Cupriavidus neocaledonicus isolate Cupriavidus taiwanensis STM 6160 plasmid III.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.
Submitted (17-JAN-2018) INSTITUT PASTEUR, 28 rue du Docteur Roux, 75015, Paris, France
REFSEQ INFORMATION: The reference sequence is identical to\nLT984808.1.\nThe organism was changed from 'Cupriavidus taiwanensis' to\n'Cupriavidus neocaledonicus' in July 2020.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Taxonomic-Update-Statistics-START##\nThis Genome (query) :: GCA_900250125.1\nCurrent Name :: Cupriavidus neocaledonicus\nPrevious Name :: Cupriavidus taiwanensis\nDate Updated :: 2020-07-31\nAnalysis Type :: Average Nucleotide Identity (ANI)\nAnalysis 1 (A1) :: Query vs. TYPE genome for current name\nA1 Genome (subject) :: GCA_000372525.1\nA1 Name :: Cupriavidus neocaledonicus\nA1 ANI :: 99.99%\nA1 Query Coverage :: 95.01%\nA1 Subject Coverage :: 98.54%\nAnalysis 2 (A2) :: Query vs. TYPE genome for previous name\nA2 Genome (subject) :: GCA_000069785.1\nA2 Name :: Cupriavidus taiwanensis\nA2 ANI :: 94.12%\nA2 Query Coverage :: 80.68%\nA2 Subject Coverage :: 87.49%\n##Taxonomic-Update-Statistics-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/29/2023 03:08:13\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,415\nCDSs (total) :: 6,331\nGenes (coding) :: 6,135\nCDSs (with protein) :: 6,135\nGenes (RNA) :: 84\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 64\nncRNAs :: 5\nPseudo Genes (total) :: 196\nCDSs (without protein) :: 196\nPseudo Genes (ambiguous residues) :: 0 of 196\nPseudo Genes (frameshifted) :: 100 of 196\nPseudo Genes (incomplete) :: 136 of 196\nPseudo Genes (internal stop) :: 25 of 196\nPseudo Genes (multiple problems) :: 55 of 196\n##Genome-Annotation-Data-END##
COORDINATES: protein motif:HMM:NF013704.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012354402.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014442.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF012403.2
COORDINATES: similar to AA sequence:RefSeq:WP_011488770.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003551146.1
COORDINATES: protein motif:HMM:NF023835.2
SNF2 helicase-associated domain-containing protein
COORDINATES: protein motif:HMM:TIGR02679.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354408.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354409.1
COORDINATES: similar to AA sequence:RefSeq:WP_010097931.1
COORDINATES: similar to AA sequence:RefSeq:WP_011237448.1
COORDINATES: protein motif:HMM:NF013862.2
GO:0006629 - lipid metabolic process [Evidence IEA]
patatin-like phospholipase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016347915.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354420.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354424.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354425.1
COORDINATES: similar to AA sequence:RefSeq:WP_013959180.1
COORDINATES: similar to AA sequence:RefSeq:WP_008645535.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354429.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012354430.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_020202524.1
COORDINATES: similar to AA sequence:RefSeq:WP_020202525.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_018003928.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354435.1
COORDINATES: similar to AA sequence:RefSeq:WP_018309661.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354437.1
SbcC/MukB-like Walker B domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012354438.1
1.5.4 : Fatty acid and phosphatidic acid
COORDINATES: similar to AA sequence:RefSeq:WP_006483704.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011295940.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012351348.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012354672.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011296123.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF017528.2
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_012354446.1
COORDINATES: similar to AA sequence:RefSeq:WP_012405842.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354448.1
COORDINATES: similar to AA sequence:RefSeq:WP_018004395.1
4.1.B : Beta barrel porins (The Outer Membrane Porin (OMP) Functional Superfamily)
COORDINATES: similar to AA sequence:RefSeq:WP_013956816.1
COORDINATES: similar to AA sequence:RefSeq:WP_009771063.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012354454.1
PliI family lysozyme inhibitor of I-type lysozyme
COORDINATES: similar to AA sequence:RefSeq:WP_012354456.1
COORDINATES: similar to AA sequence:RefSeq:WP_018003706.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354459.1
cold shock and DUF1294 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020202023.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011481644.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012354461.1
SDR family NAD(P)-dependent oxidoreductase
1.1.2.1 : Degradation of short-chain fatty acids
COORDINATES: similar to AA sequence:RefSeq:WP_011295726.1
