Gadus chalcogrammus mitochondrion, complete genome.
type: Entry
definition: Gadus chalcogrammus mitochondrion, complete genome.
sequence version: NC_004449.1
sequence date: 2023-04-03
sequence: sequence
division: VRT
label: NC_004449.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Gadus chalcogrammus (walleye pollock)
organism: Gadus chalcogrammus
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus.
reference: 1
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence was derived from AB094061.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16571
topology: circular
so has quality: SO_0000988
location: 1..16571
location: region:1-16571:1
RO_0002162: 1042646

NC_004449
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: Complete nucleotide sequence and variation of mitochondrial DNA from 10 individuals of walleye pollock, Theragra chalcogramma
author: Yanagimoto, T.
author: Kitamura, T.
author: Kobayashi, T.
journal: Fish. Sci. 70, 885-895 (2004)

2
title: Direct Submission
journal: Submitted (18-DEC-2002) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Yanagimoto, T.
journal: Submitted (16-OCT-2002) Hokkaido National Fisheries Research Institute, 116, Katsurakoi, Kushiro, Hokkaido 085-0802, Japan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16571:1
position: 16571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16571:1:source
so part of: sequence
organism: Gadus chalcogrammus
organelle: mitochondrion
mol type: genomic DNA

1042646
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1042646
product: tRNA-Phe
so part of: sequence
location: 1..68
location: region:1-68:1
so has part: feature:1-68:1:region

position:68:1
position: 68
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-68:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 1042646
product: s-rRNA
note: 12S ribosomal RNA
so part of: sequence
location: 69..1021
location: region:69-1021:1
so has part: feature:69-1021:1:region

position:69:1
position: 69
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1021:1
position: 1021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:69-1021:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1042646
product: tRNA-Val
so part of: sequence
location: 1022..1093
location: region:1022-1093:1
so has part: feature:1022-1093:1:region

position:1022:1
position: 1022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1093:1
position: 1093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1022-1093:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 1042646
product: l-rRNA
note: 16S ribosomal RNA
so part of: sequence
location: 1094..2758
location: region:1094-2758:1
so has part: feature:1094-2758:1:region

position:1094:1
position: 1094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2758:1
position: 2758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1094-2758:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1042646
product: tRNA-Leu
codon recognized: UUR
so part of: sequence
location: 2759..2832
location: region:2759-2832:1
so has part: feature:2759-2832:1:region

position:2759:1
position: 2759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2832:1
position: 2832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2759-2832:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 1042646
gene: ND1
so part of: sequence
location: 2833..3807
location: region:2833-3807:1
so has part: feature:2833-3807:1:exon
subclass of: SO_0000010

806147
type: Gene
SIO_000068: ncbigene

position:2833:1
position: 2833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3807:1
position: 3807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2833-3807:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1042646
gene: ND1
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MTNIVVSYILNPLIYMVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPIRPSTSSPLLFVFAPVLALTLALTLWAPMPMPFPVADLNLSILFVLALSSLAVYSILGSGWASNSKYALVGALRAVAQTISYEVSLGLILLSVIIFSGGFTLQTFSTTQEATWLALPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSTVLFLGSSYSTTMPEFTSLTLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLSLSTACAGLPPHA
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2833..3807
location: region:2833-3807:1
so has part: feature:2833-3807:1:exon

NP_758793.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2833-3807:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1042646
product: tRNA-Ile
so part of: sequence
location: 3809..3878
location: region:3809-3878:1
so has part: feature:3809-3878:1:region

position:3809:1
position: 3809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3878:1
position: 3878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3809-3878:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1042646
product: tRNA-Gln
so part of: sequence
location: complement(3878..3948)
location: region:3878-3948:-1
so has part: feature:3878-3948:-1:region

position:3878:-1
position: 3878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3948:-1
position: 3948
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3878-3948:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1042646
product: tRNA-Met
so part of: sequence
location: 3948..4017
location: region:3948-4017:1
so has part: feature:3948-4017:1:region

position:3948:1
position: 3948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4017:1
position: 4017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3948-4017:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 1042646
gene: ND2
so part of: sequence
location: 4018..5062
location: region:4018-5062:1
so has part: feature:4018-5062:1:exon
subclass of: SO_0000010

