Vibrio tubiashii ATCC 19109 plasmid p123, complete sequence.
Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio oreintalis group.
Complete Genome Sequence of the Larval Shellfish Pathogen Vibrio tubiashii Type Strain ATCC 19109
Submitted (28-AUG-2014) U.S. Meat Animal Research Center, U.S. Department of Agriculture, P.O. BOX 166, Clay Center, Nebraska 68933, U.S.A
REFSEQ INFORMATION: The reference sequence is identical to\nCP009357.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT Analysis Server v. v2.1.0; Celera\n Assembler v. 8.1; Geneious v. 7.1.5\nGenome Coverage :: 20x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/18/2022 14:12:56\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,150\nCDSs (total) :: 4,998\nGenes (coding) :: 4,966\nCDSs (with protein) :: 4,966\nGenes (RNA) :: 152\nrRNAs :: 11, 10, 10 (5S, 16S, 23S)\ncomplete rRNAs :: 11, 10, 10 (5S, 16S, 23S)\ntRNAs :: 117\nncRNAs :: 4\nPseudo Genes (total) :: 32\nCDSs (without protein) :: 32\nPseudo Genes (ambiguous residues) :: 0 of 32\nPseudo Genes (frameshifted) :: 9 of 32\nPseudo Genes (incomplete) :: 24 of 32\nPseudo Genes (internal stop) :: 8 of 32\nPseudo Genes (multiple problems) :: 7 of 32\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_011783535.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_007645644.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011783537.1
STY4526/YPO1902 family pathogenicity island replication protein
COORDINATES: similar to AA sequence:RefSeq:WP_011783538.1
TIGR03761 family integrating conjugative element protein
COORDINATES: similar to AA sequence:RefSeq:WP_011783539.1
COORDINATES: similar to AA sequence:RefSeq:WP_011783540.1
PilL N-terminal domain-containing protein
uroporphyrinogen-III C-methyltransferase
COORDINATES: protein motif:HMM:TIGR03759.1
GO:0005575 - cellular_component [Evidence IEA]
GO:0003674 - molecular_function [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
TIGR03759 family integrating conjugative element protein
COORDINATES: similar to AA sequence:RefSeq:WP_011783543.1
transglycosylase SLT domain-containing protein
COORDINATES: protein motif:HMM:NF022523.2
COORDINATES: similar to AA sequence:RefSeq:WP_004181875.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_011783546.1
GO:0005886 - plasma membrane [Evidence IEA]
TIGR03747 family integrating conjugative element membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_011783548.1
RAQPRD family integrative conjugative element protein
COORDINATES: protein motif:HMM:NF023090.2
COORDINATES: similar to AA sequence:RefSeq:WP_008250722.1
TIGR03745 family integrating conjugative element membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_011783550.1
TIGR03750 family conjugal transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_011783551.1
TIGR03746 family integrating conjugative element protein
COORDINATES: similar to AA sequence:RefSeq:WP_008250729.1
TIGR03749 family integrating conjugative element protein
COORDINATES: similar to AA sequence:RefSeq:WP_011783553.1
TIGR03752 family integrating conjugative element protein
COORDINATES: protein motif:HMM:TIGR03751.1
TIGR03751 family conjugal transfer lipoprotein
COORDINATES: similar to AA sequence:RefSeq:WP_011783555.1
COORDINATES: protein motif:HMM:NF019152.2
COORDINATES: similar to AA sequence:RefSeq:WP_011783557.1
TIGR03756 family integrating conjugative element protein
COORDINATES: similar to AA sequence:RefSeq:WP_011783558.1
COORDINATES: similar to AA sequence:RefSeq:WP_011783560.1
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018274860.1
COORDINATES: similar to AA sequence:RefSeq:WP_016060068.1
COORDINATES: protein motif:HMM:NF025085.2
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: similar to AA sequence:RefSeq:WP_011783395.1
COORDINATES: similar to AA sequence:RefSeq:WP_011783396.1
