Yersinia pestis A1122 plasmid unnamed, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia.
Finished sequence of Yersinia pestis A1122
Submitted (14-JUL-2011) Genome Sciences Group, Los Alamos National Laboratory, P.O. Box 1663, Los Alamos, NM 87545, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP002957.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/07/2023 01:20:55\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,234\nCDSs (total) :: 4,138\nGenes (coding) :: 3,973\nCDSs (with protein) :: 3,973\nGenes (RNA) :: 96\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 68\nncRNAs :: 10\nPseudo Genes (total) :: 165\nCDSs (without protein) :: 165\nPseudo Genes (ambiguous residues) :: 0 of 165\nPseudo Genes (frameshifted) :: 72 of 165\nPseudo Genes (incomplete) :: 108 of 165\nPseudo Genes (internal stop) :: 24 of 165\nPseudo Genes (multiple problems) :: 31 of 165\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:YP_005220885.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:YP_005220886.1
COORDINATES: similar to AA sequence:RefSeq:WP_000423989.1
COORDINATES: similar to AA sequence:RefSeq:YP_005220889.1
COORDINATES: similar to AA sequence:RefSeq:WP_011172027.1
COORDINATES: similar to AA sequence:RefSeq:YP_005220891.1
COORDINATES: similar to AA sequence:RefSeq:YP_005220892.1
COORDINATES: similar to AA sequence:RefSeq:YP_005220893.1
COORDINATES: similar to AA sequence:RefSeq:WP_000049674.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:YP_005220896.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014962244.1
COORDINATES: similar to AA sequence:RefSeq:YP_005220898.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001291547.1
COORDINATES: similar to AA sequence:RefSeq:WP_016051714.1
COORDINATES: similar to AA sequence:RefSeq:WP_000182009.1
COORDINATES: similar to AA sequence:RefSeq:YP_005220903.1
COORDINATES: similar to AA sequence:RefSeq:WP_002214137.1
COORDINATES: similar to AA sequence:RefSeq:WP_002211801.1
COORDINATES: similar to AA sequence:RefSeq:WP_016051708.1
COORDINATES: similar to AA sequence:RefSeq:NP_459923.1
IS200/IS605-like element IS1541A family transposase
COORDINATES: similar to AA sequence:RefSeq:YP_005220938.1
COORDINATES: similar to AA sequence:RefSeq:WP_011114035.1
COORDINATES: similar to AA sequence:RefSeq:WP_016051677.1
COORDINATES: similar to AA sequence:RefSeq:WP_002214151.1
COORDINATES: similar to AA sequence:RefSeq:YP_005220943.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016579699.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004110025.1
COORDINATES: similar to AA sequence:RefSeq:WP_001293470.1
COORDINATES: similar to AA sequence:RefSeq:YP_005220809.1
COORDINATES: similar to AA sequence:RefSeq:WP_002404714.1
COORDINATES: similar to AA sequence:RefSeq:WP_002228796.1
COORDINATES: similar to AA sequence:RefSeq:WP_004110038.1
COORDINATES: similar to AA sequence:RefSeq:WP_016051667.1
COORDINATES: similar to AA sequence:RefSeq:WP_002222868.1
COORDINATES: similar to AA sequence:RefSeq:NP_707752.1
COORDINATES: similar to AA sequence:RefSeq:WP_002213439.1
COORDINATES: protein motif:HMM:NF012381.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:YP_005220814.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
5'-3' exonuclease H3TH domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:YP_005220815.1
COORDINATES: similar to AA sequence:RefSeq:YP_005220816.1
COORDINATES: similar to AA sequence:RefSeq:WP_004110102.1
COORDINATES: similar to AA sequence:RefSeq:WP_012228774.1
COORDINATES: similar to AA sequence:RefSeq:WP_000645856.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:NP_858162.1
IS21-like element IS100kyp family helper ATPase IstB
COORDINATES: similar to AA sequence:RefSeq:WP_000627495.1
IS21-like element IS100 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_002211744.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_017694200.1
COORDINATES: similar to AA sequence:RefSeq:WP_000108571.1
COORDINATES: similar to AA sequence:RefSeq:WP_017694197.1
COORDINATES: similar to AA sequence:RefSeq:WP_000274511.1
COORDINATES: similar to AA sequence:RefSeq:NP_958723.1
COORDINATES: similar to AA sequence:RefSeq:NP_052645.1
COORDINATES: similar to AA sequence:RefSeq:WP_017694174.1
COORDINATES: similar to AA sequence:RefSeq:WP_002211751.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229773.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002215070.1
COORDINATES: similar to AA sequence:RefSeq:WP_000817637.1
COORDINATES: similar to AA sequence:RefSeq:WP_002211753.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_002215068.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_002211754.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011147726.1
Rpn family recombination-promoting nuclease/putative transposase
COORDINATES: similar to AA sequence:RefSeq:WP_002211756.1
COORDINATES: similar to AA sequence:RefSeq:WP_012666958.1
COORDINATES: similar to AA sequence:RefSeq:WP_002211758.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612362.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:NP_708749.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
reverse transcriptase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000728920.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612074.1
IS110-like element IS1618 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_001239408.1
COORDINATES: similar to AA sequence:RefSeq:WP_000343613.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002211761.1
F1 operon transcriptional regulator Caf1R
COORDINATES: similar to AA sequence:RefSeq:WP_002211762.1
COORDINATES: similar to AA sequence:RefSeq:WP_002211763.1
F1 capsule-anchoring usher protein Caf1A
COORDINATES: similar to AA sequence:RefSeq:WP_002216410.1
COORDINATES: similar to AA sequence:RefSeq:YP_005220827.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002228802.1
COORDINATES: similar to AA sequence:RefSeq:WP_002228800.1
COORDINATES: similar to AA sequence:RefSeq:WP_006812566.1
COORDINATES: similar to AA sequence:RefSeq:WP_004110112.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016598629.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002211769.1
GO:0098004 - virus tail fiber assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016674228.1
COORDINATES: similar to AA sequence:RefSeq:WP_002211771.1
COORDINATES: similar to AA sequence:RefSeq:WP_006812505.1
COORDINATES: similar to AA sequence:RefSeq:YP_005220869.1
COORDINATES: similar to AA sequence:RefSeq:YP_005220870.1
COORDINATES: similar to AA sequence:RefSeq:WP_016051624.1
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0016032 - viral process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000440566.1
COORDINATES: similar to AA sequence:RefSeq:WP_002211776.1
COORDINATES: similar to AA sequence:RefSeq:YP_005220875.1
COORDINATES: similar to AA sequence:RefSeq:YP_005220876.1
COORDINATES: similar to AA sequence:RefSeq:WP_016051620.1
COORDINATES: similar to AA sequence:RefSeq:WP_002211779.1
COORDINATES: similar to AA sequence:RefSeq:YP_005220879.1
COORDINATES: similar to AA sequence:RefSeq:YP_005220880.1
COORDINATES: similar to AA sequence:RefSeq:YP_005220881.1
COORDINATES: similar to AA sequence:RefSeq:WP_006812512.1
COORDINATES: similar to AA sequence:RefSeq:WP_002211783.1