Rhizobium gallicum bv. gallicum R602sp strain R602 voucher MSDJ1109 plasmid pRgalR602b, complete sequence.
Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.
Complete genome sequence of Rhizobium gallicum bv. gallicum R602
Submitted (08-NOV-2013) Programa de Genomica Evolutiva, Centro de Ciencias Genomicas U.N.A.M., Av. Universidad s/n, Col. Chamilpa, Cuernavaca, Morelos 62210, Mexico
REFSEQ INFORMATION: The reference sequence is identical to\nCP006879.1.\nBacterial strain is available under request to Dr. Esperanza\nMartinez (emartine@ccg.unam.mx).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Velvet v. 1.1.06; Newbler v. 5.3;\n phred_Phrap/Consed23; Sspace_Bassic v. 2.0\nGenome Coverage :: 150x\nSequencing Technology :: 454 GS; Titanium; Illumina GAII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/30/2022 05:18:50\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,102\nCDSs (total) :: 7,038\nGenes (coding) :: 6,660\nCDSs (with protein) :: 6,660\nGenes (RNA) :: 64\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 4\nPseudo Genes (total) :: 378\nCDSs (without protein) :: 378\nPseudo Genes (ambiguous residues) :: 0 of 378\nPseudo Genes (frameshifted) :: 225 of 378\nPseudo Genes (incomplete) :: 275 of 378\nPseudo Genes (internal stop) :: 55 of 378\nPseudo Genes (multiple problems) :: 155 of 378\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Agricultural field (no beans grown in the 5 previous years)
COORDINATES: similar to AA sequence:RefSeq:WP_018516708.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007635074.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017996075.1
COORDINATES: similar to AA sequence:RefSeq:WP_020809951.1
COORDINATES: similar to AA sequence:RefSeq:WP_014989491.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007601766.1
COORDINATES: similar to AA sequence:RefSeq:WP_013569949.1
COORDINATES: similar to AA sequence:RefSeq:WP_007601913.1
COORDINATES: similar to AA sequence:RefSeq:WP_007601915.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007601917.1
multiubiquitin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007601919.1
GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF039808.1
COORDINATES: protein motif:HMM:NF012783.2
ATP-dependent Clp protease proteolytic subunit
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_009397004.1
COORDINATES: protein motif:HMM:NF021508.2
COORDINATES: protein motif:HMM:NF014667.2
COORDINATES: protein motif:HMM:NF025030.2
COORDINATES: similar to AA sequence:RefSeq:WP_020748264.1
COORDINATES: protein motif:HMM:NF016724.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012737309.1
COORDINATES: protein motif:HMM:NF022063.2
COORDINATES: similar to AA sequence:RefSeq:WP_015930471.1
COORDINATES: protein motif:HMM:NF024139.2
COORDINATES: similar to AA sequence:RefSeq:WP_018240322.1
COORDINATES: protein motif:HMM:NF020302.2
COORDINATES: similar to AA sequence:RefSeq:WP_007773087.1
COORDINATES: protein motif:HMM:NF023695.2
COORDINATES: protein motif:HMM:NF024980.2
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011653555.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF017539.2
COORDINATES: protein motif:HMM:NF016362.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611472.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011504961.1
GO:0004803 - transposase activity [Evidence IEA]
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009490103.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612021.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018517062.1
hydrogenase expression/formation protein HypE
COORDINATES: similar to AA sequence:RefSeq:WP_006329038.1
GO:0016530 - metallochaperone activity [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018517060.1
HypC/HybG/HupF family hydrogenase formation chaperone
COORDINATES: similar to AA sequence:RefSeq:WP_018517059.1
GO:0003998 - acylphosphatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006205711.1
GO:0016530 - metallochaperone activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
hydrogenase nickel incorporation protein HypB
COORDINATES: similar to AA sequence:RefSeq:WP_016919616.1
GO:0008901 - ferredoxin hydrogenase activity [Evidence IEA]
hydrogenase maturation nickel metallochaperone HypA
COORDINATES: similar to AA sequence:RefSeq:WP_006205713.1
GO:0016151 - nickel cation binding [Evidence IEA]
nickel-dependent hydrogenase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018517054.1
[NiFe]-hydrogenase assembly chaperone HybE