COORDINATES: protein motif:HMM:TIGR00621.2
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014575758.1
COORDINATES: similar to AA sequence:RefSeq:WP_014575759.1
COORDINATES: similar to AA sequence:RefSeq:WP_014575760.1
GO:0006259 - DNA metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011783426.1
COORDINATES: similar to AA sequence:RefSeq:WP_011783427.1
COORDINATES: similar to AA sequence:RefSeq:WP_011783429.1
COORDINATES: similar to AA sequence:RefSeq:WP_008250787.1
COORDINATES: similar to AA sequence:RefSeq:WP_011783431.1
COORDINATES: similar to AA sequence:RefSeq:WP_011783432.1
COORDINATES: similar to AA sequence:RefSeq:WP_013141572.1
COORDINATES: similar to AA sequence:RefSeq:WP_020405271.1
COORDINATES: similar to AA sequence:RefSeq:WP_008169762.1
COORDINATES: similar to AA sequence:RefSeq:WP_011783438.1
COORDINATES: similar to AA sequence:RefSeq:WP_011783439.1
COORDINATES: protein motif:HMM:NF024853.2
COORDINATES: similar to AA sequence:RefSeq:WP_005264236.1
COORDINATES: similar to AA sequence:RefSeq:WP_004781050.1
COORDINATES: similar to AA sequence:RefSeq:WP_004758930.1
COORDINATES: similar to AA sequence:RefSeq:WP_019383579.1
COORDINATES: similar to AA sequence:RefSeq:WP_008250991.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
BREX-1 system adenine-specific DNA-methyltransferase PglX
COORDINATES: similar to AA sequence:RefSeq:WP_001052669.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004811060.1
protease Lon-related BREX system protein BrxL
COORDINATES: similar to AA sequence:RefSeq:WP_020208902.1
COORDINATES: similar to AA sequence:RefSeq:WP_020208903.1
COORDINATES: similar to AA sequence:RefSeq:WP_008251008.1
COORDINATES: similar to AA sequence:RefSeq:WP_004962504.1
TM0106 family RecB-like putative nuclease
COORDINATES: similar to AA sequence:RefSeq:WP_013705714.1
COORDINATES: similar to AA sequence:RefSeq:WP_011783486.1
COORDINATES: similar to AA sequence:RefSeq:WP_018404043.1
COORDINATES: protein motif:HMM:NF012534.2
GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF018381.2
COORDINATES: similar to AA sequence:RefSeq:WP_006991878.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007970353.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008929972.1
COORDINATES: similar to AA sequence:RefSeq:WP_001043260.1
sulfonamide-resistant dihydropteroate synthase Sul2
COORDINATES: similar to AA sequence:RefSeq:WP_008891390.1
catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011408759.1
COORDINATES: similar to AA sequence:RefSeq:WP_004743243.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_016916348.1
COORDINATES: similar to AA sequence:RefSeq:WP_013333057.1
COORDINATES: similar to AA sequence:RefSeq:WP_012850356.1
COORDINATES: similar to AA sequence:RefSeq:WP_013333056.1
COORDINATES: similar to AA sequence:RefSeq:WP_000480972.1
aminoglycoside O-phosphotransferase APH(6)-Id
COORDINATES: similar to AA sequence:RefSeq:WP_010890156.1
aminoglycoside O-phosphotransferase APH(3'')-Ib
COORDINATES: similar to AA sequence:RefSeq:WP_002209449.1
GO:0006402 - mRNA catabolic process [Evidence IEA]; GO:0006109 - regulation of carbohydrate metabolic process [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011899296.1
COORDINATES: similar to AA sequence:RefSeq:WP_010448813.1
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: protein motif:HMM:NF025447.2
COORDINATES: protein motif:HMM:NF023168.2
hybrid sensor histidine kinase/response regulator
COORDINATES: similar to AA sequence:RefSeq:WP_020406832.1
COORDINATES: similar to AA sequence:RefSeq:WP_011783532.1
COORDINATES: similar to AA sequence:RefSeq:WP_011783533.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
RepB family plasmid replication initiator protein
COORDINATES: similar to AA sequence:RefSeq:WP_020208819.1