Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120zeta, complete sequence.
type: Entry
definition: Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120zeta, complete sequence.
sequence version: NC_003241.1
sequence date: 2023-06-11
sequence: sequence
division: CON
label: NC_003241.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMD00061094
keyword: RefSeq
source: Nostoc sp. PCC 7120 = FACHB-418 (Anabaena sp. PCC 7120)
organism: Nostoc sp. PCC 7120 = FACHB-418
taxonomy: Bacteria; Cyanobacteriota; Cyanophyceae; Nostocales; Nostocaceae; Nostoc.
reference: 1
references: 11759840
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nAP003606.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 06/11/2023 11:41:28\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,155\nCDSs (total) :: 6,069\nGenes (coding) :: 5,928\nCDSs (with protein) :: 5,928\nGenes (RNA) :: 86\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 70\nncRNAs :: 4\nPseudo Genes (total) :: 141\nCDSs (without protein) :: 141\nPseudo Genes (ambiguous residues) :: 0 of 141\nPseudo Genes (frameshifted) :: 51 of 141\nPseudo Genes (incomplete) :: 88 of 141\nPseudo Genes (internal stop) :: 30 of 141\nPseudo Genes (multiple problems) :: 26 of 141\nCRISPR Arrays :: 11\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 5584
topology: circular
so has quality: SO_0000988
location: 1..5584
location: region:1-5584:1
RO_0002162: 103690

NC_003241
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMD00061094
type: BioSample
SIO_000068: biosample

1
title: Complete genomic sequence of the filamentous nitrogen-fixing cyanobacterium Anabaena sp. strain PCC 7120
author: Kaneko, T.
author: Nakamura, Y.
author: Wolk, C.P.
author: Kuritz, T.
author: Sasamoto, S.
author: Watanabe, A.
author: Iriguchi, M.
author: Ishikawa, A.
author: Kawashima, K.
author: Kimura, T.
author: Kishida, Y.
author: Kohara, M.
author: Matsumoto, M.
author: Matsuno, A.
author: Muraki, A.
author: Nakazaki, N.
author: Shimpo, S.
author: Sugimoto, M.
author: Takazawa, M.
author: Yamada, M.
author: Yasuda, M.
author: Tabata, S.
journal: DNA Res
volume: 8
issue: 5
pages: 205-13
year: 2001
pubmed: 11759840

11759840
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Sato, S.
author: Kaneko, T.
journal: Submitted (02-MAY-2001) Contact:Shusei Sato Kazusa DNA Research Institute, Department of Plant Genome Research; 2-6-7 Kazusa-kamatari, Kisarazu, Chiba 292-0812, Japan URL :http://www.kazusa.or.jp/rhizobase/

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5584:1
position: 5584
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5584:1:source
so part of: sequence
organism: Nostoc sp. PCC 7120 = FACHB-418
mol type: genomic DNA
strain: PCC 7120
plasmid: pCC7120zeta
note: synonym:Anabaena sp. PCC7120

103690
type: Taxonomy
SIO_000068: taxonomy

PCC7120DELTA_RS01940
type: Gene
subclass of: SO_0000704
RO_0002162: 103690
locus tag: PCC7120DELTA_RS01940
so part of: sequence
location: join(4691..5584,1..1449)
location: region:1-5584:1
so has part: feature:4691-5584:1:exon
so has part: feature:1-1449:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:4691-5584:1:exon

position:4691:1
position: 4691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-1449:1:exon

