Flavobacterium branchiophilum FL-15 plasmid pFB1, complete sequence.
Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.
Complete genome sequence of the fish pathogen Flavobacterium branchiophilum
Submitted (26-MAY-2011) Genoscope - Centre National de Sequencage : BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr)
REFSEQ INFORMATION: The reference sequence is identical to\nFQ859182.1.\nGenerated by AGMIAL.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 11:01:36\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,059\nCDSs (total) :: 3,003\nGenes (coding) :: 2,974\nCDSs (with protein) :: 2,974\nGenes (RNA) :: 56\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 44\nncRNAs :: 3\nPseudo Genes (total) :: 29\nCDSs (without protein) :: 29\nPseudo Genes (ambiguous residues) :: 0 of 29\nPseudo Genes (frameshifted) :: 8 of 29\nPseudo Genes (incomplete) :: 20 of 29\nPseudo Genes (internal stop) :: 6 of 29\nPseudo Genes (multiple problems) :: 4 of 29\nCRISPR Arrays :: 5\n##Genome-Annotation-Data-END##
COORDINATES: protein motif:HMM:NF013235.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
RepB family plasmid replication initiator protein
6 Protein of unknown function, without similarity to other proteins
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
5.2 Protein of unknown function similar to proteins from other organisms
COORDINATES: similar to AA sequence:RefSeq:WP_009125356.1
COORDINATES: similar to AA sequence:RefSeq:WP_013926835.1