COORDINATES: similar to AA sequence:RefSeq:WP_018517053.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517052.1
hydrogenase expression/formation protein
COORDINATES: similar to AA sequence:RefSeq:WP_018517051.1
COORDINATES: similar to AA sequence:RefSeq:WP_011156500.1
COORDINATES: protein motif:HMM:NF016819.2
COORDINATES: similar to AA sequence:RefSeq:WP_006205721.1
HyaD/HybD family hydrogenase maturation endopeptidase
COORDINATES: similar to AA sequence:RefSeq:WP_018517047.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]
GO:0022904 - respiratory electron transport chain [Evidence IEA]
Ni/Fe-hydrogenase, b-type cytochrome subunit
COORDINATES: similar to AA sequence:RefSeq:WP_006614184.1
COORDINATES: similar to AA sequence:RefSeq:WP_018240254.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654595.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875392.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007693942.1
COORDINATES: similar to AA sequence:RefSeq:WP_006339565.1
COORDINATES: protein motif:HMM:NF024744.2
COORDINATES: similar to AA sequence:RefSeq:WP_013653162.1
COORDINATES: similar to AA sequence:RefSeq:WP_014131912.1
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: protein motif:HMM:NF013697.2
COORDINATES: similar to AA sequence:RefSeq:WP_007813049.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007813047.1
COORDINATES: protein motif:HMM:NF019421.2
COORDINATES: protein motif:HMM:NF024252.2
COORDINATES: similar to AA sequence:RefSeq:WP_017997028.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011883382.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003584766.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018325567.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018325568.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017263614.1
COORDINATES: similar to AA sequence:RefSeq:WP_018325553.1
GO:0008448 - N-acetylglucosamine-6-phosphate deacetylase activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]
N-acetylglucosamine-6-phosphate deacetylase
COORDINATES: similar to AA sequence:RefSeq:WP_017263624.1
COORDINATES: similar to AA sequence:RefSeq:WP_018325555.1
COORDINATES: similar to AA sequence:RefSeq:WP_018325556.1
COORDINATES: similar to AA sequence:RefSeq:WP_006832752.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517037.1
COORDINATES: similar to AA sequence:RefSeq:WP_004112705.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517039.1
COORDINATES: similar to AA sequence:RefSeq:WP_017996970.1
COORDINATES: similar to AA sequence:RefSeq:WP_018325564.1
COORDINATES: similar to AA sequence:RefSeq:WP_018098874.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_006699148.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004112807.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004112810.1
COORDINATES: similar to AA sequence:RefSeq:WP_004112813.1
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004112816.1
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_004112817.1
COORDINATES: protein motif:HMM:NF022151.2
COORDINATES: similar to AA sequence:RefSeq:WP_004119812.1
COORDINATES: similar to AA sequence:RefSeq:WP_018098893.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611992.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008523062.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007634987.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_020047767.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427633.1
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: similar to AA sequence:RefSeq:WP_004398740.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017997715.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_016736948.1
COORDINATES: similar to AA sequence:RefSeq:WP_012556317.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654265.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017957624.1
COORDINATES: similar to AA sequence:RefSeq:WP_018240519.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068554.1
COORDINATES: protein motif:HMM:NF013431.2
COORDINATES: similar to AA sequence:RefSeq:WP_018240714.1
COORDINATES: similar to AA sequence:RefSeq:WP_003588072.1
COORDINATES: similar to AA sequence:RefSeq:WP_004112688.1
COORDINATES: similar to AA sequence:RefSeq:WP_018240252.1
COORDINATES: similar to AA sequence:RefSeq:WP_018098928.1
COORDINATES: protein motif:HMM:NF013862.2
GO:0006629 - lipid metabolic process [Evidence IEA]
patatin-like phospholipase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018328749.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875355.1
