Helicobacter suis strain NHP19-4022 plasmid pNHP194022_1, complete sequence.
Bacteria; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter.
Genomic analysis of gastric non-Helicobacter pylori Helicobacters isolated in Japan
Submitted (10-APR-2020) Contact:Masato Suzuki National Institute of Infectious Diseases, AMR Research Center; 4-2-1 Aobacho, Higashimurayama, Tokyo 189-0002, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP023047.1.\nAnnotated at DFAST https://dfast.nig.ac.jp/\n\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.8.0\nGenome Coverage :: 377.3x\nSequencing Technology :: Illumina MiniSeq; ONT MinION R9.4.1\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/19/2022 14:14:17\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,763\nCDSs (total) :: 1,714\nGenes (coding) :: 1,652\nCDSs (with protein) :: 1,652\nGenes (RNA) :: 49\nrRNAs :: 3, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 2, 2 (5S, 16S, 23S)\ntRNAs :: 39\nncRNAs :: 3\nPseudo Genes (total) :: 62\nCDSs (without protein) :: 62\nPseudo Genes (ambiguous residues) :: 0 of 62\nPseudo Genes (frameshifted) :: 31 of 62\nPseudo Genes (incomplete) :: 27 of 62\nPseudo Genes (internal stop) :: 14 of 62\nPseudo Genes (multiple problems) :: 10 of 62\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF013235.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013882034.1
COORDINATES: similar to AA sequence:RefSeq:WP_013882035.1
COORDINATES: similar to AA sequence:RefSeq:WP_006564015.1
type II toxin-antitoxin system HipA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_013889563.1
RNA-guided endonuclease TnpB family protein