GO:0003985 - acetyl-CoA C-acetyltransferase activity [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011295727.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012354464.1
COORDINATES: similar to AA sequence:RefSeq:WP_011295729.1
tannase/feruloyl esterase family alpha/beta hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_015751077.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: protein motif:HMM:NF025079.2
COORDINATES: similar to AA sequence:RefSeq:WP_012354468.1
IS5-like element ISRta5 family transposase
COORDINATES: protein motif:HMM:NF013676.2
COORDINATES: similar to AA sequence:RefSeq:WP_011295755.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354470.1
GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018310023.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354471.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]
SOS response-associated peptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012354472.1
COORDINATES: similar to AA sequence:RefSeq:WP_020191009.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354474.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354475.1
COORDINATES: similar to AA sequence:RefSeq:WP_018310027.1
GO:0051782 - negative regulation of cell division [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
translesion DNA synthesis-associated protein ImuA
COORDINATES: similar to AA sequence:RefSeq:WP_007586642.1
COORDINATES: similar to AA sequence:RefSeq:WP_012328534.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354479.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354480.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354482.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354483.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0140658 - ATP-dependent chromatin remodeler activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF039808.1
COORDINATES: similar to AA sequence:RefSeq:WP_018006274.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354488.1
multiubiquitin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012354489.1
COORDINATES: similar to AA sequence:RefSeq:WP_008126234.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354491.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012354492.1
COORDINATES: similar to AA sequence:RefSeq:WP_018003838.1
COORDINATES: similar to AA sequence:RefSeq:WP_020067064.1
COORDINATES: similar to AA sequence:RefSeq:WP_011749831.1
COORDINATES: similar to AA sequence:RefSeq:WP_009906954.1
COORDINATES: similar to AA sequence:RefSeq:WP_009238037.1
COORDINATES: similar to AA sequence:RefSeq:WP_006762363.1
COORDINATES: similar to AA sequence:RefSeq:WP_012435719.1
COORDINATES: similar to AA sequence:RefSeq:WP_013959205.1
COORDINATES: similar to AA sequence:RefSeq:WP_013954372.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354510.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012354512.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354515.1
COORDINATES: similar to AA sequence:RefSeq:WP_018310735.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354517.1
COORDINATES: similar to AA sequence:RefSeq:WP_011514882.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354519.1
COORDINATES: similar to AA sequence:RefSeq:WP_013436335.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354521.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354522.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354523.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354524.1
COORDINATES: similar to AA sequence:RefSeq:WP_017234492.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354526.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354527.1
COORDINATES: similar to AA sequence:RefSeq:WP_011239938.1
COORDINATES: similar to AA sequence:RefSeq:WP_011239937.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012354529.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354530.1
COORDINATES: similar to AA sequence:RefSeq:WP_013700010.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354532.1
COORDINATES: similar to AA sequence:RefSeq:WP_000098295.1
COORDINATES: similar to AA sequence:RefSeq:WP_008648655.1
Lar family restriction alleviation protein
COORDINATES: protein motif:HMM:NF013395.2
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
3.1.3.1 : Translation attenuation and efficiency
COORDINATES: similar to AA sequence:RefSeq:WP_020747038.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354539.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354540.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354541.1
COORDINATES: similar to AA sequence:RefSeq:WP_008649399.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354543.1
COORDINATES: similar to AA sequence:RefSeq:WP_011514906.1
GO:0003896 - DNA primase activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
primase-helicase zinc-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012354545.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354546.1