COORDINATES: similar to AA sequence:RefSeq:WP_004125873.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958624.1
COORDINATES: similar to AA sequence:RefSeq:WP_010967448.1
beta-ketoacyl-[acyl-carrier-protein] synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004112871.1
COORDINATES: protein motif:HMM:NF012927.2
COORDINATES: similar to AA sequence:RefSeq:WP_010875343.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612003.1
COORDINATES: similar to AA sequence:RefSeq:WP_018483041.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591674.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011091014.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011091015.1
COORDINATES: similar to AA sequence:RefSeq:WP_016842696.1
coproporphyrinogen-III oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611357.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004112820.1
COORDINATES: similar to AA sequence:RefSeq:WP_004112823.1
COORDINATES: similar to AA sequence:RefSeq:WP_004112825.1
COORDINATES: similar to AA sequence:RefSeq:WP_010967021.1
COORDINATES: protein motif:HMM:NF012481.2
COORDINATES: similar to AA sequence:RefSeq:WP_010967462.1
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: similar to AA sequence:RefSeq:WP_016558464.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004129902.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017957255.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558469.1
COORDINATES: similar to AA sequence:RefSeq:WP_004675840.1
nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; in R. etli there are three essentially identical copies of nifH which are actively expressed during symbiosis; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018240497.1
GO:0051540 - metal cluster binding [Evidence IEA]
GO:0009399 - nitrogen fixation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014763243.1
COORDINATES: similar to AA sequence:RefSeq:WP_009991126.1
COORDINATES: similar to AA sequence:RefSeq:WP_004677870.1
COORDINATES: similar to AA sequence:RefSeq:WP_006199548.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558463.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
cytochrome-c oxidase, cbb3-type subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_003526714.1
cytochrome-c oxidase, cbb3-type subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_007795252.1
CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone
COORDINATES: similar to AA sequence:RefSeq:WP_016558460.1
cytochrome-c oxidase, cbb3-type subunit III
COORDINATES: similar to AA sequence:RefSeq:WP_011654242.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0008535 - respiratory chain complex IV assembly [Evidence IEA]
cytochrome c oxidase accessory protein CcoG
COORDINATES: similar to AA sequence:RefSeq:WP_007795261.1
COORDINATES: similar to AA sequence:RefSeq:WP_007795263.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558455.1
cbb3-type cytochrome oxidase assembly protein CcoS
COORDINATES: similar to AA sequence:RefSeq:WP_007539120.1
COORDINATES: similar to AA sequence:RefSeq:WP_012707563.1
GO:0051989 - coproporphyrinogen dehydrogenase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
oxygen-independent coproporphyrinogen III oxidase
COORDINATES: similar to AA sequence:RefSeq:WP_007539115.1
COORDINATES: similar to AA sequence:RefSeq:WP_010967648.1
COORDINATES: similar to AA sequence:RefSeq:WP_007539111.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247203.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653079.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053448.1
COORDINATES: similar to AA sequence:RefSeq:WP_015241489.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016848463.1
COORDINATES: similar to AA sequence:RefSeq:WP_004125963.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007636999.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019856454.1
GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0009877 - nodulation [Evidence IEA]; GO:0009312 - oligosaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018328740.1
COORDINATES: similar to AA sequence:RefSeq:WP_008878232.1
nodulation factor ABC transporter ATP-binding protein NodI
COORDINATES: similar to AA sequence:RefSeq:WP_018328738.1
COORDINATES: similar to AA sequence:RefSeq:WP_010930118.1
GO:0047834 - D-threo-aldose 1-dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013845745.1
COORDINATES: similar to AA sequence:RefSeq:WP_015887285.1
GO:0004781 - sulfate adenylyltransferase (ATP) activity [Evidence IEA]