806149
type: Gene
SIO_000068: ncbigene

position:4018:1
position: 4018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5062:1
position: 5062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4018-5062:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1042646
gene: ND2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:5062,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MNPFILSILLLSLGLGTTLTFASSHWLLAWMGLEISTLAIIPLMSQHHHPRAVEATTKYFITQAAAAALILFASTTNAWITGQWDINFDLHFFPASMLTMALALKMGLAPVHFWLPEVLQGLDLTTGLILSTWQKLAPFILMCQIMPVNSSLITFLGVTSTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVMQFNQQLALLALVIYIPMTFSTFMIFKTNSSTTVNTLAASWAKTPALTAITPMILLSLGGLPPLSGFMPKWMILQELTKQDIPLTASIAALSALLSLYFYLRVSYAMTLTISPNNLNATTPWRLQTTASTLPLAISATISAMLLPLAPATLALLSL
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 4018..5062
location: region:4018-5062:1
so has part: feature:4018-5062:1:exon

NP_758794.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4018-5062:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1042646
product: tRNA-Trp
so part of: sequence
location: 5063..5132
location: region:5063-5132:1
so has part: feature:5063-5132:1:region

position:5063:1
position: 5063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5132:1
position: 5132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5063-5132:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1042646
product: tRNA-Ala
so part of: sequence
location: complement(5134..5202)
location: region:5134-5202:-1
so has part: feature:5134-5202:-1:region

position:5134:-1
position: 5134
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5202:-1
position: 5202
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5134-5202:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1042646
product: tRNA-Asn
so part of: sequence
location: complement(5205..5277)
location: region:5205-5277:-1
so has part: feature:5205-5277:-1:region

position:5205:-1
position: 5205
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5277:-1
position: 5277
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5205-5277:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1042646
product: tRNA-Cys
so part of: sequence
location: 5310..5376
location: region:5310-5376:1
so has part: feature:5310-5376:1:region

position:5310:1
position: 5310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5376:1
position: 5376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5310-5376:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1042646
product: tRNA-Tyr
so part of: sequence
location: complement(5377..5443)
location: region:5377-5443:-1
so has part: feature:5377-5443:-1:region

position:5377:-1
position: 5377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5443:-1
position: 5443
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5377-5443:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 1042646
gene: COX1
so part of: sequence
location: 5445..6995
location: region:5445-6995:1
so has part: feature:5445-6995:1:exon
subclass of: SO_0000010

806153
type: Gene
SIO_000068: ncbigene

position:5445:1
position: 5445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6995:1
position: 6995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5445-6995:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1042646
gene: COX1
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MAITRWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPLMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIINMKPPAISQYQTPLFVWAVLITAVLLLLSLPVLAAGITMLLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVAYYSGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGSIKWETPLLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAAFVHWFPLFTGYTLHDTWTKIHFGVMFVGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLWNTVSSIGSLISLMAVIMFLFILWEAFAAKREVMAVEMTMTNVEWLHGCPPPYHTFEEPAFVQIQTR
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5445..6995
location: region:5445-6995:1
so has part: feature:5445-6995:1:exon

NP_758795.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5445-6995:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1042646
product: tRNA-Ser
codon recognized: UCN
so part of: sequence
location: complement(6998..7068)
location: region:6998-7068:-1
so has part: feature:6998-7068:-1:region

position:6998:-1
position: 6998
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7068:-1
position: 7068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6998-7068:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1042646
product: tRNA-Asp
so part of: sequence
location: 7072..7139
location: region:7072-7139:1
so has part: feature:7072-7139:1:region

position:7072:1
position: 7072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7139:1
position: 7139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7072-7139:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 1042646
gene: COX2
so part of: sequence
location: 7153..7843
location: region:7153-7843:1
so has part: feature:7153-7843:1:exon
subclass of: SO_0000010

