Oenococcus kitaharae DSM 17330 plasmid unnamed, whole genome shotgun sequence.
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Oenococcus.
Functional divergence in the genus Oenococcus as predicted by genome sequencing of the newly-described species, Oenococcus kitaharae
Submitted (10-AUG-2011) Wine Biosciences, The Australian Wine Research Institute, PO Box 197, Glen Osmond, South Australia 5064, Australia
REFSEQ INFORMATION: The reference sequence is identical to\nCM001399.1.\nBacteria available from the German Collection of Microorganisms and\nCell Cultures (DSMZ).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: MIRA v. 3.2.1\nGenome Coverage :: 50x\nSequencing Technology :: Illumina GA IIx paired-end sequencing\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/12/2023 00:41:10\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,874\nCDSs (total) :: 1,820\nGenes (coding) :: 1,795\nCDSs (with protein) :: 1,795\nGenes (RNA) :: 54\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 45\nncRNAs :: 3\nPseudo Genes (total) :: 25\nCDSs (without protein) :: 25\nPseudo Genes (ambiguous residues) :: 0 of 25\nPseudo Genes (frameshifted) :: 5 of 25\nPseudo Genes (incomplete) :: 19 of 25\nPseudo Genes (internal stop) :: 2 of 25\nPseudo Genes (multiple problems) :: 1 of 25\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013727.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003757099.1
COORDINATES: similar to AA sequence:RefSeq:WP_004269869.1
COORDINATES: similar to AA sequence:RefSeq:WP_005917937.1
RelB/DinJ family addiction module antitoxin
COORDINATES: protein motif:HMM:NF016876.2
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: protein motif:HMM:NF013235.2
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002392593.1