Ralstonia mannitolilytica strain SN82F48 plasmid pRMAN01, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.
Genome Sequence of Ralstonia mannitolilytica
Submitted (27-JAN-2015) Lab Medicine, UCSF, 185 Berry Street, San Francisco, CA 94107, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP010801.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. v3.5\nSequencing Technology :: Oxford Nanopore; Illumina, Nextera\n mate-pair; Illumina, Nextera paired-end\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/22/2023 01:40:57\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,801\nCDSs (total) :: 4,742\nGenes (coding) :: 4,681\nCDSs (with protein) :: 4,681\nGenes (RNA) :: 59\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 3\nPseudo Genes (total) :: 61\nCDSs (without protein) :: 61\nPseudo Genes (ambiguous residues) :: 0 of 61\nPseudo Genes (frameshifted) :: 24 of 61\nPseudo Genes (incomplete) :: 46 of 61\nPseudo Genes (internal stop) :: 2 of 61\nPseudo Genes (multiple problems) :: 11 of 61\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_013700154.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612028.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF022224.2
COORDINATES: protein motif:HMM:NF019348.2
COORDINATES: protein motif:HMM:NF022792.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF014069.2
COORDINATES: protein motif:HMM:NF024108.2
TraM recognition domain-containing protein
COORDINATES: protein motif:HMM:NF013311.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:NF037161.2
COORDINATES: protein motif:HMM:NF017026.2
COORDINATES: protein motif:HMM:NF013828.2
COORDINATES: similar to AA sequence:RefSeq:WP_013516268.1
COORDINATES: similar to AA sequence:RefSeq:WP_017941447.1
COORDINATES: similar to AA sequence:RefSeq:WP_018310075.1
COORDINATES: similar to AA sequence:RefSeq:WP_009523931.1
COORDINATES: similar to AA sequence:RefSeq:WP_013516270.1
COORDINATES: similar to AA sequence:RefSeq:WP_013516269.1
COORDINATES: similar to AA sequence:RefSeq:WP_011230327.1
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013006691.1
COORDINATES: protein motif:HMM:NF012442.2
COORDINATES: similar to AA sequence:RefSeq:WP_006762299.1
COORDINATES: similar to AA sequence:RefSeq:WP_019719550.1
COORDINATES: similar to AA sequence:RefSeq:WP_020425327.1
COORDINATES: similar to AA sequence:RefSeq:WP_020205270.1
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_011229386.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020423909.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_020205273.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: similar to AA sequence:RefSeq:WP_004628518.1
COORDINATES: similar to AA sequence:RefSeq:WP_014618674.1
COORDINATES: similar to AA sequence:RefSeq:WP_019719543.1
COORDINATES: similar to AA sequence:RefSeq:WP_003276379.1
COORDINATES: similar to AA sequence:RefSeq:WP_018004510.1
COORDINATES: similar to AA sequence:RefSeq:WP_011514876.1
COORDINATES: similar to AA sequence:RefSeq:WP_019719539.1
COORDINATES: similar to AA sequence:RefSeq:WP_018309474.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004551139.1
COORDINATES: similar to AA sequence:RefSeq:WP_015447288.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019897068.1
COORDINATES: similar to AA sequence:RefSeq:WP_003100853.1
COORDINATES: similar to AA sequence:RefSeq:WP_003100856.1
COORDINATES: similar to AA sequence:RefSeq:WP_011809177.1
Uncharacterized conserved protein, contains double-stranded beta-helix domain
COORDINATES: similar to AA sequence:RefSeq:WP_003465043.1
COORDINATES: similar to AA sequence:RefSeq:WP_003154411.1
COORDINATES: similar to AA sequence:RefSeq:WP_008932165.1
COORDINATES: similar to AA sequence:RefSeq:WP_001247892.1
COORDINATES: similar to AA sequence:RefSeq:WP_003830784.1
COORDINATES: similar to AA sequence:RefSeq:WP_013521184.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
carboxymuconolactone decarboxylase family protein
COORDINATES: protein motif:HMM:NF028004.2
COORDINATES: similar to AA sequence:RefSeq:WP_011287058.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007936959.1
COORDINATES: similar to AA sequence:RefSeq:WP_004637342.1
COORDINATES: similar to AA sequence:RefSeq:WP_002942118.1
COORDINATES: similar to AA sequence:RefSeq:WP_004637345.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_001734787.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004637351.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012430353.1
Tn3 family transposase post-transcriptional regulator TnpC
COORDINATES: similar to AA sequence:RefSeq:WP_004637366.1
Acetylglutamate semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_018925633.1
GO:0003942 - N-acetyl-gamma-glutamyl-phosphate reductase activity [Evidence IEA]
GO:0006592 - ornithine biosynthetic process [Evidence IEA]
