Vibrio tubiashii ATCC 19109 plasmid p48, complete sequence.
Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio oreintalis group.
Complete Genome Sequence of the Larval Shellfish Pathogen Vibrio tubiashii Type Strain ATCC 19109
Submitted (28-AUG-2014) U.S. Meat Animal Research Center, U.S. Department of Agriculture, P.O. BOX 166, Clay Center, Nebraska 68933, U.S.A
REFSEQ INFORMATION: The reference sequence is identical to\nCP009359.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT Analysis Server v. v2.1.0; Celera\n Assembler v. 8.1; Geneious v. 7.1.5\nGenome Coverage :: 20x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/18/2022 14:12:56\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,150\nCDSs (total) :: 4,998\nGenes (coding) :: 4,966\nCDSs (with protein) :: 4,966\nGenes (RNA) :: 152\nrRNAs :: 11, 10, 10 (5S, 16S, 23S)\ncomplete rRNAs :: 11, 10, 10 (5S, 16S, 23S)\ntRNAs :: 117\nncRNAs :: 4\nPseudo Genes (total) :: 32\nCDSs (without protein) :: 32\nPseudo Genes (ambiguous residues) :: 0 of 32\nPseudo Genes (frameshifted) :: 9 of 32\nPseudo Genes (incomplete) :: 24 of 32\nPseudo Genes (internal stop) :: 8 of 32\nPseudo Genes (multiple problems) :: 7 of 32\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_004745287.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004745288.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745289.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745292.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745295.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745296.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_004745298.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745299.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745301.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745302.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004745304.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004745306.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745307.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745309.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745310.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745311.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745313.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745315.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745317.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745318.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_004745321.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745323.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_006714532.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745328.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745330.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004745331.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004745333.1
COORDINATES: similar to AA sequence:RefSeq:WP_016786536.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745228.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745230.1
COORDINATES: protein motif:HMM:NF019608.2
COORDINATES: similar to AA sequence:RefSeq:WP_004745233.1
VirB4 family type IV secretion system protein
COORDINATES: protein motif:HMM:NF016957.2
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_004745237.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745239.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745240.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745243.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745246.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745247.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745252.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745254.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745257.1
COORDINATES: similar to AA sequence:RefSeq:WP_006073963.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745260.1
COORDINATES: similar to AA sequence:RefSeq:WP_017789123.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745265.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745268.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745270.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745271.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745273.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745276.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745279.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745281.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745284.1
COORDINATES: similar to AA sequence:RefSeq:WP_004745286.1