Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.
Complete genome sequence of Pseudomonas frederiksbergensis ERDD5:01 revealed genetic bases for survivability at high altitude ecosystem and bioprospection potential
Submitted (28-OCT-2016) Biotechnology, CSIR-Institute of Himalayan Bioresource Technology, Rakshak Kumar, Palampur, Himachal Pradesh 176061, India
REFSEQ INFORMATION: The reference sequence is identical to\nCP017887.1.\nBacteria and source DNA available from This strain is available\nfrom the Microbial Culture Collection at National Centre for Cell\nScience, Pune, India with accession number MCC 2990 and also\navailable with the host institution.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 26-OCT-2016\nAssembly Method :: Hierarchical Genome Assembly Process v. 3\nAssembly Name :: Hierarchical Genome Assembly Process 3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 104.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/18/2022 17:05:44\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,821\nCDSs (total) :: 5,723\nGenes (coding) :: 5,512\nCDSs (with protein) :: 5,512\nGenes (RNA) :: 98\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 70\nncRNAs :: 6\nPseudo Genes (total) :: 211\nCDSs (without protein) :: 211\nPseudo Genes (ambiguous residues) :: 0 of 211\nPseudo Genes (frameshifted) :: 92 of 211\nPseudo Genes (incomplete) :: 139 of 211\nPseudo Genes (internal stop) :: 17 of 211\nPseudo Genes (multiple problems) :: 34 of 211\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_076612095.1
GO:0015074 - DNA integration [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
DDE-type integrase/transposase/recombinase
COORDINATES: protein motif:HMM:NF022429.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611385.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011536252.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020795164.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017901624.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF016232.2
COORDINATES: similar to AA sequence:RefSeq:WP_020294207.1
COORDINATES: protein motif:HMM:NF012920.2
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: protein motif:HMM:NF013015.2
COORDINATES: protein motif:HMM:NF023227.2
COORDINATES: protein motif:HMM:NF039622.1
COORDINATES: protein motif:HMM:NF037161.2
COORDINATES: protein motif:HMM:NF013618.2
lytic transglycosylase domain-containing protein
COORDINATES: protein motif:HMM:NF017124.2
GO:0045893 - positive regulation of DNA-templated transcription [Evidence IEA]; GO:1902208 - regulation of bacterial-type flagellum assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF024642.2
COORDINATES: similar to AA sequence:RefSeq:WP_019366700.1
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:NF017300.2
GO:0006274 - DNA replication termination [Evidence IEA]
DNA replication terminus site-binding protein
COORDINATES: protein motif:HMM:NF019843.2
GO:0046872 - metal ion binding [Evidence IEA]
SEC-C metal-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010466173.1
COORDINATES: similar to AA sequence:RefSeq:WP_010466175.1
COORDINATES: similar to AA sequence:RefSeq:WP_008076548.1
COORDINATES: protein motif:HMM:NF019530.2
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF017892.2
COORDINATES: protein motif:HMM:TIGR02740.1
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF024755.2
COORDINATES: protein motif:HMM:NF039307.1
COORDINATES: similar to AA sequence:RefSeq:WP_004577579.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007250562.1
COORDINATES: similar to AA sequence:RefSeq:WP_007250561.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019364595.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611532.1
COORDINATES: similar to AA sequence:RefSeq:WP_007720244.1
COORDINATES: protein motif:HMM:TIGR03696.1
RHS repeat-associated core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003260502.1
COORDINATES: similar to AA sequence:RefSeq:WP_016705040.1
type VI secretion system tip protein VgrG
COORDINATES: similar to AA sequence:RefSeq:NP_248954.1
Hcp family type VI secretion system effector
COORDINATES: similar to AA sequence:RefSeq:WP_003701917.1
COORDINATES: protein motif:HMM:NF017973.2
COORDINATES: protein motif:HMM:NF022792.2
COORDINATES: similar to AA sequence:RefSeq:WP_010466597.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03033.1
COORDINATES: protein motif:HMM:NF015776.2
COORDINATES: similar to AA sequence:RefSeq:WP_015886130.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF011458.0
conjugal transfer mating pair stabilization protein TraN
COORDINATES: similar to AA sequence:RefSeq:WP_016969582.1
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: protein motif:HMM:NF021209.2
TrbC family F-type conjugative pilus assembly protein
COORDINATES: protein motif:HMM:NF021981.2
COORDINATES: similar to AA sequence:RefSeq:WP_010466577.1
COORDINATES: protein motif:HMM:NF024498.2
COORDINATES: protein motif:HMM:NF012211.1
COORDINATES: similar to AA sequence:RefSeq:WP_017085227.1
TraA family conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_000647304.1
COORDINATES: similar to AA sequence:RefSeq:WP_010466564.1
type-F conjugative transfer system secretin TraK
COORDINATES: protein motif:HMM:NF017152.2
TraE/TraK family type IV conjugative transfer system protein
COORDINATES: similar to AA sequence:RefSeq:WP_010466560.1
type IV conjugative transfer system protein TraL
COORDINATES: protein motif:HMM:NF024853.2
COORDINATES: similar to AA sequence:RefSeq:WP_010466556.1
COORDINATES: similar to AA sequence:RefSeq:WP_010466552.1
GO:0003674 - molecular_function [Evidence IEA]
Members of this protein family are the putative conjugative coupling factor, TraD, as the term is used for the SXT and TOL plasmid systems; Derived by automated computational analysis using gene prediction method: Protein Homology.