GO:0019419 - sulfate reduction [Evidence IEA]
sulfate adenylyltransferase subunit CysD
COORDINATES: similar to AA sequence:RefSeq:WP_017275910.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
sulfate adenylyltransferase subunit CysN
COORDINATES: similar to AA sequence:RefSeq:WP_008878209.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558522.1
COORDINATES: protein motif:HMM:NF022763.2
type VI secretion system-associated protein TagO
COORDINATES: similar to AA sequence:RefSeq:WP_007630388.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654869.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003910 - DNA ligase (ATP) activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004118299.1
COORDINATES: protein motif:HMM:NF013970.2
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_076611977.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004678511.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636888.1
COORDINATES: similar to AA sequence:RefSeq:WP_004678515.1
COORDINATES: similar to AA sequence:RefSeq:WP_008536545.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053432.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
nitrogenase cofactor biosynthesis protein NifB
COORDINATES: similar to AA sequence:RefSeq:WP_018247198.1
GO:0009399 - nitrogen fixation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
nif-specific transcriptional activator NifA
COORDINATES: similar to AA sequence:RefSeq:WP_011970923.1
COORDINATES: similar to AA sequence:RefSeq:WP_008536548.1
COORDINATES: similar to AA sequence:RefSeq:WP_018240552.1
electron transfer flavoprotein subunit alpha/FixB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016558440.1
electron transfer flavoprotein subunit beta/FixA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007539073.1
nitrogenase stabilizing/protective protein NifW
COORDINATES: protein motif:HMM:NF024868.2
COORDINATES: protein motif:HMM:NF012885.2
COORDINATES: similar to AA sequence:RefSeq:WP_007539072.1
GO:0031071 - cysteine desulfurase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013738.2
GO:0005506 - iron ion binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
iron-sulfur cluster assembly scaffold protein
COORDINATES: similar to AA sequence:RefSeq:WP_004678546.1
iron-sulfur cluster assembly accessory protein
COORDINATES: similar to AA sequence:RefSeq:WP_009495345.1
GO:0030151 - molybdenum ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004126070.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004126073.1
COORDINATES: similar to AA sequence:RefSeq:WP_012494742.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875401.1
glycerophosphodiester phosphodiesterase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010875400.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875383.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875382.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517033.1
COORDINATES: similar to AA sequence:RefSeq:WP_018240650.1
COORDINATES: similar to AA sequence:RefSeq:WP_018240649.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875378.1
COORDINATES: similar to AA sequence:RefSeq:WP_008536557.1
COORDINATES: similar to AA sequence:RefSeq:WP_018240536.1
COORDINATES: similar to AA sequence:RefSeq:WP_009495349.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018240534.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558430.1
COORDINATES: similar to AA sequence:RefSeq:WP_007539051.1
GO:0016611 - iron-iron nitrogenase complex [Evidence IEA]; GO:0016612 - molybdenum-iron nitrogenase complex [Evidence IEA]; GO:0016613 - vanadium-iron nitrogenase complex [Evidence IEA]
GO:0016163 - nitrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003532774.1
GO:0016612 - molybdenum-iron nitrogenase complex [Evidence IEA]
nitrogenase molybdenum-iron protein alpha chain
COORDINATES: similar to AA sequence:RefSeq:WP_006331758.1
nitrogenase molybdenum-iron protein subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_009762336.1
nitrogenase iron-molybdenum cofactor biosynthesis protein NifE
COORDINATES: similar to AA sequence:RefSeq:WP_010913612.1
nitrogenase iron-molybdenum cofactor biosynthesis protein NifN
COORDINATES: similar to AA sequence:RefSeq:WP_016737533.1
NifX-associated nitrogen fixation protein
COORDINATES: similar to AA sequence:RefSeq:WP_009991124.1
COORDINATES: protein motif:HMM:NF022540.2
exopolysaccharide production repressor protein
COORDINATES: similar to AA sequence:RefSeq:WP_016558415.1
COORDINATES: similar to AA sequence:RefSeq:WP_007692245.1