COORDINATES: similar to AA sequence:RefSeq:WP_008649407.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354548.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354549.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354550.1
GO:0045893 - positive regulation of DNA-templated transcription [Evidence IEA]; GO:1902208 - regulation of bacterial-type flagellum assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076612276.1
ISL3-like element ISRta1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_011301218.1
COORDINATES: similar to AA sequence:RefSeq:WP_018314502.1
4.3.A.7 : The Type IV (Conjugal DNA-Protein Transfer) Secretory Pathway (IVSP) Family
COORDINATES: similar to AA sequence:RefSeq:WP_009242043.1
shufflon system plasmid conjugative transfer pilus tip adhesin PilV
COORDINATES: similar to AA sequence:RefSeq:WP_018314034.1
COORDINATES: similar to AA sequence:RefSeq:WP_018314033.1
COORDINATES: similar to AA sequence:RefSeq:WP_004636268.1
type II secretion system F family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012354559.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354560.1
COORDINATES: protein motif:HMM:TIGR03021.1
GO:0009297 - pilus assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012354562.1
COORDINATES: similar to AA sequence:RefSeq:WP_018314027.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354564.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012354565.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_008649449.1
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008649450.1
COORDINATES: similar to AA sequence:RefSeq:WP_008649451.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354569.1
COORDINATES: similar to AA sequence:RefSeq:WP_011239902.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354571.1
COORDINATES: similar to AA sequence:RefSeq:WP_008645668.1
type IV secretory pathway, conjugal transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_012354573.1
VirB4 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_012354574.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354575.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354576.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354577.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0015074 - DNA integration [Evidence IEA]
Members of this protein family are the putative conjugative coupling factor, TraD, as the term is used for the SXT and TOL plasmid systems; Derived by automated computational analysis using gene prediction method: Protein Homology.
conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_012354578.1
COORDINATES: similar to AA sequence:RefSeq:WP_011514911.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354580.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354581.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354582.1
COORDINATES: similar to AA sequence:RefSeq:WP_018311803.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354611.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354588.1
4.8.A.1 : The Membrane Fusion Protein (MFP) Family
COORDINATES: similar to AA sequence:RefSeq:WP_012734049.1
GO:0030253 - protein secretion by the type I secretion system [Evidence IEA]
HlyD family type I secretion periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012354590.1
COORDINATES: similar to AA sequence:RefSeq:WP_013801313.1
COORDINATES: similar to AA sequence:RefSeq:WP_012218039.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354595.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611214.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012406798.1
COORDINATES: similar to AA sequence:RefSeq:WP_013104584.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612008.1
COORDINATES: similar to AA sequence:RefSeq:WP_012402562.1
COORDINATES: similar to AA sequence:RefSeq:WP_004959022.1
COORDINATES: similar to AA sequence:RefSeq:WP_010099870.1
GO:0008660 - 1-aminocyclopropane-1-carboxylate deaminase activity [Evidence IEA]
GO:0042217 - 1-aminocyclopropane-1-carboxylate catabolic process [Evidence IEA]
1-aminocyclopropane-1-carboxylate deaminase
COORDINATES: similar to AA sequence:RefSeq:WP_015914407.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018311111.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406779.1
ankyrin repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013094506.1
4.2.A.4 : The Cation Diffusion Facilitator (CDF) Family
5.6.2 : Detoxification (xenobiotic metabolism)
COORDINATES: similar to AA sequence:RefSeq:WP_012354613.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_013094498.1
COORDINATES: similar to AA sequence:RefSeq:WP_042044074.1
COORDINATES: similar to AA sequence:RefSeq:WP_042551150.1
COORDINATES: similar to AA sequence:RefSeq:WP_011235908.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
transposase DNA-binding-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013592113.1
ABC transporter substrate-binding protein
3.1.2.4.3 : Two-component regulatory systems (external signal)