conjugative transfer system coupling protein TraD
COORDINATES: protein motif:HMM:NF019153.2
COORDINATES: similar to AA sequence:RefSeq:WP_013531590.1
COORDINATES: similar to AA sequence:RefSeq:WP_003283978.1
GO:0006402 - mRNA catabolic process [Evidence IEA]; GO:0006109 - regulation of carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010566329.1
COORDINATES: similar to AA sequence:RefSeq:WP_007944676.1
COORDINATES: protein motif:HMM:NF013311.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
topoisomerase DNA-binding C4 zinc finger domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000811659.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025448.2
COORDINATES: similar to AA sequence:RefSeq:WP_012700946.1
COORDINATES: similar to AA sequence:RefSeq:WP_003457967.1
GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF037144.2
COORDINATES: similar to AA sequence:RefSeq:WP_019412142.1
COORDINATES: protein motif:HMM:NF024898.2
COORDINATES: protein motif:HMM:NF012745.2
COORDINATES: similar to AA sequence:RefSeq:WP_016974350.1
COORDINATES: protein motif:HMM:NF018644.2
COORDINATES: protein motif:HMM:NF025073.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006156674.1
COORDINATES: similar to AA sequence:RefSeq:WP_005787754.1
COORDINATES: similar to AA sequence:RefSeq:WP_004196569.1
COORDINATES: similar to AA sequence:RefSeq:WP_015268962.1
type II toxin-antitoxin system ChpB family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008054961.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003407151.1
COORDINATES: similar to AA sequence:RefSeq:WP_011998898.1
COORDINATES: protein motif:HMM:NF013658.2
GO:0003824 - catalytic activity [Evidence IEA]
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010672991.1
COORDINATES: protein motif:HMM:NF025085.2
COORDINATES: similar to AA sequence:RefSeq:WP_018245386.1
COORDINATES: similar to AA sequence:RefSeq:WP_019694364.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004575763.1
COORDINATES: similar to AA sequence:RefSeq:WP_004828551.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: similar to AA sequence:RefSeq:WP_010955146.1
COORDINATES: similar to AA sequence:RefSeq:WP_006205292.1
COORDINATES: similar to AA sequence:RefSeq:WP_006484960.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611769.1
COORDINATES: protein motif:HMM:NF017528.2
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_002554699.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: protein motif:HMM:NF014430.2
COORDINATES: similar to AA sequence:RefSeq:NP_253459.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003240518.1
COORDINATES: similar to AA sequence:RefSeq:WP_011312835.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000592771.1
GO:0004096 - catalase activity [Evidence IEA]; GO:0004601 - peroxidase activity [Evidence IEA]
GO:0006979 - response to oxidative stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007973173.1
COORDINATES: similar to AA sequence:RefSeq:WP_007973171.1
COORDINATES: similar to AA sequence:RefSeq:WP_008436711.1
GO:0015558 - secondary active p-aminobenzoyl-glutamate transmembrane transporter activity [Evidence IEA]
GO:1902604 - p-aminobenzoyl-glutamate transmembrane transport [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007973167.1
GO:0016787 - hydrolase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017336428.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017736614.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003449170.1
COORDINATES: similar to AA sequence:RefSeq:WP_015372022.1
COORDINATES: protein motif:HMM:NF040101.1
COORDINATES: similar to AA sequence:RefSeq:WP_007992487.1
COORDINATES: similar to AA sequence:RefSeq:WP_008174154.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008174155.1
COORDINATES: similar to AA sequence:RefSeq:WP_004420416.1
COORDINATES: similar to AA sequence:RefSeq:WP_005791546.1
COORDINATES: similar to AA sequence:RefSeq:WP_003291452.1
COORDINATES: similar to AA sequence:RefSeq:WP_010562624.1
COORDINATES: similar to AA sequence:RefSeq:WP_003150507.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003193379.1
COORDINATES: similar to AA sequence:RefSeq:WP_003189514.1