COORDINATES: similar to AA sequence:RefSeq:WP_015341606.1
amino acid--[acyl-carrier-protein] ligase
COORDINATES: similar to AA sequence:RefSeq:WP_012652840.1
COORDINATES: similar to AA sequence:RefSeq:WP_012652839.1
COORDINATES: similar to AA sequence:RefSeq:WP_012330260.1
GO:0008660 - 1-aminocyclopropane-1-carboxylate deaminase activity [Evidence IEA]
GO:0042217 - 1-aminocyclopropane-1-carboxylate catabolic process [Evidence IEA]
1-aminocyclopropane-1-carboxylate deaminase
COORDINATES: similar to AA sequence:RefSeq:WP_013851068.1
GO:0004073 - aspartate-semialdehyde dehydrogenase activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0008652 - amino acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611292.1
COORDINATES: similar to AA sequence:RefSeq:WP_003563912.1
COORDINATES: similar to AA sequence:RefSeq:WP_006199979.1
COORDINATES: similar to AA sequence:RefSeq:WP_004126135.1
COORDINATES: similar to AA sequence:RefSeq:WP_010338610.1
COORDINATES: protein motif:HMM:NF012698.2
COORDINATES: similar to AA sequence:RefSeq:WP_013533467.1
acetyl-CoA carboxylase biotin carboxylase subunit family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010913673.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611390.1
COORDINATES: similar to AA sequence:RefSeq:WP_010913734.1
COORDINATES: similar to AA sequence:RefSeq:WP_018099439.1
GO:0004068 - aspartate 1-decarboxylase activity [Evidence IEA]
GO:0006523 - alanine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002722857.1
succinyl-CoA--3-ketoacid-CoA transferase
COORDINATES: similar to AA sequence:RefSeq:WP_013850079.1
aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009797950.1
COORDINATES: similar to AA sequence:RefSeq:WP_008838199.1
COORDINATES: similar to AA sequence:RefSeq:WP_018327356.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612315.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611363.1
COORDINATES: similar to AA sequence:RefSeq:WP_014498634.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611730.1
COORDINATES: similar to AA sequence:RefSeq:WP_011970904.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010915971.1
COORDINATES: similar to AA sequence:RefSeq:WP_010915972.1
COORDINATES: similar to AA sequence:RefSeq:WP_018099442.1
COORDINATES: similar to AA sequence:RefSeq:WP_004126188.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053350.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188732.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: similar to AA sequence:RefSeq:WP_011749831.1
COORDINATES: similar to AA sequence:RefSeq:WP_046205714.1
COORDINATES: similar to AA sequence:RefSeq:WP_003575608.1
COORDINATES: similar to AA sequence:RefSeq:WP_014763321.1
COORDINATES: similar to AA sequence:RefSeq:WP_018099739.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611752.1
COORDINATES: protein motif:HMM:NF017528.2
COORDINATES: similar to AA sequence:RefSeq:WP_016557442.1
COORDINATES: similar to AA sequence:RefSeq:WP_011970372.1
COORDINATES: similar to AA sequence:RefSeq:WP_006326807.1
COORDINATES: similar to AA sequence:RefSeq:WP_015821555.1
COORDINATES: similar to AA sequence:RefSeq:WP_018099508.1
COORDINATES: protein motif:HMM:NF017760.2
COORDINATES: similar to AA sequence:RefSeq:WP_016555848.1
COORDINATES: similar to AA sequence:RefSeq:WP_013845848.1
COORDINATES: similar to AA sequence:RefSeq:WP_004128868.1
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011750033.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750040.1
COORDINATES: similar to AA sequence:RefSeq:WP_004128849.1
C45 family autoproteolytic acyltransferase/hydolase
COORDINATES: similar to AA sequence:RefSeq:WP_076611883.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875182.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533424.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533423.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533422.1
COORDINATES: similar to AA sequence:RefSeq:WP_003537515.1
GO:0015833 - peptide transport [Evidence IEA]
dipeptide ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF013206.2
COORDINATES: similar to AA sequence:RefSeq:WP_018099522.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003592691.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003532948.1
GO:0008890 - glycine C-acetyltransferase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019863927.1
COORDINATES: similar to AA sequence:RefSeq:WP_013528604.1
GO:0004474 - malate synthase activity [Evidence IEA]