COORDINATES: similar to AA sequence:RefSeq:WP_020070400.1
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
3.3.1 : Operon (regulation of one operon)
COORDINATES: similar to AA sequence:RefSeq:WP_018435039.1
COORDINATES: similar to AA sequence:RefSeq:WP_012353582.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354629.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354632.1
COORDINATES: similar to AA sequence:RefSeq:WP_013958496.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_013958495.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354635.1
COORDINATES: similar to AA sequence:RefSeq:WP_013954484.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008647613.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354638.1
isoprenylcysteine carboxylmethyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012354639.1
COORDINATES: similar to AA sequence:RefSeq:WP_020677359.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
formate/nitrite transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011695117.1
COORDINATES: similar to AA sequence:RefSeq:WP_011002488.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013091643.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_012354642.1
COORDINATES: similar to AA sequence:RefSeq:WP_012416656.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_012416655.1
4.2.A.21 : The Solute:Sodium Symporter (SSS) Family
COORDINATES: similar to AA sequence:RefSeq:WP_012354643.1
1.5.3.9 : Riboflavin (Vitamin B2), FAD, FMN
COORDINATES: similar to AA sequence:RefSeq:WP_012354644.1
GO:0009349 - riboflavin synthase complex [Evidence IEA]
GO:0000906 - 6,7-dimethyl-8-ribityllumazine synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008652002.1
COORDINATES: similar to AA sequence:RefSeq:WP_007152232.1
COORDINATES: similar to AA sequence:RefSeq:WP_011239930.1
IS21-like element ISRme9 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_011239931.1
IS21-like element ISRme9 family helper ATPase IstB
COORDINATES: similar to AA sequence:RefSeq:WP_011052967.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611153.1
programmed frameshift; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014029709.1
COORDINATES: similar to AA sequence:RefSeq:WP_018315478.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798211.1
COORDINATES: similar to AA sequence:RefSeq:WP_015004742.1
GO:0004020 - adenylylsulfate kinase activity [Evidence IEA]
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018319389.1
GO:0003824 - catalytic activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010913819.1
GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0009877 - nodulation [Evidence IEA]; GO:0009312 - oligosaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019863255.1
COORDINATES: similar to AA sequence:RefSeq:WP_018434994.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354663.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247215.1
nodulation factor ABC transporter ATP-binding protein NodI
COORDINATES: similar to AA sequence:RefSeq:WP_018315485.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015633487.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018315486.1
COORDINATES: similar to AA sequence:RefSeq:WP_015004755.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0009399 - nitrogen fixation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
nif-specific transcriptional activator NifA
COORDINATES: similar to AA sequence:RefSeq:WP_076612052.1
COORDINATES: similar to AA sequence:RefSeq:WP_018312072.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094478.1
GO:0009399 - nitrogen fixation [Evidence IEA]
nitrogenase iron-molybdenum cofactor biosynthesis protein NifE
COORDINATES: similar to AA sequence:RefSeq:WP_007177224.1
nitrogenase iron-molybdenum cofactor biosynthesis protein NifN
COORDINATES: similar to AA sequence:RefSeq:WP_011880153.1
GO:0051540 - metal cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF016938.2
COORDINATES: similar to AA sequence:RefSeq:WP_012406761.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094483.1
GO:0030151 - molybdenum ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018423241.1
COORDINATES: similar to AA sequence:RefSeq:WP_018423212.1
4Fe-4S dicluster domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011880113.1
COORDINATES: similar to AA sequence:RefSeq:WP_018309852.1
electron transfer flavoprotein subunit alpha/FixB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007177260.1
electron transfer flavoprotein subunit beta/FixA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012354683.1
nitrogenase-stabilizing/protective protein NifW
COORDINATES: similar to AA sequence:RefSeq:WP_012354684.1
COORDINATES: similar to AA sequence:RefSeq:WP_019572749.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
nitrogenase cofactor biosynthesis protein NifB
COORDINATES: similar to AA sequence:RefSeq:WP_020202109.1
COORDINATES: similar to AA sequence:RefSeq:WP_014725855.1
