Flavobacterium branchiophilum FL-15 plasmid pFB1, complete sequence.
type: Entry
definition: Flavobacterium branchiophilum FL-15 plasmid pFB1, complete sequence.
sequence version: NC_018751.1
sequence date: 2023-03-25
sequence: sequence
division: CON
label: NC_018751.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMEA3138411
keyword: RefSeq
source: Flavobacterium branchiophilum FL-15
organism: Flavobacterium branchiophilum FL-15
taxonomy: Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.
reference: 1
references: 21926215
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nFQ859182.1.\nGenerated by AGMIAL.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 11:01:36\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,059\nCDSs (total) :: 3,003\nGenes (coding) :: 2,974\nCDSs (with protein) :: 2,974\nGenes (RNA) :: 56\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 44\nncRNAs :: 3\nPseudo Genes (total) :: 29\nCDSs (without protein) :: 29\nPseudo Genes (ambiguous residues) :: 0 of 29\nPseudo Genes (frameshifted) :: 8 of 29\nPseudo Genes (incomplete) :: 20 of 29\nPseudo Genes (internal stop) :: 6 of 29\nPseudo Genes (multiple problems) :: 4 of 29\nCRISPR Arrays :: 5\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000155
sequence length: 3408
topology: linear
so has quality: SO_0000987
location: 1..3408
location: region:1-3408:1
RO_0002162: 1034807

NC_018751
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMEA3138411
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence of the fish pathogen Flavobacterium branchiophilum
author: Touchon, M.
author: Barbier, P.
author: Bernardet, J.F.
author: Loux, V.
author: Vacherie, B.
author: Barbe, V.
author: Rocha, E.P.
author: Duchaud, E.
journal: Appl Environ Microbiol
volume: 77
issue: 21
pages: 7656-7662
year: 2011
pubmed: 21926215

21926215
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Genoscope -, C.E.A.
journal: Submitted (26-MAY-2011) Genoscope - Centre National de Sequencage : BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr)

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3408:1
position: 3408
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-3408:1:source
so part of: sequence
organism: Flavobacterium branchiophilum FL-15
mol type: genomic DNA
strain: FL-15
plasmid: pFB1

1034807
type: Taxonomy
SIO_000068: taxonomy

FBFL15_RS00005
type: Gene
subclass of: SO_0000704
RO_0002162: 1034807
locus tag: FBFL15_RS00005
old locus tag: FBFL15_p0001
so part of: sequence
location: 37..1095
location: region:37-1095:1
so has part: feature:37-1095:1:exon
subclass of: SO_0000010

position:37:1
position: 37
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1095:1
position: 1095
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:37-1095:1:exon

FBFL15_RS00005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1034807
locus tag: FBFL15_RS00005
old locus tag: FBFL15_p0001
function: 3.1 DNA replication
inference: COORDINATES: protein motif:HMM:NF013235.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RepB family plasmid replication initiator protein
translation: MKSDIIAQDNRLTTARYELSLVEKRVFYYIIKEVRKNYSIGRRDLFDNLVLNIKISDLAKDTNLNERETEVKKGLRSLRLREFEWDNGLHEKDEDYEWLVCGFINYATIKKGVAEVEVSKKLMPFLVELSSQFTPYSLTVAMSLKSKWSQRMYELCQKWQGTDGFRMSIKDLRKSFVLEDAYKEYGSLKLKVLDVAKKELKKLYDVGQCDVYFEYSEEKNGRSVETLRFKLFRKNTLNVKTTNDMLLELIPVFRALYNTDKMPKNDVFIKDVLLQLQKYPSLIEPLNTRIREILATGVKDDTARYVRFILNEDILNYTEKPTKPKGGKVSEKEKQPNDAMIDILGLANSKTV
SIO_010081: FBFL15_RS00005
subclass of: SO_0000673
so part of: FBFL15_RS00005
location: 37..1095
location: region:37-1095:1
so has part: feature:37-1095:1:exon

WP_015038637.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:37-1095:1:exon

FBFL15_RS00010
type: Gene
subclass of: SO_0000704
RO_0002162: 1034807
locus tag: FBFL15_RS00010
old locus tag: FBFL15_p0002
so part of: sequence
location: complement(1180..1695)
location: region:1180-1695:-1
so has part: feature:1180-1695:-1:exon
subclass of: SO_0000010

position:1180:-1
position: 1180
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1695:-1
position: 1695
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1180-1695:-1:exon

