Chlamydia phage Chp2, complete genome.
type: Entry
definition: Chlamydia phage Chp2, complete genome.
sequence version: NC_002194.1
sequence date: 2018-08-13
sequence: sequence
division: PHG
label: NC_002194.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA485481
keyword: RefSeq
source: Chlamydia phage 2
organism: Chlamydia phage 2
taxonomy: Viruses; ssDNA viruses; Microviridae; Gokushovirinae; Chlamydiamicrovirus.
reference: 1
references: 10729119
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence was derived from AJ270057.\nOn Mar 28, 2016 this sequence version replaced NC_008355.1.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000353
sequence length: 4563
topology: circular
so has quality: SO_0000988
location: 1..4563
location: region:1-4563:1
RO_0002162: 105154

NC_002194
type: RefSeq
SIO_000068: refseq

PRJNA485481
type: BioProject
SIO_000068: bioproject

1
title: Molecular characterization of a bacteriophage (Chp2) from chlamydia psittaci
author: Liu, B.L.
author: Everson, J.S.
author: Fane, B.
author: Giannikopoulou, P.
author: Vretou, E.
author: Lambden, P.R.
author: Clarke, I.N.
journal: J. Virol.
volume: 74
issue: 8
pages: 3464-3469
year: 2000
pubmed: 10729119

10729119
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (01-AUG-2000) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Liu, B.
journal: Submitted (30-SEP-1999) Liu B., Division of Cell and Molecular Medicine, University of Southampton, South Academic Block, Southampton General Hospital, Tremona Road, Southampton, Hampshire, SO16 6YD, UNITED KINGDOM

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4563:1
position: 4563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4563:1:source
so part of: sequence
organism: Chlamydia phage 2
mol type: genomic DNA
host: Chlamydia psittaci

105154
type: Taxonomy
SIO_000068: taxonomy

Ch-2p1
type: Gene
subclass of: SO_0000704
RO_0002162: 105154
gene: VP1
locus tag: Ch-2p1
so part of: sequence
location: 1..1698
location: region:1-1698:1
so has part: feature:1-1698:1:exon
subclass of: SO_0000010

1262641
type: Gene
SIO_000068: ncbigene

position:1698:1
position: 1698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-1698:1:exon

Ch-2p1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 105154
gene: VP1
locus tag: Ch-2p1
codon start: 1
transl table: 11
product: structural protein
translation: MVRNRRLPSVMSHSFAQVPSARIQRSSFDRSCGLKTTFDAGYLIPIFCDEVLPGDTFSLKEAFLARMATPIFPLMDNLRLDTQYFFVPLRLLWSNFQKFCGEQDNPDDSTDFLTPILTAPAGGFTEGSIHDYLGLPTKVAGVQCVAFWHRAYNLIWNQYYRDENIQESVEVQMGDTTTDEVNNYTLLKRGKRYDYFTSCLPWPQKGPAVTIGVGGKAPIEGLYMNVNSSNPVGKFVLDSQSTPRVLQDLQGNKLSGIAAYNQTGKHVYVNSAWYTVTPQSEPAATLENGNYYTTQKPQIYADLGATSPVTINSLREAFQLQKLYERDARGGTRYIEIIRSHFNVQSPDARLQRAEYLGGSSTPVNISPIPQTSSTDSTSPQGNLAAYGTAIGSKRVFTKSFTEHGVILGLASVRADLNYQQGLDRMWSRRTRWDFYWPALSHLGEQAVLNKEIYCQGPSVKNSGGEIVDDQVFGYQERFAEYRYKTSKITGKFRSNATSSLDSWHLAQEFENLPTLSPEFIEENPPMDRVLAVSTEPDFLLDGWFSLRCARPMPVYSVPGFIDHF
SIO_010081: Ch-2p1
subclass of: SO_0000673
so part of: Ch-2p1
location: 1..1698
location: region:1-1698:1
so has part: feature:1-1698:1:exon

NP_054647.1
type: Protein
SIO_000068: ncbiprotein

Q9MBU6
type: GOA
SIO_000068: goa

Q9MBU6
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:1-1698:1:exon

Ch-2p8
type: Gene
subclass of: SO_0000704
RO_0002162: 105154
locus tag: Ch-2p8
so part of: sequence
location: 1406..1504
location: region:1406-1504:1
so has part: feature:1406-1504:1:exon
subclass of: SO_0000010