COORDINATES: similar to AA sequence:RefSeq:WP_007177241.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094501.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094509.1
GO:0016611 - iron-iron nitrogenase complex [Evidence IEA]; GO:0016612 - molybdenum-iron nitrogenase complex [Evidence IEA]; GO:0016613 - vanadium-iron nitrogenase complex [Evidence IEA]
GO:0016163 - nitrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007177229.1
GO:0016612 - molybdenum-iron nitrogenase complex [Evidence IEA]
nitrogenase molybdenum-iron protein alpha chain
COORDINATES: similar to AA sequence:RefSeq:WP_017773471.1
nitrogenase molybdenum-iron protein subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_011487047.1
COORDINATES: similar to AA sequence:RefSeq:WP_020832173.1
COORDINATES: protein motif:HMM:NF013828.2
COORDINATES: similar to AA sequence:RefSeq:WP_009491838.1
COORDINATES: similar to AA sequence:RefSeq:WP_020286125.1
GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF004508.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
GO:0016310 - phosphorylation [Evidence IEA]
PEP/pyruvate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012353590.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
4.2.A.6 : The Resistance-Nodulation-Cell Division (RND) Superfamily
COORDINATES: similar to AA sequence:RefSeq:WP_018310713.1
COORDINATES: similar to AA sequence:RefSeq:WP_018310996.1
COORDINATES: similar to AA sequence:RefSeq:WP_012213865.1
COORDINATES: similar to AA sequence:RefSeq:WP_009465831.1
COORDINATES: similar to AA sequence:RefSeq:WP_011402070.1
COORDINATES: similar to AA sequence:RefSeq:WP_009453349.1,RefSeq:WP_011001645.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558123.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611183.1
COORDINATES: similar to AA sequence:RefSeq:WP_008350841.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
prolyl oligopeptidase family serine peptidase
COORDINATES: similar to AA sequence:RefSeq:WP_012354717.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354718.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354720.1
COORDINATES: similar to AA sequence:RefSeq:WP_019451427.1
COORDINATES: similar to AA sequence:RefSeq:WP_006482428.1
COORDINATES: similar to AA sequence:RefSeq:WP_012700460.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354724.1
COORDINATES: similar to AA sequence:RefSeq:WP_011295735.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_011295736.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612082.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354727.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008645401.1
COORDINATES: similar to AA sequence:RefSeq:WP_012367365.1
COORDINATES: similar to AA sequence:RefSeq:WP_006482370.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011001781.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354735.1
COORDINATES: similar to AA sequence:RefSeq:WP_012606213.1
COORDINATES: similar to AA sequence:RefSeq:WP_012430592.1
Toluene-4-monooxygenase system protein A
COORDINATES: similar to AA sequence:RefSeq:WP_012430593.1
toluene-4-monooxygenase system B family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011301785.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012430595.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354742.1
aromatic/alkene monooxygenase hydroxylase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_012354743.1
COORDINATES: similar to AA sequence:RefSeq:WP_011695115.1
COORDINATES: similar to AA sequence:RefSeq:WP_015004782.1
COORDINATES: protein motif:HMM:NF013730.2
COORDINATES: protein motif:HMM:NF012428.2
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_012354594.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182862.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354751.1
type II toxin-antitoxin system MqsA family antitoxin
COORDINATES: protein motif:HMM:NF014599.2
GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0051262 - protein tetramerization [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007182320.1
COORDINATES: similar to AA sequence:RefSeq:WP_019104956.1
COORDINATES: similar to AA sequence:RefSeq:WP_011154075.1
IS66 family transposase zinc-finger binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000998048.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558259.1
COORDINATES: protein motif:HMM:NF012754.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611313.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_011872570.1
COORDINATES: similar to AA sequence:RefSeq:WP_008652249.1
COORDINATES: similar to AA sequence:RefSeq:WP_016539601.1
5.3 : Motility (incl. chemotaxis, energytaxis, aerotaxis, redoxtaxis)
COORDINATES: similar to AA sequence:RefSeq:WP_012354764.1
COORDINATES: similar to AA sequence:RefSeq:WP_006026414.1
COORDINATES: similar to AA sequence:RefSeq:WP_047215127.1
COORDINATES: similar to AA sequence:RefSeq:WP_006482547.1
COORDINATES: similar to AA sequence:RefSeq:WP_008156893.1
COORDINATES: similar to AA sequence:RefSeq:WP_012535980.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612229.1