FBFL15_RS00010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1034807
locus tag: FBFL15_RS00010
old locus tag: FBFL15_p0002
function: 6 Protein of unknown function, without similarity to other proteins
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSDKIKTSEEVREELADKKVAKTYLAEFENGINHKLSRFEGVLANFKPTCEIKHKYDTDEIKRLNTALNEIVLKLQEISIPEKIEVLEKKENKITFTDRTTKWLTWFCSIAFVVAVGGFCYGYIAYSEVAKSNAESFEKGIFEGRNHIYNISTPAGKNRIDKNHPDWRTVR
SIO_010081: FBFL15_RS00010
subclass of: SO_0000673
so part of: FBFL15_RS00010
location: complement(1180..1695)
location: region:1180-1695:-1
so has part: feature:1180-1695:-1:exon

WP_015038638.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1180-1695:-1:exon

FBFL15_RS00015
type: Gene
subclass of: SO_0000704
RO_0002162: 1034807
locus tag: FBFL15_RS00015
old locus tag: FBFL15_p0003
so part of: sequence
location: complement(1643..2329)
location: region:1643-2329:-1
so has part: feature:1643-2329:-1:exon
subclass of: SO_0000010

position:1643:-1
position: 1643
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2329:-1
position: 2329
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1643-2329:-1:exon

FBFL15_RS00015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1034807
locus tag: FBFL15_RS00015
old locus tag: FBFL15_p0003
function: 4.6 Miscellaneous
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: mobilization protein
translation: MGKSCVKIKPVTGSSEKHNTREIEPKYLIPSEVENIHIVDAKIENVRKEIEKKYIENVGQKMQAKATPIREAVILLPDNDNDKNLENLLSLNDELKKRYGIEAFQVHIHNDEGHIDNNGKAKYNYHAHVVYNWTDANTGKSLKLGKQEMSEIQTLTAEHLQMQRGEKGSKSLSLNHHQYRGYLEIKDEFIKEFKIELTEKKDREIRTKIIENERQNKDIGRSSRGISR
SIO_010081: FBFL15_RS00015
subclass of: SO_0000673
so part of: FBFL15_RS00015
location: complement(1643..2329)
location: region:1643-2329:-1
so has part: feature:1643-2329:-1:exon

WP_015038639.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1643-2329:-1:exon

FBFL15_RS00020
type: Gene
subclass of: SO_0000704
RO_0002162: 1034807
locus tag: FBFL15_RS00020
old locus tag: FBFL15_p0004
so part of: sequence
location: 2538..2789
location: region:2538-2789:1
so has part: feature:2538-2789:1:exon
subclass of: SO_0000010

position:2538:1
position: 2538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2789:1
position: 2789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2538-2789:1:exon

FBFL15_RS00020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1034807
locus tag: FBFL15_RS00020
old locus tag: FBFL15_p0004
function: 5.2 Protein of unknown function similar to proteins from other organisms
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009125356.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: prevent-host-death protein
translation: MIVISSREFRDNQKKYFDLIDKNEQVIVQRGKNQSYKLVPVLENEMLMTEAEFYAKIDKSLQQFEEGKFTRIAKEDFKTFLGL
SIO_010081: FBFL15_RS00020
subclass of: SO_0000673
so part of: FBFL15_RS00020
location: 2538..2789
location: region:2538-2789:1
so has part: feature:2538-2789:1:exon

WP_015038640.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2538-2789:1:exon

FBFL15_RS00025
type: Gene
subclass of: SO_0000704
RO_0002162: 1034807
locus tag: FBFL15_RS00025
old locus tag: FBFL15_p0005
so part of: sequence
location: 2786..3055
location: region:2786-3055:1
so has part: feature:2786-3055:1:exon
subclass of: SO_0000010

position:2786:1
position: 2786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3055:1
position: 3055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2786-3055:1:exon

FBFL15_RS00025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1034807
locus tag: FBFL15_RS00025
old locus tag: FBFL15_p0005
function: 4.6 Miscellaneous
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013926835.1
GO process: GO:0008219 - cell death [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Txe/YoeB family addiction module toxin
translation: MSYHLEFSDQTKIDIAFHKKAGDKAILKKLNSLLEELSEHPRTGTGQIEILKYYAEETFSRRINREHRLIYRIREETVQVLVLSAYGHY
SIO_010081: FBFL15_RS00025
subclass of: SO_0000673
so part of: FBFL15_RS00025
location: 2786..3055
location: region:2786-3055:1
so has part: feature:2786-3055:1:exon

WP_015038641.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2786-3055:1:exon