position:1449:1
position: 1449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PCC7120DELTA_RS01940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 103690
locus tag: PCC7120DELTA_RS01940
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: VapE family protein
translation: MVNTLQKNQSKEQTIEFLSQQRGIPVDWLEAHCKRDRDGWLITGANYQQQKRLDKPRTTKDGKQVKYVSHTKDKQKYDIFIPVEPTFGLPITDDYDRDATLVITEGAFKAIKGCSEGVLTVSVPGVNQLFKPKESGGDLVNGLHALTIRYKKIIIAFDADASFKPQVWDAIKKGAMALIERDCDVKIAVWQHSEETKGMDDYINKEGIEAFKLVLENALALDAWEHQYPRPEDKASKTKRTKAREAIEKYYGDRLQWNELKQRIELDGTQYKAGHAYIDIDKDICIELPKELAMDLMVYVARQKAYHPVANYLSSLENYGIEHSIEYGTVDSIKYAMSAILQSVADIHDDLAQTILIKWLVSGVARIFEPGCKVDMMPIFYGRQGIGKSSFLRELCPQSDWFSDDHSGTGDKDAMMLLNQFWILEIAEFEKIYSKSDAETLKAIVTKLADTYRAPYDKDLETHFRRCILAATANSQDFLRDSSGDRRYPVIALHQKVNIPLLIEKRDELWFYAMQLYRLGYQWHTTPEEDAKVSINNAAYRGYDIFGEAVADAVKFPGSPHGLMEKTRIDYVWEKINAHKSPLPDLTQKDSRAIANALKQLGYEQKNVWTDGSSKKFWVLTSPITSLPEFSDSGQGEVRHTQQELQPFLTSLPQIKLLKKNTKVAESIVDDNPYAHLDDEKESLKSGNEVMEASNVDTASLTSPLPDLVDSGNDAGNEVKIGDRVTLMVDHSFALAGTALEVVGINDRYIRCLRCDRKQNQPASLREIIVLADQVQLTNS
SIO_010081: PCC7120DELTA_RS01940
subclass of: SO_0000673
so part of: PCC7120DELTA_RS01940
location: join(4691..5584,1..1449)
location: region:1-5584:1
so has part: feature:4691-5584:1:exon
so has part: feature:1-1449:1:exon

WP_044520434.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4691-5584:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-1449:1:exon

PCC7120DELTA_RS01945
type: Gene
subclass of: SO_0000704
RO_0002162: 103690
locus tag: PCC7120DELTA_RS01945
old locus tag: asr9501
so part of: sequence
location: 1476..1700
location: region:1476-1700:1
so has part: feature:1476-1700:1:exon
subclass of: SO_0000010

position:1476:1
position: 1476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1700:1
position: 1700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1476-1700:1:exon

PCC7120DELTA_RS01945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 103690
locus tag: PCC7120DELTA_RS01945
old locus tag: asr9501
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDRLMLPYFGKQMAITCAYRSAAKMKAKKPDIGTIPVSGLMPHYRGRHTKALRAIYPTHLGNPWAYQVGRLGGE
SIO_010081: PCC7120DELTA_RS01945
subclass of: SO_0000673
so part of: PCC7120DELTA_RS01945
location: 1476..1700
location: region:1476-1700:1
so has part: feature:1476-1700:1:exon

WP_010994016.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1476-1700:1:exon

PCC7120DELTA_RS01950
type: Gene
subclass of: SO_0000704
RO_0002162: 103690
locus tag: PCC7120DELTA_RS01950
old locus tag: asl9502
so part of: sequence
location: complement(1706..1888)
location: region:1706-1888:-1
so has part: feature:1706-1888:-1:exon
subclass of: SO_0000010

position:1706:-1
position: 1706
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1888:-1
position: 1888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1706-1888:-1:exon

PCC7120DELTA_RS01950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 103690
locus tag: PCC7120DELTA_RS01950
old locus tag: asl9502
inference: COORDINATES: protein motif:HMM:NF013561.2
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribbon-helix-helix protein, CopG family
translation: MAVSIEKRVMPSKKPRLSVVIDQETINQLDEVAKKYDRSRSYMIALAIKKLIEGEQQNIA
SIO_010081: PCC7120DELTA_RS01950
subclass of: SO_0000673
so part of: PCC7120DELTA_RS01950
location: complement(1706..1888)
location: region:1706-1888:-1
so has part: feature:1706-1888:-1:exon