GO:0006097 - glyoxylate cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010915866.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00504
glycine riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_016558771.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010970528.1
COORDINATES: similar to AA sequence:RefSeq:WP_004128902.1
COORDINATES: similar to AA sequence:RefSeq:WP_018236217.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053488.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976714.1
COORDINATES: similar to AA sequence:RefSeq:WP_017960287.1
GO:0004108 - citrate (Si)-synthase activity [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015342020.1
COORDINATES: similar to AA sequence:RefSeq:WP_010163121.1
GO:0004451 - isocitrate lyase activity [Evidence IEA]
GO:0019752 - carboxylic acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004122953.1
short-chain fatty acyl-CoA regulator family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006326751.1
COORDINATES: similar to AA sequence:RefSeq:WP_013533420.1
COORDINATES: similar to AA sequence:RefSeq:WP_012553005.1
COORDINATES: similar to AA sequence:RefSeq:WP_008876131.1
COORDINATES: similar to AA sequence:RefSeq:WP_014528068.1
COORDINATES: similar to AA sequence:RefSeq:WP_015118134.1
S-(hydroxymethyl)glutathione dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_011654719.1
COORDINATES: similar to AA sequence:RefSeq:WP_008523077.1
IucA/IucC family siderophore biosynthesis protein
COORDINATES: similar to AA sequence:RefSeq:WP_010974358.1
COORDINATES: protein motif:HMM:NF024783.2
COORDINATES: similar to AA sequence:RefSeq:WP_006952064.1
COORDINATES: protein motif:HMM:NF039805.1
COORDINATES: protein motif:HMM:NF024098.2
COORDINATES: protein motif:HMM:NF012376.2
COORDINATES: similar to AA sequence:RefSeq:WP_041684032.1
COORDINATES: similar to AA sequence:RefSeq:WP_017265661.1
COORDINATES: similar to AA sequence:RefSeq:WP_015342012.1
COORDINATES: similar to AA sequence:RefSeq:WP_018494607.1
COORDINATES: similar to AA sequence:RefSeq:WP_014857614.1
COORDINATES: similar to AA sequence:RefSeq:WP_007827581.1
COORDINATES: similar to AA sequence:RefSeq:WP_006331664.1
COORDINATES: similar to AA sequence:RefSeq:WP_017275799.1
COORDINATES: similar to AA sequence:RefSeq:WP_015926997.1
COORDINATES: similar to AA sequence:RefSeq:WP_003537795.1
COORDINATES: similar to AA sequence:RefSeq:WP_028755357.1
COORDINATES: similar to AA sequence:RefSeq:WP_018855778.1
COORDINATES: similar to AA sequence:RefSeq:WP_011512150.1
COORDINATES: similar to AA sequence:RefSeq:WP_013845260.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654537.1
COORDINATES: protein motif:HMM:NF019149.2
recombinase zinc beta ribbon domain-containing protein
COORDINATES: protein motif:HMM:NF012464.2
COORDINATES: similar to AA sequence:RefSeq:WP_011427341.1
COORDINATES: similar to AA sequence:RefSeq:WP_008878111.1
COORDINATES: similar to AA sequence:RefSeq:WP_018240952.1
COORDINATES: similar to AA sequence:RefSeq:WP_010913752.1
COORDINATES: similar to AA sequence:RefSeq:WP_003581406.1
COORDINATES: similar to AA sequence:RefSeq:WP_017274277.1
COORDINATES: similar to AA sequence:RefSeq:WP_006326809.1
COORDINATES: similar to AA sequence:RefSeq:WP_006476480.1
COORDINATES: similar to AA sequence:RefSeq:WP_006476481.1,RefSeq:WP_012976702.1
COORDINATES: similar to AA sequence:RefSeq:WP_004126090.1
COORDINATES: similar to AA sequence:RefSeq:WP_013844528.1
COORDINATES: similar to AA sequence:RefSeq:WP_006205907.1
COORDINATES: similar to AA sequence:RefSeq:WP_011982578.1
COORDINATES: similar to AA sequence:RefSeq:WP_018099525.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611470.1
COORDINATES: similar to AA sequence:RefSeq:WP_006334031.1
COORDINATES: similar to AA sequence:RefSeq:WP_018240789.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007793995.1
COORDINATES: similar to AA sequence:RefSeq:WP_012653027.1
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF027067.2
type II toxin-antitoxin system MqsA family antitoxin
COORDINATES: protein motif:HMM:NF024977.2
COORDINATES: similar to AA sequence:RefSeq:WP_018327680.1
COORDINATES: similar to AA sequence:RefSeq:WP_007563772.1
putative addiction module antidote protein
COORDINATES: similar to AA sequence:RefSeq:WP_008505629.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: protein motif:HMM:NF017011.2
COORDINATES: similar to AA sequence:RefSeq:WP_019863240.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427422.1
COORDINATES: similar to AA sequence:RefSeq:WP_007539780.1
dicarboxylate/amino acid:cation symporter