7564752
type: Gene
SIO_000068: ncbigene

position:1406:1
position: 1406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1504:1
position: 1504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1406-1504:1:exon

Ch-2p8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 105154
locus tag: Ch-2p8
note: ORF7
codon start: 1
transl table: 11
product: nonstructural protein
translation: MTKSLDIRRDLRSIAIRLRKLPASSDQMLQVL
SIO_010081: Ch-2p8
subclass of: SO_0000673
so part of: Ch-2p8
location: 1406..1504
location: region:1406-1504:1
so has part: feature:1406-1504:1:exon

NP_054648.1
type: Protein
SIO_000068: ncbiprotein

Q9MBU5
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:1406-1504:1:exon

Ch-2p2
type: Gene
subclass of: SO_0000704
RO_0002162: 105154
locus tag: Ch-2p2
so part of: sequence
location: 1791..1949
location: region:1791-1949:1
so has part: feature:1791-1949:1:exon
subclass of: SO_0000010

1262639
type: Gene
SIO_000068: ncbigene

position:1791:1
position: 1791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1949:1
position: 1949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1791-1949:1:exon

Ch-2p2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 105154
locus tag: Ch-2p2
note: ORF6
codon start: 1
transl table: 11
product: nonstructural protein
translation: MWRVYESRTTYEYSRFSSFWSCPRIILSPWNSFWSFRISWRTETKCDCEANC
SIO_010081: Ch-2p2
subclass of: SO_0000673
so part of: Ch-2p2
location: 1791..1949
location: region:1791-1949:1
so has part: feature:1791-1949:1:exon

NP_054649.1
type: Protein
SIO_000068: ncbiprotein

Q9MBU4
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:1791-1949:1:exon

Ch-2p3
type: Gene
subclass of: SO_0000704
RO_0002162: 105154
gene: VP2
locus tag: Ch-2p3
so part of: sequence
location: 1804..2364
location: region:1804-2364:1
so has part: feature:1804-2364:1:exon
subclass of: SO_0000010

1262640
type: Gene
SIO_000068: ncbigene

position:1804:1
position: 1804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2364:1
position: 2364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1804-2364:1:exon

Ch-2p3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 105154
gene: VP2
locus tag: Ch-2p3
codon start: 1
transl table: 11
product: structural protein
translation: MNPEQLTNTLGSAVSGVAQGLSFLPGIASGVLGYLGAQKQNATAKQIAREQMAFQERMSNTAYQRAMEDMKKAGLNPMLAFSKGGASSPAGASWSPNNPVESAMNSGLAVQRLTYERKKMQAELQNLREQNRLIRNQAIREGYLAERDKYMRIAGVPVATEMLDRTSGLLSSSAKAFKNLFSRKGR
SIO_010081: Ch-2p3
subclass of: SO_0000673
so part of: Ch-2p3
location: 1804..2364
location: region:1804-2364:1
so has part: feature:1804-2364:1:exon

NP_054650.1
type: Protein
SIO_000068: ncbiprotein

Q9MBU3
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:1804-2364:1:exon

Ch-2p4
type: Gene
subclass of: SO_0000704
RO_0002162: 105154
gene: VP3
locus tag: Ch-2p4
so part of: sequence
location: 2365..2811
location: region:2365-2811:1
so has part: feature:2365-2811:1:exon
subclass of: SO_0000010

1262638
type: Gene
SIO_000068: ncbigene

position:2365:1
position: 2365
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2811:1
position: 2811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2365-2811:1:exon

Ch-2p4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 105154
gene: VP3
locus tag: Ch-2p4
codon start: 1
transl table: 11
product: structural protein
translation: MFKSAYSEKKSVKMKFTQKSLTQQHNKDECDINNIVAKLNATGVLEHVERRSPRYMDCMDPIEYSEALNVVIEAQEQFDSLPAKVRERFGNDPEAMLDFLSREENYEEAKALGFVYEDGTSGAPQTFFEAGPKDDQNVANQEPGLAQK
SIO_010081: Ch-2p4
subclass of: SO_0000673
so part of: Ch-2p4
location: 2365..2811
location: region:2365-2811:1
so has part: feature:2365-2811:1:exon