WP_010994017.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1706-1888:-1:exon

PCC7120DELTA_RS01960
type: Gene
subclass of: SO_0000704
RO_0002162: 103690
locus tag: PCC7120DELTA_RS01960
old locus tag: asr9503
so part of: sequence
location: 2359..2565
location: region:2359-2565:1
so has part: feature:2359-2565:1:exon
subclass of: SO_0000010

position:2359:1
position: 2359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2565:1
position: 2565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2359-2565:1:exon

PCC7120DELTA_RS01960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 103690
locus tag: PCC7120DELTA_RS01960
old locus tag: asr9503
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016862777.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTESTFKDTLAHTQFGANADKFGGWDTAMEAAEAVETGDIQSLRDIASNHPEATPLIERIVTVSSEHR
SIO_010081: PCC7120DELTA_RS01960
subclass of: SO_0000673
so part of: PCC7120DELTA_RS01960
location: 2359..2565
location: region:2359-2565:1
so has part: feature:2359-2565:1:exon

WP_010994018.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2359-2565:1:exon

PCC7120DELTA_RS01970
type: Gene
subclass of: SO_0000704
RO_0002162: 103690
locus tag: PCC7120DELTA_RS01970
old locus tag: alr9504
so part of: sequence
location: 2957..4129
location: region:2957-4129:1
so has part: feature:2957-4129:1:exon
subclass of: SO_0000010

position:2957:1
position: 2957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4129:1
position: 4129
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2957-4129:1:exon

PCC7120DELTA_RS01970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 103690
locus tag: PCC7120DELTA_RS01970
old locus tag: alr9504
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011666303.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDDKELLTLDMPLQRMKRSAWVAMPLPDSKAAIRFIGWASGRLAFMALSTSLSIIKNAAKAVIWISEKIEDGLKLLTHYYDALPYMGMPQDTLTLEAIPANQGASNLQTPSVDILAGIAGKHLLIIGDTGSGKSTIAQYIAARNSSQIKVYDADAAPDDWQGLKVVGKGGDFGEINASMNADIDELENRIKLRSQSGDNALTGKELCIIAEEFPSLKDECEIAPEWLGKLARRGRKPKIFVIALSQSDSVKALGIEGDGAIRQNFKYLRLGKFAVQHAKKLGNDAMVNWLQSGKYRAMLDDEPAQMPSIDSTLLVHTRLLDSRAIAGENPPEPPPEMDLTNLPHSLKPAILALKQEGWSDSKLIKEVLGYSGGNYQKGKLILDELLGRGQ
SIO_010081: PCC7120DELTA_RS01970
subclass of: SO_0000673
so part of: PCC7120DELTA_RS01970
location: 2957..4129
location: region:2957-4129:1
so has part: feature:2957-4129:1:exon

WP_010994019.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2957-4129:1:exon

PCC7120DELTA_RS01975
type: Gene
subclass of: SO_0000704
RO_0002162: 103690
locus tag: PCC7120DELTA_RS01975
old locus tag: alr9505
so part of: sequence
location: 4130..4435
location: region:4130-4435:1
so has part: feature:4130-4435:1:exon
subclass of: SO_0000010

position:4130:1
position: 4130
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4435:1
position: 4435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4130-4435:1:exon

PCC7120DELTA_RS01975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 103690
locus tag: PCC7120DELTA_RS01975
old locus tag: alr9505
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MISINYEQKNLRMAKKGTPRISADAYDQAEIERLAENHKTIRYHASNGFEFSIGVDSRRVLTARTQIDSRIHYRYVGTIETVSKEQLEAIANEFKEIYEGK
SIO_010081: PCC7120DELTA_RS01975
subclass of: SO_0000673
so part of: PCC7120DELTA_RS01975
location: 4130..4435
location: region:4130-4435:1
so has part: feature:4130-4435:1:exon

WP_010994020.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4130-4435:1:exon