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_008063481.1
COORDINATES: similar to AA sequence:RefSeq:WP_019574237.1
COORDINATES: similar to AA sequence:RefSeq:WP_007829154.1
COORDINATES: similar to AA sequence:RefSeq:WP_012404184.1
COORDINATES: protein motif:HMM:NF012371.2
serine hydrolase domain-containing protein
4.2.A.1 : The Major Facilitator Superfamily (MFS)
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: protein motif:HMM:NF012873.2
COORDINATES: protein motif:HMM:NF012935.2
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
GMC family oxidoreductase N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF017050.2
1.6 : Macromolecules (cellular constituent) biosynthesis
COORDINATES: protein motif:HMM:NF020918.2
Members of this family are phasins (small proteins associated with inclusions such as PHA granules). Note that several different families of phasins have been named PhaP despite very little sequence similarity to each other; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017332409.1
COORDINATES: similar to AA sequence:RefSeq:WP_017875972.1
COORDINATES: similar to AA sequence:RefSeq:WP_008838346.1
COORDINATES: similar to AA sequence:RefSeq:WP_018310391.1
COORDINATES: similar to AA sequence:RefSeq:WP_011515952.1
COORDINATES: similar to AA sequence:RefSeq:WP_011235976.1
COORDINATES: similar to AA sequence:RefSeq:WP_018420311.1
COORDINATES: similar to AA sequence:RefSeq:WP_018312679.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012584370.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018311577.1
COORDINATES: similar to AA sequence:RefSeq:WP_004197697.1
COORDINATES: similar to AA sequence:RefSeq:WP_004544955.1
COORDINATES: similar to AA sequence:RefSeq:WP_020228336.1
COORDINATES: similar to AA sequence:RefSeq:WP_013833427.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354819.1
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_012354821.1
COORDINATES: similar to AA sequence:RefSeq:WP_013958722.1
COORDINATES: protein motif:HMM:NF023701.2
GSU2403 family nucleotidyltransferase fold protein
COORDINATES: similar to AA sequence:RefSeq:WP_012354823.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354824.1
COORDINATES: similar to AA sequence:RefSeq:WP_013958804.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012354826.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_012354827.1
4.8.A : Accessory Factors Involved in Transport
COORDINATES: similar to AA sequence:RefSeq:WP_008651836.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354829.1
nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012354830.1
COORDINATES: similar to AA sequence:RefSeq:WP_004632826.1
COORDINATES: similar to AA sequence:RefSeq:WP_013343500.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354834.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354835.1
COORDINATES: similar to AA sequence:RefSeq:WP_007736805.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354839.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: similar to AA sequence:RefSeq:WP_013517143.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354841.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354843.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354844.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354845.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354846.1
GO:0008794 - arsenate reductase (glutaredoxin) activity [Evidence IEA]
This arsenate reductase requires both glutathione and glutaredoxin to convert arsenate to arsenite, after which the efflux transporter formed by ArsA and ArsB can extrude the arsenite from the cell, providing resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.
4.2.A. : Porters (Uni-, Sym- and Antiporters)
COORDINATES: similar to AA sequence:RefSeq:WP_012354847.1
GO:0008490 - arsenite secondary active transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012354848.1
COORDINATES: similar to AA sequence:RefSeq:WP_012435825.1
COORDINATES: similar to AA sequence:RefSeq:WP_013209975.1
ArsI/CadI family heavy metal resistance metalloenzyme
COORDINATES: similar to AA sequence:RefSeq:WP_008645248.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: protein motif:HMM:NF021471.2
COORDINATES: similar to AA sequence:RefSeq:WP_011296125.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354854.1
COORDINATES: similar to AA sequence:RefSeq:WP_011296127.1
COORDINATES: nucleotide motif:Rfam:14.4:RF01850
betaproteobacterial-type; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_012354856.1
COORDINATES: protein motif:HMM:NF024700.2
COORDINATES: similar to AA sequence:RefSeq:WP_012354862.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354860.1
H-NS family nucleoid-associated regulatory protein
COORDINATES: similar to AA sequence:RefSeq:WP_012354861.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354863.1
COORDINATES: similar to AA sequence:RefSeq:WP_011397286.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354865.1