806156
type: Gene
SIO_000068: ncbigene

position:7153:1
position: 7153
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7843:1
position: 7843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7153-7843:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1042646
gene: COX2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:7843,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAHPSQLGFQDAASPVMEELLHFHDHALMIVFLISTLVLYIIVAMVSTKLTNKYILDSQEIEIIWTVLPAVILILIALPSLRILYLMDEINDPHLTIKAMGHQWYWSYEYTDYEDLGFDSYMIPTQDLAPGQFRLLEADHRMVVPVESPIRILISAEDVLHSWAVPALGIKMDAVPGRLNQTAFITSRPGVFYGQCSEICGANHSFMPIVVEAVPLEHFESWSSLMLEDA
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7153..7843
location: region:7153-7843:1
so has part: feature:7153-7843:1:exon

NP_758796.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7153-7843:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1042646
product: tRNA-Lys
so part of: sequence
location: 7844..7917
location: region:7844-7917:1
so has part: feature:7844-7917:1:region

position:7844:1
position: 7844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7917:1
position: 7917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7844-7917:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 1042646
gene: ATP8
so part of: sequence
location: 7919..8086
location: region:7919-8086:1
so has part: feature:7919-8086:1:exon
subclass of: SO_0000010

806151
type: Gene
SIO_000068: ncbigene

position:7919:1
position: 7919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8086:1
position: 8086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7919-8086:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1042646
gene: ATP8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLNPAPWFMIFMFTWAIFLTILPPKVMAHTFPNEPSPQGMTTPKTAPWNWPWH
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 7919..8086
location: region:7919-8086:1
so has part: feature:7919-8086:1:exon

NP_758797.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7919-8086:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 1042646
gene: ATP6
so part of: sequence
location: 8077..8760
location: region:8077-8760:1
so has part: feature:8077-8760:1:exon
subclass of: SO_0000010

806150
type: Gene
SIO_000068: ncbigene

position:8077:1
position: 8077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8760:1
position: 8760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8077-8760:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1042646
gene: ATP6
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 6
translation: MTLSLFDQFSSPSFLGIPMILMALALPWLLIPTPTSRWLSNRVVSLQGWFIARFTNQLFLPLNVGGHKWAPLLASLMMFLLTLNMLGLLPYIFTPTTQLSLNLGLAVPLWLATVLIGMRNQPTHALGHFLPEGTPTALIPILIIIETISLFIRPLALGVRLTANLTAGHLLIHLISSAVFVLMPMMPAVAILTAVLLLLLTMLEVAVAMIQAYVFILLLSLYLQENV
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 8077..8760
location: region:8077-8760:1
so has part: feature:8077-8760:1:exon

NP_758798.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8077-8760:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 1042646
gene: COX3
so part of: sequence
location: 8760..9544
location: region:8760-9544:1
so has part: feature:8760-9544:1:exon
subclass of: SO_0000010

806154
type: Gene
SIO_000068: ncbigene

position:9544:1
position: 9544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8760-9544:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1042646
gene: COX3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9543..9544,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit III
translation: MTHQAHAYHMVDPSPWPLTGAVAALLMTSGLAVWFHFHSTTLMALGTVLLLLTMYQWWRDIIREGTFQGHHTPPVQKGLRYGMILFITSEVFFFLGFFWAFYHASLAPTPELGGCWPPTGITTLDPFEVPLLNTAVLLASGVTVTWAHHSIMEGERKQAIHSLTLTILLGFYFTFLQGLEYYDAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQIRYHFTSEHHFGFEAAAWYWHFVDVVWLFLYISIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8760..9544
location: region:8760-9544:1
so has part: feature:8760-9544:1:exon

NP_758799.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8760-9544:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1042646
product: tRNA-Gly
so part of: sequence
location: 9545..9614
location: region:9545-9614:1
so has part: feature:9545-9614:1:region

position:9545:1
position: 9545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9614:1
position: 9614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9545-9614:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 1042646
gene: ND3
so part of: sequence
location: 9615..9963
location: region:9615-9963:1
so has part: feature:9615-9963:1:exon
subclass of: SO_0000010

