protein motif:HMM:NF024880.2
COORDINATES: protein motif:HMM:NF021436.2
COORDINATES: similar to AA sequence:RefSeq:WP_017486541.1
COORDINATES: protein motif:HMM:NF016464.2
GO:0006486 - protein glycosylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: similar to AA sequence:RefSeq:WP_035683265.1
GO:0004781 - sulfate adenylyltransferase (ATP) activity [Evidence IEA]
GO:0019419 - sulfate reduction [Evidence IEA]
sulfate adenylyltransferase subunit CysD
COORDINATES: similar to AA sequence:RefSeq:WP_008190436.1
GO:0004020 - adenylylsulfate kinase activity [Evidence IEA]
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014190020.1
COORDINATES: similar to AA sequence:RefSeq:WP_012978551.1
COORDINATES: protein motif:HMM:TIGR00213.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803225.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014200332.1
COORDINATES: similar to AA sequence:RefSeq:WP_014200333.1
COORDINATES: similar to AA sequence:RefSeq:WP_014241991.1
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
14.3 : Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides
15.10 : Adaptations to atypical conditions
COORDINATES: similar to AA sequence:RefSeq:WP_015073921.1
COORDINATES: similar to AA sequence:RefSeq:WP_014190021.1
GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
UDP-glucose/GDP-mannose dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012978558.1
COORDINATES: similar to AA sequence:RefSeq:WP_012288627.1
UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase
COORDINATES: similar to AA sequence:RefSeq:WP_014190005.1
UDP-N-acetylglucosamine 4,6-dehydratase (inverting)
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_014246799.1
GO:0047443 - 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity [Evidence IEA]
4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase
COORDINATES: similar to AA sequence:RefSeq:WP_009238747.1
tripartite tricarboxylate transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_014246918.1
GO:0005215 - transporter activity [Evidence IEA]
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014189958.1
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF020893.2
COORDINATES: similar to AA sequence:RefSeq:WP_008946179.1
COORDINATES: similar to AA sequence:RefSeq:WP_011314253.1
molybdenum storage protein subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_011926287.1
COORDINATES: protein motif:HMM:NF024627.2
carbohydrate-binding domain-containing protein
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007353904.1
COORDINATES: similar to AA sequence:RefSeq:WP_005994081.1
COORDINATES: protein motif:HMM:NF014414.2
COORDINATES: similar to AA sequence:RefSeq:WP_014190071.1
GO:0008168 - methyltransferase activity [Evidence IEA]
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007002721.1
GO:0008483 - transaminase activity [Evidence IEA]
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_014626066.1
COORDINATES: protein motif:HMM:NF019846.2
COORDINATES: protein motif:HMM:NF024824.2
putative glycosyl transferase, family 2 (fragment)
conserved protein of unknown function, putative nucleotidyl transferase
COORDINATES: protein motif:HMM:NF016908.2
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007090494.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO:0003979 - UDP-glucose 6-dehydrogenase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014189992.1
bifunctional class I SAM-dependent methyltransferase/glycosyltransferase family 2 protein
COORDINATES: similar to AA sequence:RefSeq:WP_013653766.1
GO:0003978 - UDP-glucose 4-epimerase activity [Evidence IEA]
GO:0006012 - galactose metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012573.2
GO:0005509 - calcium ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019367388.1
COORDINATES: similar to AA sequence:RefSeq:WP_014248630.1
COORDINATES: protein motif:HMM:NF020137.2
GO:0005509 - calcium ion binding [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011809788.1
class II aldolase/adducin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010506708.1
NTP transferase domain-containing protein
COORDINATES: protein motif:HMM:NF016060.2
COORDINATES: similar to AA sequence:RefSeq:WP_008448861.1
COORDINATES: similar to AA sequence:RefSeq:WP_008448863.1
GO:0008081 - phosphoric diester hydrolase activity [Evidence IEA]
GO:0006629 - lipid metabolic process [Evidence IEA]
phosphatidylinositol-specific phospholipase C/glycerophosphodiester phosphodiesterase family protein
COORDINATES: protein motif:HMM:NF012697.2
putative Phosphoribulokinase/uridine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_008448867.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011511222.1
COORDINATES: similar to AA sequence:RefSeq:WP_008579007.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013503982.1
GO:0008446 - GDP-mannose 4,6-dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018061334.1
COORDINATES: similar to AA sequence:RefSeq:WP_015917194.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]
peptidase domain-containing ABC transporter
COORDINATES: similar to AA sequence:RefSeq:WP_004272150.1
GO:0030253 - protein secretion by the type I secretion system [Evidence IEA]
HlyD family type I secretion periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF019843.2
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF025054.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008943772.1
GO:0008879 - glucose-1-phosphate thymidylyltransferase activity [Evidence IEA]
GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
glucose-1-phosphate thymidylyltransferase RfbA
COORDINATES: similar to AA sequence:RefSeq:WP_008943769.1
GO:0008831 - dTDP-4-dehydrorhamnose reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012566037.1
GO:0008460 - dTDP-glucose 4,6-dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015951973.1
GO:0008830 - dTDP-4-dehydrorhamnose 3,5-epimerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020175438.1
COORDINATES: similar to AA sequence:RefSeq:WP_014200385.1
COORDINATES: similar to AA sequence:RefSeq:WP_020701313.1
COORDINATES: similar to AA sequence:RefSeq:WP_014860630.1
COORDINATES: similar to AA sequence:RefSeq:WP_017942175.1
COORDINATES: similar to AA sequence:RefSeq:WP_019645720.1
GO:0097367 - carbohydrate derivative binding [Evidence IEA]
GO:1901135 - carbohydrate derivative metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011383221.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]; GO:0005975 - carbohydrate metabolic process [Evidence IEA]
bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE
COORDINATES: similar to AA sequence:RefSeq:WP_012974796.1
GO:0008712 - ADP-glyceromanno-heptose 6-epimerase activity [Evidence IEA]
GO:0009244 - lipopolysaccharide core region biosynthetic process [Evidence IEA]
incomplete; too short partial abutting assembly gap; missing C-terminus; Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.