Arcobacter cloacae strain LMG 26153 plasmid pACLO, complete sequence.
Arcobacter cloacae (Pseudarcobacter cloacae)
Bacteria; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Arcobacteraceae; Arcobacter.
Complete genome sequencing of Campylobacter and Arcobacter type strains
Submitted (20-MAY-2020) Produce Safety and Microbiology, USDA, ARS, WRRC, 800 Buchanan St., Albany, CA 94710, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP053834.1.\nBacteria and source DNA available from Bacteria available from the\nLMG culture collection.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.6\nGenome Coverage :: 1020x\nSequencing Technology :: PacBio; Illumina HiSeq; 454\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/22/2023 16:33:14\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,841\nCDSs (total) :: 2,765\nGenes (coding) :: 2,753\nCDSs (with protein) :: 2,753\nGenes (RNA) :: 76\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 59\nncRNAs :: 2\nPseudo Genes (total) :: 12\nCDSs (without protein) :: 12\nPseudo Genes (ambiguous residues) :: 0 of 12\nPseudo Genes (frameshifted) :: 2 of 12\nPseudo Genes (incomplete) :: 6 of 12\nPseudo Genes (internal stop) :: 5 of 12\nPseudo Genes (multiple problems) :: 1 of 12\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF015736.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
DnaB-like helicase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF013235.2
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
COORDINATES: protein motif:HMM:NF014273.2
ParB N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF012257.2
GO:0030552 - cAMP binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011372635.1
GO:0015267 - channel activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011372976.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004511359.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013554769.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004511357.1
COORDINATES: protein motif:HMM:NF016103.2
COORDINATES: similar to AA sequence:RefSeq:WP_006079470.1
COORDINATES: protein motif:HMM:NF015863.2
PepSY-associated TM helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018135877.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF019421.2
COORDINATES: protein motif:HMM:NF024118.2
COORDINATES: protein motif:HMM:NF020419.2
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: protein motif:HMM:NF016724.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017186157.1
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: similar to AA sequence:RefSeq:WP_013135741.1
COORDINATES: similar to AA sequence:RefSeq:WP_012012530.1
GO:0007165 - signal transduction [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012012409.1
COORDINATES: similar to AA sequence:RefSeq:WP_012012498.1
COORDINATES: protein motif:HMM:NF012301.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014475517.1
COORDINATES: protein motif:HMM:NF013731.2
GO:0006935 - chemotaxis [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014473675.1
COORDINATES: similar to AA sequence:RefSeq:WP_014474337.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0005525 - GTP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013068.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - DNA transposition [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF033546.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013007038.1
COORDINATES: similar to AA sequence:RefSeq:WP_012856699.1
GO:0004521 - RNA endonuclease activity [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012856698.1
GO:0004520 - DNA endonuclease activity [Evidence IEA]
type I-B CRISPR-associated endonuclease Cas1b
COORDINATES: similar to AA sequence:RefSeq:WP_007157797.1
COORDINATES: similar to AA sequence:RefSeq:WP_018060815.1
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013835104.1
COORDINATES: protein motif:HMM:TIGR01587.1
GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011641199.1
GO:0003674 - molecular_function [Evidence IEA]
type I-B CRISPR-associated protein Cas5b
COORDINATES: similar to AA sequence:RefSeq:WP_012108280.1
COORDINATES: protein motif:HMM:NF024573.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014769133.1
GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
COORDINATES: protein motif:HMM:NF021375.2
COORDINATES: similar to AA sequence:RefSeq:WP_010871197.1
COORDINATES: similar to AA sequence:RefSeq:WP_014661550.1
CRISPR system precrRNA processing endoribonuclease RAMP protein Cas6
COORDINATES: protein motif:HMM:NF037066.2
COORDINATES: protein motif:HMM:NF015695.2
type III-A CRISPR-associated protein Csm2
COORDINATES: similar to AA sequence:RefSeq:WP_013451730.1
type III-A CRISPR-associated RAMP protein Csm3
COORDINATES: protein motif:HMM:NF015728.2
type III-A CRISPR-associated RAMP protein Csm5
COORDINATES: protein motif:HMM:NF013970.2
COORDINATES: protein motif:HMM:NF021006.2
type II toxin-antitoxin system HipA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_016059919.1
reverse transcriptase domain-containing protein
COORDINATES: protein motif:HMM:TIGR00287.1