COORDINATES: similar to AA sequence:RefSeq:WP_018098980.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_008838424.1
COORDINATES: similar to AA sequence:RefSeq:WP_011970848.1
COORDINATES: similar to AA sequence:RefSeq:WP_006328784.1
COORDINATES: similar to AA sequence:RefSeq:WP_003532617.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007539150.1
COORDINATES: similar to AA sequence:RefSeq:WP_006204698.1
COORDINATES: similar to AA sequence:RefSeq:WP_004120024.1
COORDINATES: similar to AA sequence:RefSeq:WP_008838317.1
COORDINATES: similar to AA sequence:RefSeq:WP_014497728.1
COORDINATES: similar to AA sequence:RefSeq:WP_026312707.1
COORDINATES: similar to AA sequence:RefSeq:WP_011084944.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501414.1
COORDINATES: similar to AA sequence:RefSeq:WP_014989427.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516741.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011388434.1
COORDINATES: protein motif:HMM:NF013088.2
COORDINATES: similar to AA sequence:RefSeq:WP_007537361.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480500.1
COORDINATES: similar to AA sequence:RefSeq:WP_020493280.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: protein motif:HMM:NF017885.2
COORDINATES: similar to AA sequence:RefSeq:WP_014531097.1
COORDINATES: similar to AA sequence:RefSeq:WP_016556525.1
HNH endonuclease signature motif containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011512296.1
COORDINATES: similar to AA sequence:RefSeq:WP_004119783.1
DUF3991 and toprim domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015341928.1
COORDINATES: similar to AA sequence:RefSeq:WP_014762707.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803058.1
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: protein motif:HMM:NF012772.2
EAL domain-containing response regulator
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: similar to AA sequence:RefSeq:WP_007538550.1
catalyzes the transfer of a fatty acyl group onto Nod factor, beta-(1,4)-N-acetylglucosamine oligosaccharide; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003584764.1
COORDINATES: similar to AA sequence:RefSeq:WP_003575612.1
COORDINATES: similar to AA sequence:RefSeq:WP_014074468.1
GO:0015116 - sulfate transmembrane transporter activity [Evidence IEA]
GO:0008272 - sulfate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007678514.1
COORDINATES: protein motif:HMM:NF015770.2
COORDINATES: similar to AA sequence:RefSeq:WP_018068603.1
Ti-type conjugative transfer system protein TraG
COORDINATES: similar to AA sequence:RefSeq:WP_014989435.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_011654562.1
COORDINATES: similar to AA sequence:RefSeq:WP_020048127.1
Ti-type conjugative transfer relaxase TraA
COORDINATES: similar to AA sequence:RefSeq:WP_004119831.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0008233 - peptidase activity [Evidence IEA]
conjugative transfer signal peptidase TraF
COORDINATES: similar to AA sequence:RefSeq:WP_020048129.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558649.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011427447.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427448.1
COORDINATES: similar to AA sequence:RefSeq:WP_012115987.1
COORDINATES: similar to AA sequence:RefSeq:WP_018482034.1
COORDINATES: similar to AA sequence:RefSeq:WP_018097602.1
autoinducer binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013984777.1
IncP-type conjugal transfer protein TrbI
COORDINATES: similar to AA sequence:RefSeq:WP_011427454.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427455.1
GO:0009291 - unidirectional conjugation [Evidence IEA]
P-type conjugative transfer protein TrbG
COORDINATES: similar to AA sequence:RefSeq:WP_018482029.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875424.1
P-type conjugative transfer protein TrbL
COORDINATES: similar to AA sequence:RefSeq:WP_011970259.1
GO:0009292 - horizontal gene transfer [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018210390.1
P-type conjugative transfer protein TrbJ
COORDINATES: similar to AA sequence:RefSeq:WP_018098144.1
COORDINATES: similar to AA sequence:RefSeq:WP_013984785.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858032.1
COORDINATES: similar to AA sequence:RefSeq:WP_004129936.1
COORDINATES: similar to AA sequence:RefSeq:WP_007539592.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003518687.1
COORDINATES: similar to AA sequence:RefSeq:WP_015343924.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516709.1