806152
type: Gene
SIO_000068: ncbigene

position:9615:1
position: 9615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9963:1
position: 9963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9615-9963:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1042646
gene: ND3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9963,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNLISTVILIASALSLILIVVSFWLPQLSPDYEKLSPYECGFDPLGSARLPFSLRFFLIAILFLLFDLEIALLLPLPWGDQLSNPTLTFMWATSVLALLTLGLIYEWLQGGLEWAE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 9615..9963
location: region:9615-9963:1
so has part: feature:9615-9963:1:exon

NP_758800.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9615-9963:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1042646
product: tRNA-Arg
so part of: sequence
location: 9964..10032
location: region:9964-10032:1
so has part: feature:9964-10032:1:region

position:9964:1
position: 9964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10032:1
position: 10032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9964-10032:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 1042646
gene: ND4L
so part of: sequence
location: 10033..10329
location: region:10033-10329:1
so has part: feature:10033-10329:1:exon
subclass of: SO_0000010

806146
type: Gene
SIO_000068: ncbigene

position:10033:1
position: 10033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10329:1
position: 10329
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10033-10329:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1042646
gene: ND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MTPTHFSISSAFLLGLMGLAFHRTHLLSALLCLEAMMLALFIALSLWSLQLDATGCSTAPMLMLAFSACEASAGLALLVATARTHGTDHMQALNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 10033..10329
location: region:10033-10329:1
so has part: feature:10033-10329:1:exon

NP_758801.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10033-10329:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 1042646
gene: ND4
so part of: sequence
location: 10323..11703
location: region:10323-11703:1
so has part: feature:10323-11703:1:exon
subclass of: SO_0000010

806155
type: Gene
SIO_000068: ncbigene

position:10323:1
position: 10323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11703:1
position: 11703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10323-11703:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1042646
gene: ND4
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:11703,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKILIPTLFLLPTTWLTSSKWLWPTALTQSMLIALGSITWLNNTTDTGWTALNSYIGTDPLSTPLLVLSCWLLPLMLLASQNHLSSEPMNRQRMYITLLATLQLFLILAFGATEMIMFYVMFEATLIPTLLVITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLMLQNSTGTLSLLIIPYAKPLLLMPFGSKIWWAACMIAFLVKMPLYGMHLWLPKAHVEAPVAGSMVLAAVLLKLGGYGMMRLMIVLDPLSKEMVYPFIVLALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAHGLASSALFCLANTNYERTHSRTMLLARGLQIALPLMTTWWFIASLANLALPPLPNLMGELMILTSLFNWSAWTLVLTGIGTLITAAYSLYMFLMSQRGPLPQHMLALPPSYTREHLLMALHLIPLLLIILKPALLWGWFA
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10323..11703
location: region:10323-11703:1
so has part: feature:10323-11703:1:exon

NP_758802.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10323-11703:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1042646
product: tRNA-His
so part of: sequence
location: 11704..11772
location: region:11704-11772:1
so has part: feature:11704-11772:1:region

position:11704:1
position: 11704
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11772:1
position: 11772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11704-11772:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1042646
product: tRNA-Ser
codon recognized: AGY
so part of: sequence
location: 11773..11840
location: region:11773-11840:1
so has part: feature:11773-11840:1:region

position:11773:1
position: 11773
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11840:1
position: 11840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11773-11840:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1042646
product: tRNA-Leu
codon recognized: CUN
so part of: sequence
location: 11843..11915
location: region:11843-11915:1
so has part: feature:11843-11915:1:region

position:11843:1
position: 11843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11915:1
position: 11915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11843-11915:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 1042646
gene: ND5
so part of: sequence
location: 11916..13754
location: region:11916-13754:1
so has part: feature:11916-13754:1:exon
subclass of: SO_0000010