GO:0004520 - DNA endonuclease activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01573.1
COORDINATES: protein motif:HMM:NF024895.2
COORDINATES: protein motif:HMM:NF024676.2
GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014468451.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024589.2
COORDINATES: protein motif:HMM:NF025338.2
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011371863.1
COORDINATES: similar to AA sequence:RefSeq:WP_018060556.1
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012012826.1
LapD/MoxY N-terminal periplasmic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014468725.1
transglutaminase-like cysteine peptidase
COORDINATES: protein motif:HMM:NF012422.2
COORDINATES: similar to AA sequence:RefSeq:WP_014474428.1
GO:0030253 - protein secretion by the type I secretion system [Evidence IEA]
HlyD family type I secretion periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014474429.1
COORDINATES: protein motif:HMM:TIGR01844.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014474432.1
COORDINATES: protein motif:HMM:NF012707.2
COORDINATES: protein motif:HMM:NF022135.2
COORDINATES: protein motif:HMM:TIGR01783.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008038535.1
heparan-alpha-glucosaminide N-acetyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: protein motif:HMM:NF019310.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004510897.1
COORDINATES: similar to AA sequence:RefSeq:WP_012147901.1
COORDINATES: similar to AA sequence:RefSeq:WP_004510895.1
COORDINATES: similar to AA sequence:RefSeq:WP_011138240.1
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012148132.1
COORDINATES: similar to AA sequence:RefSeq:WP_014469228.1
COORDINATES: similar to AA sequence:RefSeq:WP_004511235.1
COORDINATES: similar to AA sequence:RefSeq:WP_004511241.1
COORDINATES: similar to AA sequence:RefSeq:WP_014469234.1
COORDINATES: similar to AA sequence:RefSeq:WP_014473567.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004511246.1
COORDINATES: protein motif:HMM:NF019315.2
COORDINATES: similar to AA sequence:RefSeq:WP_004510865.1
COORDINATES: similar to AA sequence:RefSeq:WP_014468414.1
GO:0004333 - fumarate hydratase activity [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: protein motif:HMM:NF012801.2
COORDINATES: protein motif:HMM:NF014567.2
histidine kinase dimerization/phosphoacceptor domain -containing protein
COORDINATES: protein motif:HMM:NF013691.2
COORDINATES: similar to AA sequence:RefSeq:WP_004511210.1
COORDINATES: similar to AA sequence:RefSeq:WP_014474917.1
COORDINATES: similar to AA sequence:RefSeq:WP_013134238.1
GO:0004664 - prephenate dehydratase activity [Evidence IEA]
GO:0009094 - L-phenylalanine biosynthetic process [Evidence IEA]
prephenate dehydratase domain-containing protein
COORDINATES: protein motif:HMM:NF015509.2
COORDINATES: similar to AA sequence:RefSeq:WP_014469403.1
GO:0008677 - 2-dehydropantoate 2-reductase activity [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
GO:0015940 - pantothenate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014475143.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016389824.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003292102.1
GO:0016862 - intramolecular oxidoreductase activity, interconverting keto- and enol-groups [Evidence IEA]
GO:0006725 - cellular aromatic compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014475145.1
GO:0047437 - 4-oxalocrotonate decarboxylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010325238.1
GO:0008701 - 4-hydroxy-2-oxovalerate aldolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008250710.1
GO:0008774 - acetaldehyde dehydrogenase (acetylating) activity [Evidence IEA]
acetaldehyde dehydrogenase (acetylating)
COORDINATES: similar to AA sequence:RefSeq:WP_014475148.1
GO:0003824 - catalytic activity [Evidence IEA]
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012699539.1
GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
2-hydroxymuconic semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_014475150.1
COORDINATES: similar to AA sequence:RefSeq:WP_014475151.1
GO:0018577 - catechol 2,3-dioxygenase activity [Evidence IEA]
GO:0009712 - catechol-containing compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012339.2
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: protein motif:HMM:NF025120.2
COORDINATES: protein motif:HMM:TIGR03071.1
HipA N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014474838.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004252842.1
2Fe-2S iron-sulfur cluster binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014475160.1
GO:0018662 - phenol 2-monooxygenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014475161.1
COORDINATES: similar to AA sequence:RefSeq:WP_014475162.1
GO:0004497 - monooxygenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014395.2
COORDINATES: protein motif:HMM:NF017872.2
COORDINATES: similar to AA sequence:RefSeq:WP_014475168.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014474486.1
GO:0003862 - 3-isopropylmalate dehydrogenase activity [Evidence IEA]
GO:0009098 - leucine biosynthetic process [Evidence IEA]