NP_054651.1
type: Protein
SIO_000068: ncbiprotein

Q9MBU2
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:2365-2811:1:exon

Ch-2p5
type: Gene
subclass of: SO_0000704
RO_0002162: 105154
locus tag: Ch-2p5
so part of: sequence
location: 3010..3144
location: region:3010-3144:1
so has part: feature:3010-3144:1:exon
subclass of: SO_0000010

1262636
type: Gene
SIO_000068: ncbigene

position:3010:1
position: 3010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3144:1
position: 3144
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3010-3144:1:exon

Ch-2p5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 105154
locus tag: Ch-2p5
note: ORF8
codon start: 1
transl table: 11
product: nonstructural protein
translation: MRLKMARRRYRLPRRRSRRLFSRTALRMHPRNRLRRIMRGGIRF
SIO_010081: Ch-2p5
subclass of: SO_0000673
so part of: Ch-2p5
location: 3010..3144
location: region:3010-3144:1
so has part: feature:3010-3144:1:exon

NP_054652.1
type: Protein
SIO_000068: ncbiprotein

Q9MBU1
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:3010-3144:1:exon

Ch-2p6
type: Gene
subclass of: SO_0000704
RO_0002162: 105154
locus tag: Ch-2p6
so part of: sequence
location: 3262..4272
location: region:3262-4272:1
so has part: feature:3262-4272:1:exon
subclass of: SO_0000010

1262637
type: Gene
SIO_000068: ncbigene

position:3262:1
position: 3262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4272:1
position: 4272
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3262-4272:1:exon

Ch-2p6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 105154
locus tag: Ch-2p6
note: ORF4
codon start: 1
transl table: 11
product: nonstructural protein
translation: MLIFNVLAFIFGLLYLLNEALMICAYPFVCFIDSDNQLFFPKGVKSSKPWDKVRELNALEQAQPEEYRVRWVLMPCRRCKFCRVQNAKIWSYRCMHEASLYSQNCFLTLTYEDRHLPENGSLVRDHPRLFLMRLREHIYPHKIRYFGCGEYGSKLQRPHYHLLIYNYDFPDKKLLSKKRGNPLFVSEKLMRLWPFGFSTVGSVTRQSAGYVARYSLKKVNGDISQDHYGQRLPEFLMCSLKPGIGADWYEKYKCDVYPQDYLVVQDKGKSFKTRPPRYYDKLHSRFDPEEMDEVKQKRIEKVMALPELTQDKAEVKQYIFNDRTKRLFRDYEEESY
SIO_010081: Ch-2p6
subclass of: SO_0000673
so part of: Ch-2p6
location: 3262..4272
location: region:3262-4272:1
so has part: feature:3262-4272:1:exon

NP_054653.1
type: Protein
SIO_000068: ncbiprotein

Q9MBU0
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:3262-4272:1:exon

Ch-2p7
type: Gene
subclass of: SO_0000704
RO_0002162: 105154
locus tag: Ch-2p7
so part of: sequence
location: 4302..4556
location: region:4302-4556:1
so has part: feature:4302-4556:1:exon
subclass of: SO_0000010

1262635
type: Gene
SIO_000068: ncbigene

position:4302:1
position: 4302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4556:1
position: 4556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4302-4556:1:exon

Ch-2p7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 105154
locus tag: Ch-2p7
note: ORF5
codon start: 1
transl table: 11
product: nonstructural protein
translation: MKVFTVFDIKTEIYQQPFFMQATGAAIRAFSDMVNEDPTKNQFAAHPEDYILYEIGSYDDSTGTFIPLDVPKALGTGLDFKHKQ
SIO_010081: Ch-2p7
subclass of: SO_0000673
so part of: Ch-2p7
location: 4302..4556
location: region:4302-4556:1
so has part: feature:4302-4556:1:exon

NP_054654.1
type: Protein
SIO_000068: ncbiprotein

Q9MBT9
type: UniProt
SIO_000068: uniprot

urn:…
SIO_000300: 1
SIO_000628: feature:4302-4556:1:exon