806145
type: Gene
SIO_000068: ncbigene

position:11916:1
position: 11916
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13754:1
position: 13754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11916-13754:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1042646
gene: ND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MHPTTLMYTSSLLLMFAVLLYPLLVTFTSLPLNNDWASSHAKTAVKSAFLISLAPLSLFLSTGMEAVTSSWTWMVTTTLDITLSFKFDHYSIIFIPIALYVTWSILEFATWYMHSDPLMNRFFKYLLTFLVAMLILVSANNLFQLFIGWEGVGIMSFLLIGWWHGRADANTAALQAVLYNRVGDIGLILGMAWLVTNVNSWDIQQMFILSKDLDMTLPLLGLILAATGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIRMSPLMENNQTALTLCLCLGALTTMFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSVIHSLNDEQDIRKMGGLHHLAPFTSSCLTVGSLALTGTPFLAGFFSKDAIIEALNTSHVNAWALTLTLIATSFTAIYSLRVIFFVTMGTPRFLPLSPINENNSAVINPLKRLAWGSIFGGLLVMLNINLFKTPVLTMPTELKLAALAVSVLGLLTALELATLTSKQFKVTPLRTPHHFSTSLGFVPAIIHRQVPQLSLLLGQKIASQMVDQTWLEKTGPKAIANATTPLASATSNMQQGLIKTYLTLFLMTLVLVTLISAT
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 11916..13754
location: region:11916-13754:1
so has part: feature:11916-13754:1:exon

NP_758803.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11916-13754:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 1042646
gene: ND6
so part of: sequence
location: complement(13750..14271)
location: region:13750-14271:-1
so has part: feature:13750-14271:-1:exon
subclass of: SO_0000010

806148
type: Gene
SIO_000068: ncbigene

position:13750:-1
position: 13750
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14271:-1
position: 14271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13750-14271:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1042646
gene: ND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MAYIMLTLLIGMVLGVISVASNPSPYFAALGLVLVAGVGCVVLMGHGGSFLSLVLFLIYLGGMLVVFAYCAALAAEPYPEAWGEWSVLGSVLGYLLLVVGAGSWFWGGWYEGMWVPVDELIEFSVVAADSGGVALMYSLGGGLLVVSAWVLLLTLLVVLELTRGLARGALRAV
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(13750..14271)
location: region:13750-14271:-1
so has part: feature:13750-14271:-1:exon

NP_758804.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13750-14271:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1042646
product: tRNA-Glu
so part of: sequence
location: complement(14272..14340)
location: region:14272-14340:-1
so has part: feature:14272-14340:-1:region

position:14272:-1
position: 14272
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14340:-1
position: 14340
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14272-14340:-1:region

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 1042646
gene: CYTB
so part of: sequence
location: 14345..15485
location: region:14345-15485:1
so has part: feature:14345-15485:1:exon
subclass of: SO_0000010

806144
type: Gene
SIO_000068: ncbigene

position:14345:1
position: 14345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15485:1
position: 15485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14345-15485:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1042646
gene: CYTB
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:15485,aa:TERM)
transl table: 2
product: cytochrome b
translation: MASLRKTHPILKIANSALVDLPAPSNISVWWNFGSLLGLCLITQLLTGLFLAMHYTSDIETAFSSVVHICRDVNYGWLIRNMHANGASFFFICLYMHIARGLYYGSYLFVETWNIGVVLFLLVMMTSFVGYVLPWGQMSFWGATVITNLMSTVPYVGDALVQWIWGGFSVDNATLTRFFAFHFLFPFVVAAFTMLHLLFLHETGSNNPTGINSNADKIPFHPYFTYKDLLGFAVMLLGLTALALFAPNLLGDPDNFTPANPIVTPPHVKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPFLHTSKQRGLTFRPLTQMLFWVLVADMLVLTWIGGVPVEHPFIIIGQVASVLYFSLFLVLFPLAGMTENKALEWN
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 14345..15485
location: region:14345-15485:1
so has part: feature:14345-15485:1:exon

NP_758805.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14345-15485:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1042646
product: tRNA-Thr
so part of: sequence
location: 15486..15556
location: region:15486-15556:1
so has part: feature:15486-15556:1:region

position:15486:1
position: 15486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15556:1
position: 15556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15486-15556:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 1042646
product: tRNA-Pro
so part of: sequence
location: complement(15629..15698)
location: region:15629-15698:-1
so has part: feature:15629-15698:-1:region

position:15629:-1
position: 15629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15698:-1
position: 15698
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15629-15698:-1:region

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 1042646
so part of: sequence
location: 15722..16571
location: region:15722-16571:1
so has part: feature:15722-16571:1:region

position:15722:1
position: 15722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15722-16571:1:region