Vibrio tubiashii ATCC 19109 plasmid p57, complete sequence.
Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio oreintalis group.
Complete Genome Sequence of the Larval Shellfish Pathogen Vibrio tubiashii Type Strain ATCC 19109
Submitted (28-AUG-2014) U.S. Meat Animal Research Center, U.S. Department of Agriculture, P.O. BOX 166, Clay Center, Nebraska 68933, U.S.A
REFSEQ INFORMATION: The reference sequence is identical to\nCP009358.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT Analysis Server v. v2.1.0; Celera\n Assembler v. 8.1; Geneious v. 7.1.5\nGenome Coverage :: 20x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/18/2022 14:12:56\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,150\nCDSs (total) :: 4,998\nGenes (coding) :: 4,966\nCDSs (with protein) :: 4,966\nGenes (RNA) :: 152\nrRNAs :: 11, 10, 10 (5S, 16S, 23S)\ncomplete rRNAs :: 11, 10, 10 (5S, 16S, 23S)\ntRNAs :: 117\nncRNAs :: 4\nPseudo Genes (total) :: 32\nCDSs (without protein) :: 32\nPseudo Genes (ambiguous residues) :: 0 of 32\nPseudo Genes (frameshifted) :: 9 of 32\nPseudo Genes (incomplete) :: 24 of 32\nPseudo Genes (internal stop) :: 8 of 32\nPseudo Genes (multiple problems) :: 7 of 32\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_004744714.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004744715.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_004744716.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744717.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744718.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744719.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744720.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744721.1
COORDINATES: protein motif:HMM:NF025438.2
COORDINATES: similar to AA sequence:RefSeq:WP_004744723.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744724.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744726.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004744727.1
COORDINATES: protein motif:HMM:TIGR02760.1
conjugative transfer relaxase/helicase TraI
COORDINATES: similar to AA sequence:RefSeq:WP_004744729.1
COORDINATES: similar to AA sequence:RefSeq:WP_011081599.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_004744657.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744658.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744659.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744660.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744661.1
conjugal transfer mating pair stabilization protein TraG
COORDINATES: similar to AA sequence:RefSeq:WP_004744662.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744663.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744664.1
type-F conjugative transfer system pilin assembly protein TraF
COORDINATES: similar to AA sequence:RefSeq:WP_004744665.1
type-F conjugative transfer system mating-pair stabilization protein TraN
COORDINATES: similar to AA sequence:RefSeq:WP_004744666.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_004744667.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744668.1
conjugal transfer pilus assembly protein TraU
COORDINATES: similar to AA sequence:RefSeq:WP_004744669.1
COORDINATES: similar to AA sequence:RefSeq:WP_016790715.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_004744671.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744672.1
type IV conjugative transfer system lipoprotein TraV
COORDINATES: similar to AA sequence:RefSeq:WP_004744673.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744674.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744675.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_004744676.1
type IV conjugative transfer system protein TraE
COORDINATES: similar to AA sequence:RefSeq:WP_004744677.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_004744678.1
type IV conjugative transfer system pilin TraA
COORDINATES: similar to AA sequence:RefSeq:WP_004744679.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744680.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744681.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744682.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744684.1
COORDINATES: similar to AA sequence:RefSeq:WP_011149036.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744686.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744688.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744689.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744690.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_019365280.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744692.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744693.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_004744695.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744696.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744697.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744698.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744699.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744700.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744702.1
COORDINATES: similar to AA sequence:RefSeq:WP_006712418.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744704.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744706.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744708.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744710.1
COORDINATES: similar to AA sequence:RefSeq:WP_002047200.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744712.1
COORDINATES: similar to AA sequence:RefSeq:WP_004744713.1