N-acetyl-gamma-glutamyl-phosphate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_020308561.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003465024.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
Transposase and inactivated derivatives, IS30 family
COORDINATES: similar to AA sequence:RefSeq:WP_011544423.1
COORDINATES: protein motif:HMM:NF012245.2
HAMP domain-containing methyl-accepting chemotaxis protein
COORDINATES: similar to AA sequence:RefSeq:WP_018004567.1
COORDINATES: similar to AA sequence:RefSeq:WP_004536325.1
COORDINATES: similar to AA sequence:RefSeq:WP_016836424.1
COORDINATES: similar to AA sequence:RefSeq:WP_018442746.1
GO:0018784 - (S)-2-haloacid dehalogenase activity [Evidence IEA]
GO:0006805 - xenobiotic metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009338382.1
COORDINATES: protein motif:HMM:NF016244.2
COORDINATES: similar to AA sequence:RefSeq:WP_012427022.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma 54-interacting transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014834018.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558120.1
Tn3-like element IS1071 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_000147566.1
COORDINATES: similar to AA sequence:RefSeq:WP_003132006.1
COORDINATES: similar to AA sequence:RefSeq:WP_003132004.1
COORDINATES: similar to AA sequence:RefSeq:WP_001277466.1
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013722692.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:YP_005229640.1
GO:0045340 - mercury ion binding [Evidence IEA]
mercury resistance system periplasmic binding protein MerP
COORDINATES: similar to AA sequence:RefSeq:YP_005229639.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229638.1
mercury resistance transcriptional regulator MerR
COORDINATES: similar to AA sequence:RefSeq:WP_013206815.1
COORDINATES: similar to AA sequence:RefSeq:WP_006762363.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354506.1
COORDINATES: protein motif:HMM:NF013427.2
TraR/DksA family transcriptional regulator
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: protein motif:HMM:NF016491.2
GO:0030255 - protein secretion by the type IV secretion system [Evidence IEA]
COORDINATES: protein motif:HMM:NF016238.2
COORDINATES: protein motif:HMM:NF015487.2
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: protein motif:HMM:NF015688.2
COORDINATES: protein motif:HMM:NF022136.2
toxin co-regulated pilus biosynthesis Q family protein
COORDINATES: protein motif:HMM:NF012485.2
GO:0019867 - outer membrane [Evidence IEA]
GO:0009297 - pilus assembly [Evidence IEA]
secretin N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF018562.2
COORDINATES: protein motif:HMM:TIGR03021.1
COORDINATES: similar to AA sequence:RefSeq:WP_004636268.1
type II secretion system F family protein
COORDINATES: protein motif:HMM:NF016785.2
shufflon system plasmid conjugative transfer pilus tip adhesin PilV
COORDINATES: similar to AA sequence:RefSeq:WP_012367215.1
COORDINATES: protein motif:HMM:NF016408.2
COORDINATES: protein motif:HMM:NF019604.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025602.2
COORDINATES: protein motif:HMM:NF013395.2
COORDINATES: similar to AA sequence:RefSeq:WP_008645358.1
COORDINATES: protein motif:HMM:NF015102.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]
DNA-directed RNA polymerase subunit alpha C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011798656.1
COORDINATES: protein motif:HMM:NF016874.2
COORDINATES: similar to AA sequence:RefSeq:WP_012430959.1
COORDINATES: similar to AA sequence:RefSeq:WP_009901192.1
COORDINATES: similar to AA sequence:RefSeq:WP_012251226.1
COORDINATES: similar to AA sequence:RefSeq:WP_007582524.1
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_024542051.1
IS1595-like element ISRama1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_011831469.1
COORDINATES: similar to AA sequence:RefSeq:WP_012590326.1
COORDINATES: similar to AA sequence:RefSeq:WP_004636881.1
COORDINATES: similar to AA sequence:RefSeq:WP_015887492.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012356952.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_008649488.1
COORDINATES: similar to AA sequence:RefSeq:WP_009207754.1
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_013699799.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242029.1
COORDINATES: protein motif:HMM:TIGR01448.1
GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018122.2
COORDINATES: similar to AA sequence:RefSeq:WP_018315042.1
COORDINATES: protein motif:HMM:TIGR03033.1
COORDINATES: similar to AA sequence:RefSeq:WP_018913908.1
COORDINATES: protein motif:HMM:NF020387.2
COORDINATES: protein motif:HMM:NF012234.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: protein motif:HMM:NF024755.2