COORDINATES: similar to AA sequence:RefSeq:WP_003193380.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077862.1
COORDINATES: similar to AA sequence:RefSeq:WP_008084999.1
GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018434195.1
COORDINATES: similar to AA sequence:RefSeq:WP_009049945.1
COORDINATES: similar to AA sequence:RefSeq:WP_003160993.1
COORDINATES: similar to AA sequence:RefSeq:WP_016561496.1
COORDINATES: similar to AA sequence:RefSeq:WP_004346776.1
COORDINATES: similar to AA sequence:RefSeq:WP_009049942.1
COORDINATES: protein motif:HMM:NF012427.2
COORDINATES: similar to AA sequence:RefSeq:WP_002555606.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016499127.1
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010221796.1
COORDINATES: similar to AA sequence:RefSeq:WP_017939246.1
COORDINATES: similar to AA sequence:RefSeq:WP_003299778.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_009051582.1
COORDINATES: similar to AA sequence:RefSeq:WP_007934555.1
COORDINATES: similar to AA sequence:RefSeq:NP_250360.1
type VI secretion system membrane subunit TssM
COORDINATES: similar to AA sequence:RefSeq:WP_007934552.1
type IVB secretion system protein IcmH/DotU
COORDINATES: similar to AA sequence:RefSeq:NP_250358.1
type VI secretion system baseplate subunit TssK
COORDINATES: similar to AA sequence:RefSeq:WP_008150089.1
type VI secretion system lipoprotein TssJ
COORDINATES: similar to AA sequence:RefSeq:WP_008078713.1
type VI secretion system-associated FHA domain protein TagH
COORDINATES: similar to AA sequence:RefSeq:NP_250355.1
COORDINATES: similar to AA sequence:RefSeq:WP_008073441.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma 54-interacting transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007934547.1
GO:0033104 - type VI protein secretion system complex [Evidence IEA]
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_250352.1
type VI secretion system baseplate subunit TssG
COORDINATES: similar to AA sequence:RefSeq:WP_019650073.1
type VI secretion system baseplate subunit TssF
COORDINATES: similar to AA sequence:RefSeq:NP_250350.1
type VI secretion system baseplate subunit TssE
COORDINATES: similar to AA sequence:RefSeq:NP_250349.1
type VI secretion system contractile sheath large subunit
COORDINATES: similar to AA sequence:RefSeq:NP_250348.1
type VI secretion system contractile sheath small subunit
COORDINATES: similar to AA sequence:RefSeq:NP_250347.1
COORDINATES: similar to AA sequence:RefSeq:WP_011104583.1
COORDINATES: similar to AA sequence:RefSeq:WP_012076460.1
COORDINATES: similar to AA sequence:RefSeq:WP_015503224.1
COORDINATES: similar to AA sequence:RefSeq:WP_009876146.1
COORDINATES: similar to AA sequence:RefSeq:WP_019361339.1
COORDINATES: similar to AA sequence:RefSeq:WP_019726433.1
COORDINATES: similar to AA sequence:RefSeq:WP_016393519.1
COORDINATES: similar to AA sequence:RefSeq:WP_007832506.1
COORDINATES: similar to AA sequence:RefSeq:WP_004306461.1
COORDINATES: similar to AA sequence:RefSeq:WP_015144325.1
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: similar to AA sequence:RefSeq:WP_003289819.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010221080.1
GO:0015385 - sodium:proton antiporter activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01730.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_019933344.1
COORDINATES: similar to AA sequence:RefSeq:WP_009050098.1
COORDINATES: similar to AA sequence:RefSeq:WP_008145881.1
GO:0005451 - monovalent cation:proton antiporter activity [Evidence IEA]
GO:0006812 - cation transport [Evidence IEA]; GO:1902600 - proton transmembrane transport [Evidence IEA]
monovalent cation:proton antiporter-2 (CPA2) family protein
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: protein motif:HMM:NF020252.2
COORDINATES: similar to AA sequence:RefSeq:WP_008154655.1
COORDINATES: similar to AA sequence:RefSeq:WP_008031987.1
PleD family two-component system response regulator
COORDINATES: protein motif:HMM:NF024831.2
COORDINATES: protein motif:HMM:NF024968.2
COORDINATES: similar to AA sequence:RefSeq:WP_011794115.1
GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006529 - asparagine biosynthetic process [Evidence IEA]
asparagine synthase (glutamine-hydrolyzing)
COORDINATES: protein motif:HMM:NF018696.2
COORDINATES: protein motif:HMM:NF025877.2
COORDINATES: protein motif:HMM:NF013245.2
COORDINATES: similar to AA sequence:RefSeq:WP_010929613.1
GO:0008761 - UDP-N-acetylglucosamine 2-epimerase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)
COORDINATES: similar to AA sequence:RefSeq:WP_010929614.1
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011616315.1
COORDINATES: similar to AA sequence:RefSeq:NP_251848.1
COORDINATES: similar to AA sequence:RefSeq:WP_013692557.1
UDP-N-acetyl-D-glucosamine 6-dehydrogenase
COORDINATES: protein motif:HMM:NF019826.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012698.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005286933.1
COORDINATES: protein motif:HMM:NF023351.2
inverse autotransporter beta domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006391060.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_008569591.1
COORDINATES: similar to AA sequence:RefSeq:WP_014854334.1
GO:0004474 - malate synthase activity [Evidence IEA]
GO:0006097 - glyoxylate cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017676459.1
COORDINATES: similar to AA sequence:RefSeq:WP_003242231.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018928040.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_254042.1
GO:0009339 - glycolate oxidase complex [Evidence IEA]
GO:0003973 - (S)-2-hydroxy-acid oxidase activity [Evidence IEA]; GO:0071949 - FAD binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011911666.1
COORDINATES: similar to AA sequence:RefSeq:NP_490548.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012247404.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004304943.1
COORDINATES: similar to AA sequence:RefSeq:WP_008060004.1
type VI secretion system ImpA family N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008375180.1
COORDINATES: similar to AA sequence:RefSeq:WP_017703006.1
COORDINATES: similar to AA sequence:RefSeq:WP_005917673.1
COORDINATES: similar to AA sequence:RefSeq:WP_021140576.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008954096.1
COORDINATES: similar to AA sequence:RefSeq:WP_010224001.1
COORDINATES: similar to AA sequence:RefSeq:WP_017936880.1
COORDINATES: protein motif:HMM:NF019310.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017936882.1
COORDINATES: similar to AA sequence:RefSeq:WP_003291972.1
COORDINATES: similar to AA sequence:RefSeq:WP_003291971.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017936885.1
COORDINATES: similar to AA sequence:RefSeq:WP_009394229.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
4-hydroxyphenylacetate catabolism regulatory protein HpaA
COORDINATES: similar to AA sequence:RefSeq:NP_252824.1
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
homoprotocatechuate degradation operon regulator HpaR
COORDINATES: similar to AA sequence:RefSeq:WP_018927924.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017936889.1
COORDINATES: similar to AA sequence:RefSeq:NP_252812.1
GO:0018480 - 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase activity [Evidence IEA]
GO:1901023 - 4-hydroxyphenylacetate catabolic process [Evidence IEA]
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:NP_252813.1
GO:0008687 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase activity [Evidence IEA]; GO:0008198 - ferrous iron binding [Evidence IEA]
GO:0006725 - cellular aromatic compound metabolic process [Evidence IEA]
3,4-dihydroxyphenylacetate 2,3-dioxygenase
COORDINATES: similar to AA sequence:RefSeq:WP_017904548.1
5-carboxymethyl-2-hydroxymuconate Delta-isomerase
COORDINATES: similar to AA sequence:RefSeq:NP_252816.1
GO:0018817 - 2-oxo-hept-3-ene-1,7-dioate hydratase activity [Evidence IEA]
2-oxo-hepta-3-ene-1,7-dioic acid hydratase
COORDINATES: similar to AA sequence:RefSeq:WP_017478945.1
GO:0018802 - 2,4-dihydroxyhept-2-ene-1,7-dioate aldolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012307.2
reverse transcriptase domain-containing protein
group II intron maturase-specific domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015477365.1
COORDINATES: similar to AA sequence:RefSeq:WP_010466541.1